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From Pei Chen <chen...@apache.org>
Subject Re: [VOTE] Release Apache cTAKES 3.1 (rc3)
Date Tue, 03 Sep 2013 15:47:19 GMT
James,
+1
[x] +1 Release the packages as Apache cTAKES 3.1.0

Below is what I verified so far (plan to go through the documentation in
parallel):

Tested:
1- Downloaded src and bin tz
2- Verified Signatures
3- Unpacked and able to compile from source (mvn compile automatically
downloads umls resources)
3a - Able to run AggregatePlainTextProcessor using CVD from $mvn -PrunCVD
3b - Able to run a test note using AggregatePlainTextUMLSProcessor
4- Unpacked bin
4a - Download and merge resources folder from
http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-3.1.0.zip/download
4b - Added umls credentials to java args
4c - Able to run a sample note usning AggregatePlainTextUMLSProcessor


Notes:
1- User will get a misleading SQLException due to I/O umls file not found
if they do not download the umls resources.  I don't think it's a show
stopper.
2- For consistency, we should copy over the NOTICE/LICENSE for the new
template-filler module.  I don't think it's a show stopper, everything
there is included in the root NOTICE/LICENSE already.
3- runctakesCVD.sh warning about log4j.xml not found.  Should we just
remove it from the sh if it's not there?
4- got a GC OOM heap exceed error with the sample- let's increase the mem
requirements to 2g in the next release due to more models loaded in the
newer modules?

$ gpg --verify apache-ctakes-3.1.0-bin.tar.gz.asc
gpg: Signature made Fri Aug 30 10:18:26 2013 EDT using RSA key ID FD239395
gpg: Good signature from "James Joseph Masanz (CODE SIGNING KEY) <
james-masanz@apache.org>"
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the
owner.
Primary key fingerprint: 69D7 C55D 47CA 08ED E3D0  529C D27D BF3C FD23 9395
gpg --verify apache-ctakes-3.1.0-src.tar.gz.asc
gpg: Signature made Fri Aug 30 10:18:39 2013 EDT using RSA key ID FD239395
gpg: Good signature from "James Joseph Masanz (CODE SIGNING KEY) <
james-masanz@apache.org>"
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the
owner.
Primary key fingerprint: 69D7 C55D 47CA 08ED E3D0  529C D27D BF3C FD23 9395





On Sat, Aug 31, 2013 at 12:36 AM, Masanz, James J. <Masanz.James@mayo.edu>wrote:

>
> Hello all,
>
> This is a call for a vote on releasing the following candidate as Apache
> cTAKES 3.1.0. This will be our first release as a TLP.
>
> For more detailed information on the changes/release notes, please visit:
>
> https://issues.apache.org/jira/secure/ReleaseNote.jspa?version=12323276&projectId=12313621
>
> The release was made using the cTAKES release process documented here:
> http://ctakes.apache.org/ctakes-release-guide.html
>
> The candidate is available at:
>
> http://people.apache.org/~james-masanz/RCs/ctakes-3.1.0/rc3/apache-ctakes-3.1.0-src.tar.gz/.zip
>
> The tag to be voted on:
> http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.1.0-rc3/
>
> The MD5 checksum of the tarball can be found at:
>
> http://people.apache.org/~james-masanz/RCs/ctakes-3.1.0/rc3/apache-ctakes-3.1.0-src.tar.gz.md5/
.zip.md5
>
> The signature of the tarball can be found at:
>
> http://people.apache.org/~james-masanz/RCs/ctakes-3.1.0/rc3/apache-ctakes-3.1.0-src.tar.gz.asc/.zip.asc
>
> Apache cTAKES' KEYS file, containing the PGP keys used to sign the release:
> http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.1.0-rc3/KEYS
>
> Please vote on releasing these packages as Apache cTAKES 3.1.0. The vote
> is open for at least the next 72 hours.
>
> Only votes from the cTAKES PMC are binding, but folks are welcome to check
> the release candidate and voice their approval or disapproval. The vote
> passes if at least three binding +1 votes are cast.
> [ ] +1 Release the packages as Apache cTAKES 3.1.0
> [ ] -1 Do not release the packages because...
>
> Also, the convenience binary is:
>
> http://people.apache.org/~james-masanz/RCs/ctakes-3.1.0/rc3/apache-ctakes-3.1.0-bin.tar.gz/.zip
>
> The nexus staging repository:
> https://repository.apache.org/content/repositories/orgapachectakes-125/
>
> Thanks!
