Mailing-List: contact dev-help@ctakes.apache.org; run by ezmlm
Precedence: bulk
Reply-To: dev@ctakes.apache.org
Received-SPF: pass (nike.apache.org: domain of girinambari@gmail.com
 designates 209.85.223.170 as permitted sender)
MIME-Version: 1.0
In-Reply-To: 
 <CACBYxKJvG_qLGPjyLb5OdPb5_4g_YvT3njEiyaV-NZ43TprjRQ@mail.gmail.com>
References: 
 <CACBYxKJvG_qLGPjyLb5OdPb5_4g_YvT3njEiyaV-NZ43TprjRQ@mail.gmail.com>
From: Girivaraprasad Nambari <girinambari@gmail.com>
Date: Wed, 19 Jun 2013 15:46:19 -0400
Message-ID: 
 <CA+kOeV5pv-zktOYEnbawfdrnjHLQbOJmDaeKDe1FUDBuW_G3FQ@mail.gmail.com>
Subject: Re: docs on running Clinical Document Pipeline from Java?
To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
Content-Type: multipart/alternative; boundary=047d7bdc1b609841a804df8716f7

--047d7bdc1b609841a804df8716f7
Content-Type: text/plain; charset=ISO-8859-1

Hi,

Welcome to ctakes.

There was a similar discussion initiated by me few months ago (you may be
able to find out if you browse through old discussions) . Here is response
form Pei Chen & ctakes community:

It is not quite prime time ready but, take a look peek at the below (It
uses uimaFIT to do the above):

**

http://svn.apache.org/repos/asf/ctakes/sandbox/ctakes-gui/src/main/java/org/chboston/cnlp/ctakes/gui/service/LauncherService.java
****

** Essentially, it boils down to a few lines of code:

AnalysisEngine aggregateAE = AnalysisEngineFactory.createAggregate(****

               engines, componentNames, typeSystemDescription, null,****

               new SofaMapping[0]);****

              ****

JCas jcas = aggregateAE.newJCas();****

jcas.setDocumentText(doc.getText());****

aggregateAE.process(jcas);


We need to start from UIMA and UIMAfit to get some basic understanding,
then using ctakes component will be easy.

Good luck!

Thank you,

Giri


On Wed, Jun 19, 2013 at 3:17 PM, Sandy Ryza <sandy.ryza@cloudera.com> wrote:

> Hi cTAKES folks,
>
> I am trying to figure out how to run the Clinical Document Pipeline from
> Java.  All the documentation I have found so far has been about how to do
> this through a GUI.  Is there anything on how to run the pipeline
> programmatically?
>
> thanks for any help!
> Sandy
>

--047d7bdc1b609841a804df8716f7--