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From Pei Chen <chen...@apache.org>
Subject NPE in ctakes-assertion with section headers?
Date Sat, 07 Sep 2013 15:59:24 GMT
Hi Matt and co.,
I vaguely remember this exception was fixed at sometime or another- do you
recall the details?
If not, i'll try and debug it...

Caused by: java.lang.NullPointerException

at
org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl.convertCharacterOffsetToLineToken(
CharacterOffsetToLineTokenConverterCtakesImpl.java:171)

at
org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl.convert(
CharacterOffsetToLineTokenConverterCtakesImpl.java:103)

at org.mitre.medfacts.zoner.ZonerCli.findHeadings(ZonerCli.java:543)

at org.mitre.medfacts.i2b2.cli.MedFactsRunner.findZones(
MedFactsRunner.java:212)

at org.mitre.medfacts.i2b2.api.SingleDocumentProcessor.processZones(
SingleDocumentProcessor.java:449)

at org.mitre.medfacts.i2b2.api.SingleDocumentProcessor.generateAnnotations(
SingleDocumentProcessor.java:173)

at
org.mitre.medfacts.i2b2.api.SingleDocumentProcessor.processSingleDocument(
SingleDocumentProcessor.java:97)

at org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine.process(
AssertionAnalysisEngine.java:210)

at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(
JCasAnnotator_ImplBase.java:48)

at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(
PrimitiveAnalysisEngine_impl.java:375)

... 17 more

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