> James Masanz
>
>
> Sent: Friday, August 30, 2013 11:23 PM
> To: James Joseph Masanz
> Subject: Nexus: Staging Completed.
>
>
> Description:
>
> apache ctakes-3.1.0-rc3
>
> Details:
>
> The following artifacts have been staged to the org.apache.ctakes-125
> (u:james-masanz, a:71.82.125.95) repository.
>
> archetype-catalog.xml
> ctakes-coreference-3.1.0.jar
> ctakes-coreference-3.1.0-javadoc.jar.asc
> ctakes-coreference-3.1.0.pom.asc
> ctakes-coreference-3.1.0.jar.asc
> ctakes-coreference-3.1.0-javadoc.jar
> ctakes-coreference-3.1.0-sources.jar
> ctakes-coreference-3.1.0-sources.jar.asc
> ctakes-coreference-3.1.0.pom
> ctakes-ne-contexts-res-3.1.0.pom.asc
> ctakes-ne-contexts-res-3.1.0-sources.jar.asc
> ctakes-ne-contexts-res-3.1.0.pom
> ctakes-ne-contexts-res-3.1.0.jar.asc
> ctakes-ne-contexts-res-3.1.0.jar
> ctakes-ne-contexts-res-3.1.0-sources.jar
> ctakes-constituency-parser-3.1.0-javadoc.jar
> ctakes-constituency-parser-3.1.0-sources.jar.asc
> ctakes-constituency-parser-3.1.0-sources.jar
> ctakes-constituency-parser-3.1.0.pom.asc
> ctakes-constituency-parser-3.1.0.pom
> ctakes-constituency-parser-3.1.0-javadoc.jar.asc
> ctakes-constituency-parser-3.1.0.jar.asc
> ctakes-constituency-parser-3.1.0.jar
> ctakes-context-tokenizer-3.1.0-sources.jar
> ctakes-context-tokenizer-3.1.0.jar
> ctakes-context-tokenizer-3.1.0-javadoc.jar.asc
> ctakes-context-tokenizer-3.1.0.jar.asc
> ctakes-context-tokenizer-3.1.0-sources.jar.asc
> ctakes-context-tokenizer-3.1.0.pom.asc
> ctakes-context-tokenizer-3.1.0.pom
> ctakes-context-tokenizer-3.1.0-javadoc.jar
> ctakes-assertion-zoner-res-3.1.0-sources.jar.asc
> ctakes-assertion-zoner-res-3.1.0.jar.asc
> ctakes-assertion-zoner-res-3.1.0-sources.jar
> ctakes-assertion-zoner-res-3.1.0.pom
> ctakes-assertion-zoner-res-3.1.0.pom.asc
> ctakes-assertion-zoner-res-3.1.0.jar
> ctakes-clinical-pipeline-3.1.0-javadoc.jar.asc
> ctakes-clinical-pipeline-3.1.0.pom
> ctakes-clinical-pipeline-3.1.0-sources.jar
> ctakes-clinical-pipeline-3.1.0-sources.jar.asc
> ctakes-clinical-pipeline-3.1.0.jar.asc
> ctakes-clinical-pipeline-3.1.0-javadoc.jar
> ctakes-clinical-pipeline-3.1.0.pom.asc
> ctakes-clinical-pipeline-3.1.0.jar
> ctakes-3.1.0.pom.asc
> ctakes-3.1.0-source-release.zip.asc
> ctakes-3.1.0-source-release.zip
> ctakes-3.1.0.pom
> ctakes-pad-term-spotter-res-3.1.0-sources.jar
> ctakes-pad-term-spotter-res-3.1.0-sources.jar.asc
> ctakes-pad-term-spotter-res-3.1.0.jar.asc
> ctakes-pad-term-spotter-res-3.1.0.pom
> ctakes-pad-term-spotter-res-3.1.0.jar
> ctakes-pad-term-spotter-res-3.1.0.pom.asc
> ctakes-relation-extractor-res-3.1.0-sources.jar
> ctakes-relation-extractor-res-3.1.0.jar.asc
> ctakes-relation-extractor-res-3.1.0.pom.asc
> ctakes-relation-extractor-res-3.1.0-sources.jar.asc
> ctakes-relation-extractor-res-3.1.0.jar
> ctakes-relation-extractor-res-3.1.0.pom
