ctakes-commits mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From seanfi...@apache.org
Subject svn commit: r1719760 [1/4] - in /ctakes/sandbox/dictionary-gui: data/ data/default/ data/optional/ data/small/ data/tim/ data/tiny/ lib/ src/main/java/org/apache/ctakes/dictionary/creator/gui/ctakes/ src/main/java/org/apache/ctakes/dictionary/creator/g...
Date Sun, 13 Dec 2015 04:27:44 GMT
Author: seanfinan
Date: Sun Dec 13 04:27:42 2015
New Revision: 1719760

URL: http://svn.apache.org/viewvc?rev=1719760&view=rev
Log:
Fully working prototype

Added:
    ctakes/sandbox/dictionary-gui/data/
    ctakes/sandbox/dictionary-gui/data/default/
    ctakes/sandbox/dictionary-gui/data/default/ConversionSources.txt
    ctakes/sandbox/dictionary-gui/data/default/CtakesDrugTuis.txt
    ctakes/sandbox/dictionary-gui/data/default/CtakesSnomedTuis.txt
    ctakes/sandbox/dictionary-gui/data/default/CtakesSources.txt
    ctakes/sandbox/dictionary-gui/data/default/ModifierSuffixes.txt
    ctakes/sandbox/dictionary-gui/data/default/RemovalColonTriggers.txt
    ctakes/sandbox/dictionary-gui/data/default/RemovalFunctionTriggers.txt
    ctakes/sandbox/dictionary-gui/data/default/RemovalPrefixTriggers.txt
    ctakes/sandbox/dictionary-gui/data/default/RemovalSuffixTriggers.txt
    ctakes/sandbox/dictionary-gui/data/default/RightAbbreviations.txt
    ctakes/sandbox/dictionary-gui/data/default/UnwantedPrefixes.txt
    ctakes/sandbox/dictionary-gui/data/default/UnwantedSuffixes.txt
    ctakes/sandbox/dictionary-gui/data/optional/
    ctakes/sandbox/dictionary-gui/data/optional/CtakesAllTuis.txt
    ctakes/sandbox/dictionary-gui/data/optional/CtakesAnatTuis.txt
    ctakes/sandbox/dictionary-gui/data/optional/CtakesDisoTuis.txt
    ctakes/sandbox/dictionary-gui/data/optional/CtakesFindTuis.txt
    ctakes/sandbox/dictionary-gui/data/optional/CtakesProcTuis.txt
    ctakes/sandbox/dictionary-gui/data/optional/UmlsAllSources.txt
    ctakes/sandbox/dictionary-gui/data/optional/UmlsAllTuis.txt
    ctakes/sandbox/dictionary-gui/data/small/
    ctakes/sandbox/dictionary-gui/data/small/ConversionSources.txt
    ctakes/sandbox/dictionary-gui/data/small/CtakesDrugTuis.txt
    ctakes/sandbox/dictionary-gui/data/small/CtakesSnomedTuis.txt
    ctakes/sandbox/dictionary-gui/data/small/CtakesSources.txt
    ctakes/sandbox/dictionary-gui/data/small/ModifierSuffixes.txt
    ctakes/sandbox/dictionary-gui/data/small/RemovalColonTriggers.txt
    ctakes/sandbox/dictionary-gui/data/small/RemovalPrefixTriggers.txt
    ctakes/sandbox/dictionary-gui/data/small/RemovalSuffixTriggers.txt
    ctakes/sandbox/dictionary-gui/data/small/RightAbbreviations.txt
    ctakes/sandbox/dictionary-gui/data/small/UnwantedPrefixes.txt
    ctakes/sandbox/dictionary-gui/data/small/UnwantedSuffixes.txt
    ctakes/sandbox/dictionary-gui/data/tim/
    ctakes/sandbox/dictionary-gui/data/tim/ConversionSources.txt
    ctakes/sandbox/dictionary-gui/data/tim/ModifierSuffixes.txt
    ctakes/sandbox/dictionary-gui/data/tim/RemovalColonTriggers.txt
    ctakes/sandbox/dictionary-gui/data/tim/RemovalFunctionTriggers.txt
    ctakes/sandbox/dictionary-gui/data/tim/RemovalPrefixTriggers.txt
    ctakes/sandbox/dictionary-gui/data/tim/RemovalSuffixTriggers.txt
    ctakes/sandbox/dictionary-gui/data/tim/RightAbbreviations.txt
    ctakes/sandbox/dictionary-gui/data/tim/TimDrugTuis.txt
    ctakes/sandbox/dictionary-gui/data/tim/TimNonDrugSources.txt
    ctakes/sandbox/dictionary-gui/data/tim/TimOtherTuis.txt
    ctakes/sandbox/dictionary-gui/data/tim/TimSpecificTuis.txt
    ctakes/sandbox/dictionary-gui/data/tim/UnwantedPrefixes.txt
    ctakes/sandbox/dictionary-gui/data/tim/UnwantedSuffixes.txt
    ctakes/sandbox/dictionary-gui/data/tim/emptyAnatTuis.txt
    ctakes/sandbox/dictionary-gui/data/tiny/
    ctakes/sandbox/dictionary-gui/data/tiny/ConversionSources.txt
    ctakes/sandbox/dictionary-gui/data/tiny/CtakesAnatTuis.txt
    ctakes/sandbox/dictionary-gui/data/tiny/CtakesDrugTuis.txt
    ctakes/sandbox/dictionary-gui/data/tiny/CtakesSnomedTuis.txt
    ctakes/sandbox/dictionary-gui/data/tiny/CtakesSources.txt
    ctakes/sandbox/dictionary-gui/data/tiny/ModifierSuffixes.txt
