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From "Chen, Pei" <Pei.C...@childrens.harvard.edu>
Subject RE: Medication Route in DrugNER
Date Wed, 17 Jul 2013 19:46:33 GMT
Moving the Drug signature FSM terms to an external file would be a great idea.
It depends on when MedER (https://issues.apache.org/jira/browse/CTAKES-95) will ready as I
think that should replace the current DrugNER- any ideas when that will be ready?

--Pei

> -----Original Message-----
> From: Kannan Thiagarajan [mailto:kannanth@gmail.com]
> Sent: Wednesday, July 17, 2013 3:31 PM
> To: dev@ctakes.apache.org
> Subject: Re: Medication Route in DrugNER
> 
> Hello,
> 
> On a related topic, is there a way to feed additional words to the FSMs via an
> external interface such as a file? If not, is this something that can be
> considered for future?
> 
> Thanks
> 
> 
> 
> 
> 
> On Wed, Jul 17, 2013 at 2:15 PM, Masanz, James J.
> <Masanz.James@mayo.edu>wrote:
> 
> >
> > I checked with Sean and he doesn't remember if it was intentional that
> > "iv"  was not listed.
> >
> > I have no objection to adding "iv" to the iv_singleInjectWordSet.
> >
> > -- James
> >
> > -----Original Message-----
> > From: dev-return-1774-Masanz.James=mayo.edu@ctakes.apache.org
> [mailto:
> > dev-return-1774-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf
> Of
> > Masanz, James J.
> > Sent: Wednesday, July 17, 2013 2:04 PM
> > To: 'dev@ctakes.apache.org'
> > Subject: RE: Medication Route in DrugNER
> >
> > Sean,
> >
> > Do you recall if there was a reason "iv" was not included  in the list
> > originally?
> >
> > To clarify, the snippet Pei shows below is what it would look like if
> > he added it; the snippet is not showing what the code already looks like.
> > So technically "IV" would not be added, "iv" would be.
> >
> > Also, fyi, iv_singleInjectWordSet already includes " subcutaneously" too.
> >
> > Pei, looks like there is a copy/paste error, that subcutaneously is
> > already listed twice for iv_singleInjectWordSet .
> > Could you remove the extra one as long as you are in that file?
> >
> > -- James
> >
> > -----Original Message-----
> > From: dev-return-1773-Masanz.James=mayo.edu@ctakes.apache.org
> [mailto:
> > dev-return-1773-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf
> Of
> > Chen, Pei
> > Sent: Wednesday, July 17, 2013 1:53 PM
> > To: dev@ctakes.apache.org
> > Subject: RE: Medication Route in DrugNER
> >
> > Any objections to adding 'IV' to the Inject/Intervenious machines-
> > RouteFSM.java?
> >                 iv_singleInjectWordSet.add("intervenously");
> >                 iv_singleInjectWordSet.add("injection");
> >                 iv_singleInjectWordSet.add("injections");
> >                 iv_singleInjectWordSet.add("injected");
> >                 iv_singleInjectWordSet.add("iv"); I just tested it out
> > that it worked fine after we added iv to the FSM.
> > I'll create a Jira in the meantime.
> >
> > --Pei
> >
> > > -----Original Message-----
> > > From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
> > > Sent: Wednesday, July 17, 2013 1:59 PM
> > > To: dev@ctakes.apache.org
> > > Subject: RE: Medication Route in DrugNER
> > >
> > > info from Sean:
> > >
> > > I would expect 'intravenous' to be found, but 'IV' isn't included in
> > > the
> > list of
> > > route FSM
> > >
> > > IV might be being found as a roman numeral
> > >
> > > ________________________________________
> > > From: dev-return-1771-Masanz.James=mayo.edu@ctakes.apache.org
> [dev-
> > > return-1771-Masanz.James=mayo.edu@ctakes.apache.org] on behalf of
> > > Chen, Pei [Pei.Chen@childrens.harvard.edu]
> > > Sent: Wednesday, July 17, 2013 11:08 AM
> > > To: dev@ctakes.apache.org
> > > Subject: Medication Route in DrugNER
> > >
> > > Does anyone recall if the intravenous or IV could be picked up as a
> > route by
> > > the DrugNER module?
> > > For example: "cisplatin 2.5 mg IV every 24 hours." IV gets picked up
> > > as a Medication Frequency (4) instead of Route.
> > >
> > > --Pei
> > >
> >
> >
> 
> 
> --
> Best Regards
> Kannan Thiagarajan

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