> ctakes-assertion-3.1.0-sources.jar.asc
> ctakes-assertion-3.1.0.pom.asc
> ctakes-assertion-3.1.0.jar.asc
> ctakes-assertion-3.1.0-javadoc.jar.asc
> ctakes-assertion-3.1.0.jar
> ctakes-assertion-3.1.0.pom
> ctakes-assertion-3.1.0-sources.jar
> ctakes-assertion-3.1.0-javadoc.jar
> ctakes-constituency-parser-res-3.1.0.jar
> ctakes-constituency-parser-res-3.1.0.pom
> ctakes-constituency-parser-res-3.1.0.pom.asc
> ctakes-constituency-parser-res-3.1.0.jar.asc
> ctakes-constituency-parser-res-3.1.0-sources.jar.asc
> ctakes-constituency-parser-res-3.1.0-sources.jar
> ctakes-coreference-res-3.1.0-sources.jar.asc
> ctakes-coreference-res-3.1.0-sources.jar
> ctakes-coreference-res-3.1.0.pom.asc
> ctakes-coreference-res-3.1.0.jar
> ctakes-coreference-res-3.1.0.pom
> ctakes-coreference-res-3.1.0.jar.asc
> ctakes-pos-tagger-3.1.0.pom.asc
> ctakes-pos-tagger-3.1.0-sources.jar.asc
> ctakes-pos-tagger-3.1.0.jar.asc
> ctakes-pos-tagger-3.1.0.jar
> ctakes-pos-tagger-3.1.0-javadoc.jar.asc
> ctakes-pos-tagger-3.1.0-javadoc.jar
> ctakes-pos-tagger-3.1.0.pom
> ctakes-pos-tagger-3.1.0-sources.jar
> ctakes-side-effect-3.1.0-javadoc.jar
> ctakes-side-effect-3.1.0-javadoc.jar.asc
> ctakes-side-effect-3.1.0-sources.jar
> ctakes-side-effect-3.1.0.jar
> ctakes-side-effect-3.1.0.jar.asc
> ctakes-side-effect-3.1.0.pom.asc
> ctakes-side-effect-3.1.0.pom
> ctakes-side-effect-3.1.0-sources.jar.asc
> ctakes-ne-contexts-3.1.0-javadoc.jar
> ctakes-ne-contexts-3.1.0-javadoc.jar.asc
> ctakes-ne-contexts-3.1.0.jar.asc
> ctakes-ne-contexts-3.1.0.jar
> ctakes-ne-contexts-3.1.0-sources.jar.asc
> ctakes-ne-contexts-3.1.0-sources.jar
> ctakes-ne-contexts-3.1.0.pom.asc
> ctakes-ne-contexts-3.1.0.pom
> ctakes-utils-3.1.0.jar.asc
> ctakes-utils-3.1.0-sources.jar.asc
> ctakes-utils-3.1.0.pom.asc
> ctakes-utils-3.1.0-sources.jar
> ctakes-utils-3.1.0.pom
> ctakes-utils-3.1.0-javadoc.jar
> ctakes-utils-3.1.0.jar
> ctakes-utils-3.1.0-javadoc.jar.asc
> ctakes-chunker-res-3.1.0-sources.jar
> ctakes-chunker-res-3.1.0.jar
> ctakes-chunker-res-3.1.0-sources.jar.asc
> ctakes-chunker-res-3.1.0.pom
> ctakes-chunker-res-3.1.0.pom.asc
> ctakes-chunker-res-3.1.0.jar.asc
> ctakes-lvg-3.1.0-javadoc.jar
> ctakes-lvg-3.1.0-javadoc.jar.asc
> ctakes-lvg-3.1.0.jar.asc
> ctakes-lvg-3.1.0.pom
> ctakes-lvg-3.1.0-sources.jar.asc
> ctakes-lvg-3.1.0-sources.jar
> ctakes-lvg-3.1.0.pom.asc
> ctakes-lvg-3.1.0.jar
> ctakes-dictionary-lookup-3.1.0-javadoc.jar
> ctakes-dictionary-lookup-3.1.0.jar.asc
> ctakes-dictionary-lookup-3.1.0.jar
> ctakes-dictionary-lookup-3.1.0.pom.asc
> ctakes-dictionary-lookup-3.1.0-sources.jar.asc
> ctakes-dictionary-lookup-3.1.0-javadoc.jar.asc
> ctakes-dictionary-lookup-3.1.0.pom
> ctakes-dictionary-lookup-3.1.0-sources.jar
> ctakes-drug-ner-res-3.1.0.pom.asc
> ctakes-drug-ner-res-3.1.0-sources.jar
> ctakes-drug-ner-res-3.1.0.pom