    ctakes/sandbox/dictionary-gui/data/tiny/RemovalColonTriggers.txt
    ctakes/sandbox/dictionary-gui/data/tiny/RemovalFunctionTriggers.txt
    ctakes/sandbox/dictionary-gui/data/tiny/RemovalPrefixTriggers.txt
    ctakes/sandbox/dictionary-gui/data/tiny/RemovalSuffixTriggers.txt
    ctakes/sandbox/dictionary-gui/data/tiny/RightAbbreviations.txt
    ctakes/sandbox/dictionary-gui/data/tiny/UnwantedPrefixes.txt
    ctakes/sandbox/dictionary-gui/data/tiny/UnwantedSuffixes.txt
    ctakes/sandbox/dictionary-gui/lib/hsqldb_1_8_0_10.jar
      - copied unchanged from r1719001, ctakes/sandbox/dictionarytool/lib/hsqldb_1_8_0_10.jar
    ctakes/sandbox/dictionary-gui/lib/junit-4.12.jar   (with props)
    ctakes/sandbox/dictionary-gui/lib/log4j-api-2.5.jar   (with props)
    ctakes/sandbox/dictionary-gui/lib/log4j-core-2.5.jar   (with props)
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/ctakes/DictionaryBuilder.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/ctakes/DictionaryXmlWriter.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/umls/Concept.java
      - copied, changed from r1716234, ctakes/trunk/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/concept/DefaultConcept.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/umls/ConceptMapFactory.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/umls/CuiCodeUtil.java
      - copied, changed from r1719002, ctakes/sandbox/dictionarytool/src/org/apache/ctakes/dictionarytool/util/CuiCodeUtil.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/umls/MrconsoParser.java
      - copied, changed from r1719002, ctakes/sandbox/dictionarytool/src/org/apache/ctakes/dictionarytool/reader/UmlsTextsForCuisReader.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/umls/MrstyParser.java
      - copied, changed from r1719001, ctakes/sandbox/dictionarytool/src/org/apache/ctakes/dictionarytool/util/CuiTuiUtil.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/umls/TuiCellRenderer.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/umls/UmlsTermUtil.java
      - copied, changed from r1719001, ctakes/sandbox/dictionarytool/src/org/apache/ctakes/dictionarytool/util/UmlsTermUtil.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/umls/Vocabulary.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/HsqlUtil.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/JdbcUtil.java
      - copied, changed from r1719001, ctakes/sandbox/dictionarytool/src/org/apache/ctakes/dictionarytool/util/JdbcUtil.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/LambdaUtil.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/RareWordDbWriter.java
      - copied, changed from r1719001, ctakes/sandbox/dictionarytool/src/org/apache/ctakes/dictionarytool/writer/RareWordDbWriter.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/RareWordUtil.java
      - copied, changed from r1719001, ctakes/sandbox/dictionarytool/src/org/apache/ctakes/dictionarytool/util/RareWordUtil.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/TextTokenizer.java
      - copied, changed from r1719001, ctakes/sandbox/dictionarytool/src/org/apache/ctakes/dictionarytool/util/token/TextTokenizer.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/collection/
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/collection/ArrayListMap.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/collection/CollectionCreator.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/collection/CollectionCreatorFactory.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/collection/CollectionMap.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/collection/DefaultCollectionMap.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/collection/EnumSetMap.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/collection/HashSetMap.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/util/collection/ImmutableCollectionMap.java
Modified:
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/main/MainPanel.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/umls/SourceTableModel.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/umls/Tui.java
    ctakes/sandbox/dictionary-gui/src/main/java/org/apache/ctakes/dictionary/creator/gui/umls/TuiTableModel.java

