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From "Finan, Sean" <Sean.Fi...@childrens.harvard.edu>
Subject RE: UMLS Env variables suggestion
Date Sun, 05 Jan 2014 03:09:15 GMT
This went in to 3.1  https://issues.apache.org/jira/browse/CTAKES-164

I agree - the docs need to be updated if there is consensus on the use of this method.  Personally
I think that there should be one supported method, not both dot and underscore.  I would prefer
that we remove the dot functionality since it is not operational across all environments,
but it isn't up to me alone to remove functionality.

-----Original Message-----
From: Chen, Pei [mailto:Pei.Chen@childrens.harvard.edu] 
Sent: Saturday, January 04, 2014 4:08 PM
To: <dev@ctakes.apache.org>
Cc: dev@ctakes.apache.org
Subject: Re: UMLS Env variables suggestion

I believe Sean updated the code to also support underscore (_) as well. But the docs just
need to be updated...


> On Jan 4, 2014, at 4:04 PM, "Dewful" <dewful@gmail.com> wrote:
> 
> In the documentation, in the .sh files to run ctakes;
> 
> # If you plan to use the UMLS Resources, set/export env variables # 
> export ctakes.umlsuser=[username], ctakes.umlspw=[password]
> 
> however, simply trying to
> 
> export ctakes.umlsuser=myusername, ctakes.umlspw=mypassword
> 
> doesnt work because bash3 doesnt allow dots in the keyname and will 
> throw an error
> 
> bin/runctakesCVD.sh: line 42: export: `ctakes.umlsuser=username,': not 
> a valid identifier
> 
> http://stackoverflow.com/questions/15016403/how-to-export-dot-separate
> d-environment-variablesexplains
> some solutions
> 
> it may be helpful to show how the user can set these easily if they 
> want to set the env variables this way, possibly using one of the suggestions in SO.
> 
> N

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