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From Kannan Thiagarajan <kanna...@gmail.com>
Subject Re: FileNotFoundException: org/apache/ctakes/dictionary/lookup/rxnorm_index
Date Fri, 12 Apr 2013 17:02:54 GMT
James,

Thanks for getting back.

I checked out from SVN.
I have not tried other UMLS pipelines
I downloaded the ZIP, but did not extract/merge into workspace  since I saw
a bunch of "-res" folders in the workspace, I was not sure if this step was
needed anymore.

Thanks for looking into this.

Best Regards
Kannan Thiagarajan




On Fri, Apr 12, 2013 at 11:42 AM, Masanz, James J. <Masanz.James@mayo.edu>wrote:

> I too see that error in my workspace that I checked out from SVN when I
> try to use that pipeline.
>
> Some questions so I can describe corrective steps appropriately
> - did you check out from SVN or did you download and install from an
> install artifact?
> - have you been able to run any other *UMLSProcessor pipelines?
> - if you downloaded the external resources described in the  "Download
> cTAKES 3.0 Dictionaries and models" step [1], where did you extract them to?
>
>
> [1] http://s.apache.org/ctakes3.0resourcesStep
>
>
> -- James
>
>
> > -----Original Message-----
> > From: dev-return-1509-Masanz.James=mayo.edu@ctakes.apache.org [mailto:
> dev-
> > return-1509-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf Of Kannan
> > Thiagarajan
> > Sent: Friday, April 12, 2013 9:57 AM
> > To: dev@ctakes.apache.org
> > Subject: FileNotFoundException:
> > org/apache/ctakes/dictionary/lookup/rxnorm_index
> >
> > Hello Team,
> >
> > I was trying out the CVD on the DrugNER
> > (DrugAggregatePlaintextUMLSProcessor.xml) pipeline and I got a
> > FileNotFoundException on the rxnorm_index.
> >
> > First I was suspecting a Workspace setup issue on my part but then I
> > noticed the following JIRA
> >
> > https://issues.apache.org/jira/browse/CTAKES-156
> >
> > I'm guessing a fix maybe available in a future release. My question is,
> is
> > there a workaround or a quick fix I can perform in my workspace.
> >
> > Appreciate any pointers to get around this issue.
> >
> > Thanks & Best Regards
> > Kannan Thiagarajan
>



-- 
Best Regards
Kannan Thiagarajan

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