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From: "Masanz, James J." <Masanz.James@mayo.edu>
To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
Subject: RE: [VOTE] Release Apache cTAKES 3.1 (rc3)
Thread-Topic: [VOTE] Release Apache cTAKES 3.1 (rc3)
Thread-Index: AQHOpgOZMfico0UVIES2vvANcNBRbJm0DAsi
Date: Tue, 3 Sep 2013 13:51:20 +0000
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=0A=
I assume people who want the source release rather than trunk know they wan=
t the source release for the various policy reasons people want a source *r=
elease*.=0A=
=0A=
And if they don't want the binary release, and are savvy enough to use ecli=
pse or an IDE of their own choice, then trunk seems reasonable to suggest t=
o me. =0A=
=0A=
Not saying that is the right way of thinking, just explaining my thoughts.=
=0A=
=0A=
I can review the changes to the Wiki later today.=0A=
=0A=
-- James=0A=
=0A=
________________________________________=0A=
From: dev-return-1931-Masanz.James=3Dmayo.edu@ctakes.apache.org [dev-return=
-1931-Masanz.James=3Dmayo.edu@ctakes.apache.org] on behalf of Miller, Timot=
hy [Timothy.Miller@childrens.harvard.edu]=0A=
Sent: Monday, September 02, 2013 7:30 AM=0A=
To: dev@ctakes.apache.org=0A=
Subject: Re: [VOTE] Release Apache cTAKES 3.1 (rc3)=0A=
=0A=
I went ahead and modified the use of Concept in the wiki (#6 below), if=0A=
anyone wants to do a quick proof-read that would be helpful=0A=
(https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.1+User+Install=
+Guide).=0A=
Thanks to James and to Troy who did a lot of the work on the=0A=
documentation already so this was a pretty easy change despite the=0A=
scary-looking wiki syntax.=0A=
=0A=
One more question -- the user install guide points the user to the=0A=
binary zip/tgz files, and the developer guide points the developer to=0A=
the svn trunk, and as far as I can tell nobody is being pointed to=0A=
-src.zip/tgz. Are we pointing all developers at trunk? Do we need=0A=
guidelines for who should be working off of trunk and who should be=0A=
working off of the source release? I assume the source release is for=0A=
people who want more stable base if they are building something of their=0A=
own, but it's not clear in the install guides who should download what=0A=
and at what point that changes the install instructions.=0A=
=0A=
Tim=0A=
=0A=
On 09/01/2013 02:53 PM, Miller, Timothy wrote:=0A=
> Thanks James, I went and tried to fix 1) and 3) myself. I can try to do=
=0A=
> 5) a bit later unless someone else really wants to do it!=0A=
>=0A=
> For 4), are other people able to run the umls pipeline with the current=
=0A=
> memory settings (1024m)? I've never been able to run full cTAKES with=0A=
> that setting.=0A=
> Tim=0A=
>=0A=
> On 09/01/2013 02:28 PM, Masanz, James J. wrote:=0A=
>> Thanks for the review and the comments Tim.=0A=
>>=0A=
>> I totally agree about #6 - Concept is not a good choice=0A=
>>=0A=
>> I can take a look at #2 later. it sounds like the ctakesresources zip do=
esn't contain the log4j.xml but I'm not sure why it's required there offhan=
d.=0A=
>>=0A=
>> To request a user ID on the wiki, go to this page=0A=
>> https://cwiki.apache.org/confluence/signup.action=0A=
>>=0A=
>> ________________________________________=0A=
>> From: dev-return-1926-Masanz.James=3Dmayo.edu@ctakes.apache.org [dev-ret=
urn-1926-Masanz.James=3Dmayo.edu@ctakes.apache.org] on behalf of Miller, Ti=
mothy [Timothy.Miller@childrens.harvard.edu]=0A=
>> Sent: Sunday, September 01, 2013 1:01 PM=0A=
>> To: dev@ctakes.apache.org=0A=
>> Subject: Re: [VOTE] Release Apache cTAKES 3.1 (rc3)=0A=
>>=0A=
>> Going through the user install instructions (here: https://cwiki.apache.=
org/confluence/display/CTAKES/cTAKES+3.1+User+Install+Guide) have a few que=
stions (not all relating to the RC, but probably should be fixed concurrent=
ly with the release so people can use it.=0A=