> ctakes-drug-ner-res-3.1.0-sources.jar.asc
> ctakes-drug-ner-res-3.1.0.jar
> ctakes-drug-ner-res-3.1.0.jar.asc
> ctakes-assertion-zoner-3.1.0-sources.jar.asc
> ctakes-assertion-zoner-3.1.0-sources.jar
> ctakes-assertion-zoner-3.1.0.pom
> ctakes-assertion-zoner-3.1.0-javadoc.jar
> ctakes-assertion-zoner-3.1.0-javadoc.jar.asc
> ctakes-assertion-zoner-3.1.0.jar.asc
> ctakes-assertion-zoner-3.1.0.jar
> ctakes-assertion-zoner-3.1.0.pom.asc
> ctakes-smoking-status-res-3.1.0.pom
> ctakes-smoking-status-res-3.1.0.pom.asc
> ctakes-smoking-status-res-3.1.0.jar
> ctakes-smoking-status-res-3.1.0.jar.asc
> ctakes-smoking-status-res-3.1.0-sources.jar
> ctakes-smoking-status-res-3.1.0-sources.jar.asc
> ctakes-dependency-parser-res-3.1.0.pom
> ctakes-dependency-parser-res-3.1.0-sources.jar.asc
> ctakes-dependency-parser-res-3.1.0-sources.jar
> ctakes-dependency-parser-res-3.1.0.pom.asc
> ctakes-dependency-parser-res-3.1.0.jar
> ctakes-dependency-parser-res-3.1.0.jar.asc
> ctakes-template-filler-3.1.0-javadoc.jar
> ctakes-template-filler-3.1.0-sources.jar
> ctakes-template-filler-3.1.0-sources.jar.asc
> ctakes-template-filler-3.1.0.jar
> ctakes-template-filler-3.1.0.pom.asc
> ctakes-template-filler-3.1.0-javadoc.jar.asc
> ctakes-template-filler-3.1.0.jar.asc
> ctakes-template-filler-3.1.0.pom
> ctakes-pad-term-spotter-3.1.0-sources.jar
> ctakes-pad-term-spotter-3.1.0-sources.jar.asc
> ctakes-pad-term-spotter-3.1.0.jar.asc
> ctakes-pad-term-spotter-3.1.0-javadoc.jar
> ctakes-pad-term-spotter-3.1.0-javadoc.jar.asc
> ctakes-pad-term-spotter-3.1.0.jar
> ctakes-pad-term-spotter-3.1.0.pom.asc
> ctakes-pad-term-spotter-3.1.0.pom
> ctakes-type-system-3.1.0.pom
> ctakes-type-system-3.1.0.jar.asc
> ctakes-type-system-3.1.0.jar
> ctakes-type-system-3.1.0-javadoc.jar.asc
> ctakes-type-system-3.1.0-sources.jar.asc
> ctakes-type-system-3.1.0.pom.asc
> ctakes-type-system-3.1.0-sources.jar
> ctakes-type-system-3.1.0-javadoc.jar
> ctakes-core-3.1.0-javadoc.jar
> ctakes-core-3.1.0-sources.jar.asc
> ctakes-core-3.1.0.jar
> ctakes-core-3.1.0-sources.jar
> ctakes-core-3.1.0-javadoc.jar.asc
> ctakes-core-3.1.0.pom.asc
> ctakes-core-3.1.0.jar.asc
> ctakes-core-3.1.0.pom
> ctakes-core-res-3.1.0.pom
> ctakes-core-res-3.1.0.pom.asc
> ctakes-core-res-3.1.0-sources.jar.asc
> ctakes-core-res-3.1.0.jar
> ctakes-core-res-3.1.0-sources.jar
> ctakes-core-res-3.1.0.jar.asc
> ctakes-regression-test-3.1.0.pom.asc
> ctakes-regression-test-3.1.0-sources.jar
> ctakes-regression-test-3.1.0.pom
> ctakes-regression-test-3.1.0-sources.jar.asc
> ctakes-regression-test-3.1.0.jar
> ctakes-regression-test-3.1.0.jar.asc
> ctakes-dictionary-lookup-res-3.1.0.jar
> ctakes-dictionary-lookup-res-3.1.0-sources.jar.asc
> ctakes-dictionary-lookup-res-3.1.0.jar.asc
> ctakes-dictionary-lookup-res-3.1.0-sources.jar
> ctakes-dictionary-lookup-res-3.1.0.pom