Added: ctakes/sandbox/dictionary-gui/data/default/ConversionSources.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/default/ConversionSources.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/default/ConversionSources.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/default/ConversionSources.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,4 @@
+ICD10PCS
+ICD9CM
+RXNORM
+SNOMEDCT

Added: ctakes/sandbox/dictionary-gui/data/default/CtakesDrugTuis.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/default/CtakesDrugTuis.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/default/CtakesDrugTuis.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/default/CtakesDrugTuis.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,22 @@
+T109
+T110
+T114
+T115
+T116
+T118
+T119
+T121
+T122
+T123
+T124
+T125
+T126
+T127
+T129
+T130
+T131
+T195
+T196
+T197
+T200
+T203

Added: ctakes/sandbox/dictionary-gui/data/default/CtakesSnomedTuis.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/default/CtakesSnomedTuis.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/default/CtakesSnomedTuis.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/default/CtakesSnomedTuis.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,36 @@
+// ANAT
+T021
+T022
+T023
+T024
+T025
+T026
+T029
+T030
+// DISO
+T019
+T020
+T037
+T047
+T048
+T049
+T050
+T190
+T191
+// FIND
+T033
+T034
+T040
+T041
+T042
+T043
+T044
+T045
+T046
+T056
+T057
+T184
+// PROC
+T059
+T060
+T061

Added: ctakes/sandbox/dictionary-gui/data/default/CtakesSources.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/default/CtakesSources.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/default/CtakesSources.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/default/CtakesSources.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,2 @@
+SNOMEDCT
+SNOMEDCT_US

Added: ctakes/sandbox/dictionary-gui/data/default/ModifierSuffixes.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/default/ModifierSuffixes.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/default/ModifierSuffixes.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/default/ModifierSuffixes.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,15 @@
+( acute )
+( benign )
+( chronic )
+( clinical )
+( malignant )
+( partial )
+- acute
+- chronic
+, acute
+, bilateral
+, chronic
+, multiple
+, single
+ acute
+ chronic

Added: ctakes/sandbox/dictionary-gui/data/default/RemovalColonTriggers.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/default/RemovalColonTriggers.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/default/RemovalColonTriggers.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/default/RemovalColonTriggers.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,21 @@
+: - :
+: 24 hours :
+: 8 hours :
+: address :
+: arbitrary concentration :
+: duration of encounter :
+: duration of the study :
+: finding :
+: identifier :
+: impression / interpretation of study :
+: life of the unit :
+: mass :
+: number :
+: point in time :
+: prid :
+: pt :
+: substance concentration :
+: text :
+: type :
+: volume :
+: volume rate :

