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From Kannan Thiagarajan <kanna...@gmail.com>
Subject Re: Medication Route in DrugNER
Date Wed, 17 Jul 2013 19:30:06 GMT
Hello,

On a related topic, is there a way to feed additional words to the FSMs via
an external interface such as a file? If not, is this something that can be
considered for future?

Thanks





On Wed, Jul 17, 2013 at 2:15 PM, Masanz, James J. <Masanz.James@mayo.edu>wrote:

>
> I checked with Sean and he doesn't remember if it was intentional that
>  "iv"  was not listed.
>
> I have no objection to adding "iv" to the iv_singleInjectWordSet.
>
> -- James
>
> -----Original Message-----
> From: dev-return-1774-Masanz.James=mayo.edu@ctakes.apache.org [mailto:
> dev-return-1774-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf Of
> Masanz, James J.
> Sent: Wednesday, July 17, 2013 2:04 PM
> To: 'dev@ctakes.apache.org'
> Subject: RE: Medication Route in DrugNER
>
> Sean,
>
> Do you recall if there was a reason "iv" was not included  in the list
> originally?
>
> To clarify, the snippet Pei shows below is what it would look like if he
> added it; the snippet is not showing what the code already looks like.
> So technically "IV" would not be added, "iv" would be.
>
> Also, fyi, iv_singleInjectWordSet already includes " subcutaneously" too.
>
> Pei, looks like there is a copy/paste error, that subcutaneously is
> already listed twice for iv_singleInjectWordSet .
> Could you remove the extra one as long as you are in that file?
>
> -- James
>
> -----Original Message-----
> From: dev-return-1773-Masanz.James=mayo.edu@ctakes.apache.org [mailto:
> dev-return-1773-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf Of
> Chen, Pei
> Sent: Wednesday, July 17, 2013 1:53 PM
> To: dev@ctakes.apache.org
> Subject: RE: Medication Route in DrugNER
>
> Any objections to adding 'IV' to the Inject/Intervenious machines-
>  RouteFSM.java?
>                 iv_singleInjectWordSet.add("intervenously");
>                 iv_singleInjectWordSet.add("injection");
>                 iv_singleInjectWordSet.add("injections");
>                 iv_singleInjectWordSet.add("injected");
>                 iv_singleInjectWordSet.add("iv");
> I just tested it out that it worked fine after we added iv to the FSM.
> I'll create a Jira in the meantime.
>
> --Pei
>
> > -----Original Message-----
> > From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
> > Sent: Wednesday, July 17, 2013 1:59 PM
> > To: dev@ctakes.apache.org
> > Subject: RE: Medication Route in DrugNER
> >
> > info from Sean:
> >
> > I would expect 'intravenous' to be found, but 'IV' isn't included in the
> list of
> > route FSM
> >
> > IV might be being found as a roman numeral
> >
> > ________________________________________
> > From: dev-return-1771-Masanz.James=mayo.edu@ctakes.apache.org [dev-
> > return-1771-Masanz.James=mayo.edu@ctakes.apache.org] on behalf of
> > Chen, Pei [Pei.Chen@childrens.harvard.edu]
> > Sent: Wednesday, July 17, 2013 11:08 AM
> > To: dev@ctakes.apache.org
> > Subject: Medication Route in DrugNER
> >
> > Does anyone recall if the intravenous or IV could be picked up as a
> route by
> > the DrugNER module?
> > For example: "cisplatin 2.5 mg IV every 24 hours." IV gets picked up as a
> > Medication Frequency (4) instead of Route.
> >
> > --Pei
> >
>
>


-- 
Best Regards
Kannan Thiagarajan

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