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From giri vara prasad nambari <girinamb...@gmail.com>
Subject Re: How to relate concept types?
Date Mon, 22 Apr 2013 02:36:07 GMT
Thanks Pei!

Do you guys have any input on how could we achieve this? Do you think we
can achieve this by writing own AE? If so, any references available?

Thank you,
Giri




On Sun, Apr 21, 2013 at 8:03 PM, Chen, Pei
<Pei.Chen@childrens.harvard.edu>wrote:

> Yes. It currently only identifies location_of and degree_of relationships.
>
> Sent from my iPhone
>
> On Apr 21, 2013, at 4:59 PM, "giri vara prasad nambari" <
> girinambari@gmail.com> wrote:
>
> > Hi Pei,
> >
> > Thanks for your response even on weekend. We really appreciate it.
> >
> > You are correct, I am seeing BinaryTextRelation, which lists Knee & Pain
> > relation with location_of relationship.
> >
> > But I was looking for something which could relate A*sprin* with *Knee
> Pain*.
> > This way in my client program I can map *Asprin* is for *Knee Pain, *not
> > for *Hyperlipidemia.*
> > *
> > *
> > I hope you got what I am looking for. Please let me know if you need more
> > information.
> >
> > Thank you for your time and help.
> >
> > Thank you,
> > Giri
> >
> >
> > On Sun, Apr 21, 2013 at 3:58 PM, Chen, Pei
> > <Pei.Chen@childrens.harvard.edu>wrote:
> >
> >> Hi Giri,
> >> If you run the sample desc pipeline from the ctakes-relation-extractor
> >> project, it should create a list of BinaryTextRelations with
> >> Entity/EventMention as arguments (with an example like "pain in the
> knee",
> >> it should should pick up a location_of relationship)
> >> I can send you the exact details if you need tomorrow once I have access
> >> to a PC.
> >> HTH.
> >>
> >> Sent from my iPhone
> >>
> >> On Apr 21, 2013, at 11:57 AM, "giri vara prasad nambari" <
> >> girinambari@gmail.com<mailto:girinambari@gmail.com>> wrote:
> >>
> >> Hi,
> >>
> >> I ran "RelationExtractorAggregate" on the example text provided in
> ctakes
> >> user-guide in CVD as well as my sample java client.
> >>
> >> I am not seeing either "Location_of " of "Degree_of" attributes in
> >> results. Am I missing something?
> >>
> >> Do I need to relation-extractor after ClinicalPipeline? If so, how
> could I
> >> simulate this flow in CVD?
> >>
> >> Any input would be appreciated.
> >>
> >> Thanks for your time and help.
> >>
> >> Thank you,
> >> Giri
> >>
> >>
> >> On Fri, Apr 19, 2013 at 3:58 PM, giri vara prasad nambari <
> >> girinambari@gmail.com<mailto:girinambari@gmail.com>> wrote:
> >> Thanks Pie! I will check this tonight.
> >>
> >> I heard there is lock down over there in Boston. Be safe.
> >>
> >> Thank you,
> >> Giri
> >>
> >>
> >> On Fri, Apr 19, 2013 at 3:49 PM, Chen, Pei <
> Pei.Chen@childrens.harvard.edu
> >> <mailto:Pei.Chen@childrens.harvard.edu>> wrote:
> >> Hi Giri,
> >> 1)  There is currently a ctakes-relation-extractor component that
> extracts
> >> Location_of and Degree_of between UMLS concepts.
> >> 2)  For all of the available types, check out the type system UML:
> >>
> >>
> http://ctakes.apache.org/user-faqs.html#what-are-the-available-attributes-types-in-ctakes
> >>
> >> ________________________________
> >> From: giri vara prasad nambari [girinambari@gmail.com<mailto:
> >> girinambari@gmail.com>]
> >> Sent: Friday, April 19, 2013 12:50 AM
> >> To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>; user
> >> Subject: How to relate concept types?
> >>
> >> Hi Team,
> >>
> >> How are you?
> >>
> >> 1) While continuing with experiments I am stuck at relating concepts
> from
> >> annotated text , example, relating PROBLEM and TREATMENT concepts.
> >>
> >> For example, while running the example text we have in ctakes user
> guide,
> >> we are getting
> >> Hyperlipidemia as PROBLEM
> >> Pain (Knee)  also as PROBLEM
> >> and
> >> ASPRIN as TRETMENT
> >>
> >> Now, I am struggling to figure out how to associate ASPRIN to KNEE PAIN?
> >> while extracting Features. Any other annotators (or) AE available for
> this
> >> purpose?
> >>
> >> Any inputs would be really helpful.
> >>
> >> 2) Is there any documentation which lists all possible CONCEPT TYPE
> >> values?
> >>
> >> Thanks for your time and help.
> >>
> >> Thank you,
> >> Giri
> >>
> >>
> >>
>

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