Added: ctakes/sandbox/dictionary-gui/data/default/RemovalFunctionTriggers.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/default/RemovalFunctionTriggers.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/default/RemovalFunctionTriggers.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/default/RemovalFunctionTriggers.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,4 @@
+] or [
+] & / or [
+) or (
+) & / or (
\ No newline at end of file

Added: ctakes/sandbox/dictionary-gui/data/default/RemovalPrefixTriggers.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/default/RemovalPrefixTriggers.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/default/RemovalPrefixTriggers.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/default/RemovalPrefixTriggers.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,3 @@
+deprecated 
+retired procedure
+

Added: ctakes/sandbox/dictionary-gui/data/default/RemovalSuffixTriggers.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/default/RemovalSuffixTriggers.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/default/RemovalSuffixTriggers.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/default/RemovalSuffixTriggers.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,34 @@
+- retired code
+- retired -
+- retired
+( reassigned )
+[ obsolete ]
+( deprecated )
+// Added for form cleanup 11/3/2014 spf
+( # _ _ _ )
+( / _ _ _ )
+( _ _ _ / )
+( j _ _ _ )
+( _ _ _ 0 , 2 )
+( _ _ _ 0 - 30 )
+( _ _ _ bpm )
+( _ _ _ cm )
+( _ _ _ _ cm )
+( _ _ _ _ _ cm )
+( _ _ _ cm2 )
+( _ _ _ degrees )
+( _ _ _ m2 )
+( _ _ _ mets )
+( _ _ _ min )
+( _ _ _ minutes each time )
+( _ _ _ per hpf )
+( minus _ _ _ )
+( _ _ _ ml / hr )
+( _ _ _ ml per second )
+( plus _ _ _ )
+( _ _ _ sec )
+: plus _ _ _
+_ _ _ %
+_ _ _ cm
+add _ _ _
+