>>=0A=
>> 1) Step 4 under install is a little confusing: The first sentence is "Do=
wnload [cTAKES 3.1 Dictionaries and Models]," where the brackets are a link=
, but not a link to the download site. The download link is lower on the in=
struction.=0A=
>>=0A=
>> 2) Running the regular aggregate processor (no UMLS), I get an exception=
 at the command line:=0A=
>> log4j:ERROR Could not parse url [file:/home/tmill/Projects/sandbox/ctake=
s-rcs/apache-ctakes-3.1.0/config/log4j.xml].=0A=
>> java.io.FileNotFoundException: /home/tmill/Projects/sandbox/ctakes-rcs/a=
pache-ctakes-3.1.0/config/log4j.xml (No such file or directory)=0A=
>>=0A=
>> 3) Under Add UMLS Access Rights, step 3 is not necessary.=0A=
>>=0A=
>> 4) Trying to run the umls pipeline I get an out of heap space exception =
during load-time:=0A=
>> Exception in thread "AWT-EventQueue-0" java.lang.OutOfMemoryError: Java =
heap space=0A=
>> I changed the -Xmx1024M option to -Xmx2g in the runctakesCVD.sh script a=
nd it fixed it.=0A=
>>=0A=
>> 5) Under CVD, step 6, where the user is instructed to look through a few=
 annotations, I think the example we use there -- Concept -- is probably no=
t the greatest. I believe that is an internal type to the assertion tool, b=
ut it might sound to a newcomer like the main entity type. Since this type =
doesn't contain much additional info it may mislead about the capabilities =
of cTAKES. (It would be best to rename or remove that type going forward bu=
t for now at least our tutorial should avoid mentioning it.=0A=
>>=0A=
>> Some of these issues I could change myself, what credentials do I use to=
 log into the wiki -- apache, jira, or something new?=0A=
>>=0A=
>> Tim=0A=
>>=0A=
>>=0A=
>>=0A=
>> On 08/31/2013 12:36 AM, Masanz, James J. wrote:=0A=
>>=0A=
>>=0A=
>> Hello all,=0A=
>>=0A=
>> This is a call for a vote on releasing the following candidate as Apache=
 cTAKES 3.1.0. This will be our first release as a TLP.=0A=
>>=0A=
>> For more detailed information on the changes/release notes, please visit=
:=0A=
>> https://issues.apache.org/jira/secure/ReleaseNote.jspa?version=3D1232327=
6&projectId=3D12313621=0A=
>>=0A=
>> The release was made using the cTAKES release process documented here:=
=0A=
>> http://ctakes.apache.org/ctakes-release-guide.html=0A=
>>=0A=
>> The candidate is available at:=0A=
>> http://people.apache.org/~james-masanz/RCs/ctakes-3.1.0/rc3/apache-ctake=
s-3.1.0-src.tar.gz /.zip=0A=
>>=0A=
>> The tag to be voted on:=0A=
>> http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.1.0-rc3/=0A=
>>=0A=
>> The MD5 checksum of the tarball can be found at:=0A=
>> http://people.apache.org/~james-masanz/RCs/ctakes-3.1.0/rc3/apache-ctake=
s-3.1.0-src.tar.gz.md5 / .zip.md5=0A=
>>=0A=
>> The signature of the tarball can be found at:=0A=
>> http://people.apache.org/~james-masanz/RCs/ctakes-3.1.0/rc3/apache-ctake=
s-3.1.0-src.tar.gz.asc /.zip.asc=0A=
>>=0A=
>> Apache cTAKES' KEYS file, containing the PGP keys used to sign the relea=
se:=0A=
>> http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.1.0-rc3/KEYS=0A=
>>=0A=
>> Please vote on releasing these packages as Apache cTAKES 3.1.0. The vote=
 is open for at least the next 72 hours.=0A=
>>=0A=
>> Only votes from the cTAKES PMC are binding, but folks are welcome to che=
ck the release candidate and voice their approval or disapproval. The vote =
passes if at least three binding +1 votes are cast.=0A=
>> [ ] +1 Release the packages as Apache cTAKES 3.1.0=0A=
>> [ ] -1 Do not release the packages because...=0A=
>>=0A=
>> Also, the convenience binary is:=0A=
>> http://people.apache.org/~james-masanz/RCs/ctakes-3.1.0/rc3/apache-ctake=
s-3.1.0-bin.tar.gz /.zip=0A=
>>=0A=
>> The nexus staging repository:=0A=
>> https://repository.apache.org/content/repositories/orgapachectakes-125/=
=0A=
>>=0A=
>> Thanks!=0A=
>> James Masanz=0A=
>>=0A=
=0A=