Return-Path: X-Original-To: apmail-ctakes-dev-archive@www.apache.org Delivered-To: apmail-ctakes-dev-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 2CC89F6E1 for ; Wed, 21 Aug 2013 17:00:37 +0000 (UTC) Received: (qmail 44283 invoked by uid 500); 21 Aug 2013 17:00:37 -0000 Delivered-To: apmail-ctakes-dev-archive@ctakes.apache.org Received: (qmail 44232 invoked by uid 500); 21 Aug 2013 17:00:35 -0000 Mailing-List: contact dev-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: dev@ctakes.apache.org Delivered-To: mailing list dev@ctakes.apache.org Received: (qmail 44219 invoked by uid 99); 21 Aug 2013 17:00:34 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Wed, 21 Aug 2013 17:00:34 +0000 X-ASF-Spam-Status: No, hits=-0.0 required=5.0 tests=SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (athena.apache.org: domain of Guergana.Savova@childrens.harvard.edu designates 134.174.20.73 as permitted sender) Received: from [134.174.20.73] (HELO mailsmtp3.childrenshospital.org) (134.174.20.73) by apache.org (qpsmtpd/0.29) with ESMTP; Wed, 21 Aug 2013 17:00:29 +0000 Received: from pps.filterd (mailsmtp3.childrenshospital.org [127.0.0.1]) by mailsmtp3.childrenshospital.org (8.14.5/8.14.5) with SMTP id r7LGwZha026850 for ; Wed, 21 Aug 2013 12:59:57 -0400 Received: from smtpndc1.chboston.org (smtpndc1.chboston.org [10.20.50.104]) by mailsmtp3.childrenshospital.org with ESMTP id 1ecbw57k49-1 (version=TLSv1/SSLv3 cipher=AES256-SHA bits=256 verify=NOT) for ; Wed, 21 Aug 2013 12:59:57 -0400 Received: from pps.filterd (smtpndc1.chboston.org [127.0.0.1]) by smtpndc1.chboston.org (8.14.5/8.14.5) with SMTP id r7LGtP3r028949 for ; Wed, 21 Aug 2013 12:59:57 -0400 Received: from chexhubcasbdc1.chboston.org (chexhubcasbdc1.chboston.org [10.20.18.71]) by smtpndc1.chboston.org with ESMTP id 1dsypa90ty-1 (version=TLSv1/SSLv3 cipher=AES128-SHA bits=128 verify=NOT) for ; Wed, 21 Aug 2013 12:59:57 -0400 Received: from CHEXMBX3A.CHBOSTON.ORG ([fe80::8df1:9966:b0b0:841d]) by CHEXHUBCASBDC1.CHBOSTON.ORG ([::1]) with mapi id 14.02.0342.003; Wed, 21 Aug 2013 12:59:56 -0400 From: "Savova, Guergana" To: "dev@ctakes.apache.org" Subject: RE: ctakes-examples project? Thread-Topic: ctakes-examples project? Thread-Index: AQHOnoeM47uvOU+6kkGxykMaLQVaXpmgJIiA//+96jA= Date: Wed, 21 Aug 2013 16:59:56 +0000 Message-ID: References: In-Reply-To: Accept-Language: en-US Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [10.7.2.138] Content-Type: text/plain; charset="us-ascii" Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Proofpoint-Virus-Version: vendor=fsecure engine=2.50.10432:5.10.8794,1.0.431,0.0.0000 definitions=2013-08-21_07:2013-08-21,2013-08-21,1970-01-01 signatures=0 X-Proofpoint-Virus-Version: vendor=fsecure engine=2.50.10432:5.10.8794,1.0.431,0.0.0000 definitions=2013-08-21_07:2013-08-21,2013-08-21,1970-01-01 signatures=0 X-Virus-Checked: Checked by ClamAV on apache.org We will look at the metadata info. Some of it is critical for the annotatio= ns (e.g. docTime). Thank you, John. --Guergana -----Original Message----- From: John Green [mailto:john.travis.green@gmail.com]=20 Sent: Wednesday, August 21, 2013 12:56 PM To: dev@ctakes.apache.org Subject: Re: ctakes-examples project? So far I have about 15 notes done. Im submitting them slow as, after I said= they were done I decided one last review of each for gross errors and comp= leteness would be in order. Im slowly working through the proof read of eac= h now. Just FYI if anyone was wondering. I don't know what the coders can do with the metadata I included at the top= of each note. I thought it would be useful, however, to attempt to describ= e the data with these additional metrics. Maybe they are already included v= ectors in the gold-standard annotation. JG On Wed, Aug 21, 2013 at 12:00 PM, Pei Chen wrote: > John is creating example clinical notes [1]... and I believe Guergana's= =20 > group and co. will create gold standard annotations for them (as=20 > training examples)? > > Where would be a good home for something like this? > > What do folks think about creating a separate project called=20 > ctakes-examples? An alternative might be to put it in one of the test=20 > projects? > [1] https://issues.apache.org/jira/browse/CTAKES-223 > > --Pei >