> ctakes-dictionary-lookup-res-3.1.0.pom.asc
> ctakes-relation-extractor-3.1.0-sources.jar
> ctakes-relation-extractor-3.1.0-javadoc.jar.asc
> ctakes-relation-extractor-3.1.0-javadoc.jar
> ctakes-relation-extractor-3.1.0.pom.asc
> ctakes-relation-extractor-3.1.0.pom
> ctakes-relation-extractor-3.1.0.jar
> ctakes-relation-extractor-3.1.0.jar.asc
> ctakes-relation-extractor-3.1.0-sources.jar.asc
> ctakes-lvg-res-3.1.0-sources.jar
> ctakes-lvg-res-3.1.0.jar
> ctakes-lvg-res-3.1.0-sources.jar.asc
> ctakes-lvg-res-3.1.0.pom
> ctakes-lvg-res-3.1.0.jar.asc
> ctakes-lvg-res-3.1.0.pom.asc
> ctakes-pos-tagger-res-3.1.0.pom.asc
> ctakes-pos-tagger-res-3.1.0.jar.asc
> ctakes-pos-tagger-res-3.1.0-sources.jar.asc
> ctakes-pos-tagger-res-3.1.0.pom
> ctakes-pos-tagger-res-3.1.0.jar
> ctakes-pos-tagger-res-3.1.0-sources.jar
> ctakes-preprocessor-3.1.0-sources.jar.asc
> ctakes-preprocessor-3.1.0-javadoc.jar.asc
> ctakes-preprocessor-3.1.0-sources.jar
> ctakes-preprocessor-3.1.0.jar
> ctakes-preprocessor-3.1.0.pom
> ctakes-preprocessor-3.1.0.pom.asc
> ctakes-preprocessor-3.1.0.jar.asc
> ctakes-preprocessor-3.1.0-javadoc.jar
> ctakes-chunker-3.1.0-sources.jar
> ctakes-chunker-3.1.0.pom.asc
> ctakes-chunker-3.1.0.jar
> ctakes-chunker-3.1.0-javadoc.jar
> ctakes-chunker-3.1.0-sources.jar.asc
> ctakes-chunker-3.1.0.jar.asc
> ctakes-chunker-3.1.0.pom
> ctakes-chunker-3.1.0-javadoc.jar.asc
> ctakes-smoking-status-3.1.0-javadoc.jar
> ctakes-smoking-status-3.1.0.pom.asc
> ctakes-smoking-status-3.1.0.pom
> ctakes-smoking-status-3.1.0-sources.jar.asc
> ctakes-smoking-status-3.1.0-javadoc.jar.asc
> ctakes-smoking-status-3.1.0-sources.jar
> ctakes-smoking-status-3.1.0.jar.asc
> ctakes-smoking-status-3.1.0.jar
> ctakes-side-effect-res-3.1.0.jar.asc
> ctakes-side-effect-res-3.1.0.pom
> ctakes-side-effect-res-3.1.0-sources.jar
> ctakes-side-effect-res-3.1.0.pom.asc
> ctakes-side-effect-res-3.1.0-sources.jar.asc
> ctakes-side-effect-res-3.1.0.jar
> ctakes-drug-ner-3.1.0-javadoc.jar
> ctakes-drug-ner-3.1.0.pom.asc
> ctakes-drug-ner-3.1.0.pom
> ctakes-drug-ner-3.1.0.jar
> ctakes-drug-ner-3.1.0.jar.asc
> ctakes-drug-ner-3.1.0-sources.jar
> ctakes-drug-ner-3.1.0-sources.jar.asc
> ctakes-drug-ner-3.1.0-javadoc.jar.asc
> ctakes-assertion-res-3.1.0.jar.asc
> ctakes-assertion-res-3.1.0-sources.jar
> ctakes-assertion-res-3.1.0-sources.jar.asc
> ctakes-assertion-res-3.1.0.jar
> ctakes-assertion-res-3.1.0.pom.asc
> ctakes-assertion-res-3.1.0.pom
> ctakes-dependency-parser-3.1.0.jar
> ctakes-dependency-parser-3.1.0-javadoc.jar
> ctakes-dependency-parser-3.1.0.pom
> ctakes-dependency-parser-3.1.0-javadoc.jar.asc
> ctakes-dependency-parser-3.1.0.pom.asc
> ctakes-dependency-parser-3.1.0-sources.jar.asc
> ctakes-dependency-parser-3.1.0.jar.asc
> ctakes-dependency-parser-3.1.0-sources.jar

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