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From Arohi Kumar <ar...@mobipulse.in>
Subject Re: Doubt regarding the cTAKES output
Date Fri, 06 Sep 2013 16:22:37 GMT
Hi Stephen,

Thanks a lot :)
That is exactly what it was.

Thanks
Arohi Kumar


On Fri, Sep 6, 2013 at 9:12 PM, Wu, Stephen T., Ph.D.
<Wu.Stephen@mayo.edu>wrote:

> Are you looking within an output XMI file?
>
> If so and you have a list of numbers there, I think it's because
> ontologyConceptArr points to actual UmlsConcept types, rather than to just
> a string with Concept Unique Identifiers (CUIs).  You have to follow the
> link to the number, perhaps search for
>   xmi:id="5280"
> in your XMI file.
>
> stephen
>
>
>
> On 9/6/13 9:55 AM, "Masanz, James J." <Masanz.James@mayo.edu> wrote:
>
> >I'm guessing you are referring to values of _ref_ontologyConceptArr?
> >
> >For DiseaseDisorderMention (and others besides Medication) those are
> >links to UmlsConcept annotations.
> >The value of  _ref_ontologyConceptArr leads to a list (FSArray) of values
> >that lead to UmlsConcept.
> >
> >
> >-----Original Message-----
> >From: dev-return-1973-Masanz.James=mayo.edu@ctakes.apache.org
> >[mailto:dev-return-1973-Masanz.James=mayo.edu@ctakes.apache.org] On
> >Behalf Of Arohi Kumar
> >Sent: Friday, September 06, 2013 9:34 AM
> >To: dev@ctakes.apache.org
> >Subject: Doubt regarding the cTAKES output
> >
> >Hello everyone,
> >
> >I recently installed cTAKES on my system and am trying to understand the
> >output that I am getting from it.
> >
> >I have a doubt regarding the *textsem:DiseaseDisorderMention*. I cannot
> >understand the *@ontologyConceptArr*(an array of numbers). Where do these
> >numbers map to and how can I understand their meaning?
> >
> >For example, the term "seasonal allergies" gives me "5280 5266 5329 5287
> >5301 5315 5273 5294 5322 5308"
> >
> >
> >Thank you
> >Arohi Kumar
>
>

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