Added: ctakes/sandbox/dictionary-gui/data/default/RightAbbreviations.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/default/RightAbbreviations.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/default/RightAbbreviations.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/default/RightAbbreviations.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,1178 @@
+ - health center
+ - health centre
+& [ cellulitis ear ]
+( % )
+( & [ aching leg syndrome ] )
+( & [ adenomyosis ] )
+( & [ ateliotic dwarf ] )
+( & [ bedwetting ] )
+( & [ cat liver fluke infection ] )
+( & [ cogan ' s syndrome ] )
+( & [ condyloma acuminatum ] )
+( & [ couvelaire uterus ] )
+( & [ dacryocystitis ] )
+( & [ growth hormone overproduction ] )
+( & [ hashimoto ' s disease ] )
+( & [ infertility ] )
+( & [ mistress ] )
+( & [ mongoloid ] )
+( & [ morning - after pill ] )
+( & [ nipple pain ] )
+( & [ obstetric varicose veins ] )
+( & [ panhypopituitarism ] )
+( & [ paranoid schizophrenia ] )
+( & [ parkinson gait ] )
+( & [ pelvic inflammatory disease ] )
+( & [ potty trained ] )
+( & [ regional enteritis ] )
+( & [ scotoma ] )
+( & [ scurvy ] )
+( & [ subarachnoid birth haemorrhage ] )
+( & [ subarachnoid birth hemorrhage ] )
+( & [ tangier disease ] )
+( & [ unspecified female pelvic peritonitis ] )
+( & [ vibration white finger ] )
+( & [ whispering ] )
+( & allergic rhinitis due to pollens )
+( & anal carcinoma )
+( & ascariasis )
+( & hidradenitis suppurativa )
+( & lung diseases )
+( & nasal reconstruction )
+( & serum blood tests )
+( & sore throat symptom )
+( & trench foot )
+( + )
+( - )
+( 3m syndrome )
+( 5p11 - pter )
+( 65 + )
+( 6mp )
+( a )
+( aa )
+( aaa )
+( aas )
+( abbreviation )
+( abe )
+( abgs )
+( abpa )
+( abve regimen )
+( aca )
+( aci )
+( acne )
+( acromegaly )
+( actg )
+( acv )
+( adamts13 )
+( adhd )
+( adi )
+( adl )
+( adrenoleukodystrophy )
+( ads )
+( af )
+( afm )
+( aft )
+( ag )
+( agus )
+( ahds )
+( ahp )
+( aidp )
+( aids )
+( aih )
+( aild )
+( ain iii )
+( aivr )
+( ajcc )
+( ald )
+( all )
+( alps2b )
+( als )
+( alspac )
+( ambulance )
+( amc )
+( ami )
+( aml )
+( aml - m2 )
+( amyotrophic lateral sclerosis )
+( anll )
+( ans )
+( aod )
+( apache )
+( apc )
+( aps )
+( arc )
+( ards )
+( armd )
+( artificial intelligence )
+( asd )
+( ash )
+( asi )
+( assault )
+( asv )
+( atm )
+( atu )
+( au )
+( auc )
+( bac )
+( baep )
+( bal )
+( bcg )
+( bednar tumor )
+( bei )
+( beta - thalassemia major )
+( beta - thalassemia minor )
+( beta thalassemia major )
+( beta thalassemia minor )
+( bidirectional glenn procedure )
+( bims )
+( biparietal circumference )
+( blennorrhagica )
+( blv )
+( blvr )
+( bmi )
+( boop )
+( boundary )
+( bovine spongiform encephalopathy )
+( bpd )
+( bph )
+( bq )
+( brazzaville )
+( bric2 )
+( bse )
+( btu )
+( bun ) ( mpm - a )
+( buschke - lowenstein )
+( c )
+( cabg )
+( cad )
+( cah )
+( calcified structure )
+( calorie fast )
+( cam )
+( canine roundworms )
+( capd )
+( cardiorsp )
+( cast )
+( cav )
+( cbas1 )
+( cbas2 )
+( cbas3 )
+( cbc )
+( ccd )
+( ccs )
+( ccs - a )
+( cd )
+( cdc )
+( cdc - d )
+( cdc - h )
+( cdc - j )
+( cdc - k )
+( cdd )
+( cdt )
+( cdt - 4 )
+( ceh )
+( central processing unit of computer system )
+( cep )
+( cerebral palsy )
+( cerebroocular dysgenesis )
+( cerebrovascular accident )
+( cf )
+( cfav )
+( cfr )
+( cfs )
+( cfu )
+( cg )
+( cga )
+( cgp )
+( cgy )
+( chf )
+( child add )
+( child disability benefits )
+( chl - b )
+( chl - c )
+( chl - d )
+( chn )
+( ci )
+( cidi )
+( cidp )
+( cin )
+( cin - 1 )
+( cis )
+( ckd )
+( cl )
+( clabsi )
+( climate )
+( cll )
+( cm )
+( cm2 )
+( cmc - d )
+( cml )
+( cmt )
+( cmv )
+( cn )
+( co )
+( coat )
+( col - a )
+( commission on cancer )
+( committee )
+( company )
+( complex regional pain syndromes )
+( copd )
+( costa )
+( costart )
+( cp )
+( cp regimen )
+( cpap )
+( cpeo )
+( cpm )
+( cpr )
+( cps )
+( cpt )
+( crbsi )
+( creutzfeldt - jakob disease )
+( creutzfeldt jakob disease )
+( crf )
+( crna )
+( crt )
+( csf )
+( csr )
+( cst )
+( ctg )
+( cts )
+( cup )
+( cvs )
+( cwp - d )
+( da )
+( datum presentation )
+( db )
+( dbms )
+( deca regimen )
+( deeds )
+( degos syndrome )
+( destruens )
+( dfpm )
+( dfpt )
+( dg )
+( dialysis treatment adequacy measure )
+( dic )
+( dicom )
+( difference )
+( dip )
+( dis )
+( discharge status = dead )
+( dish )
+( disorders of initiating and maintaining sleep )
+( distress of human spirit )
+( dl )
+( dle )
+( dm )
+( dmd )
+( dmm )
+( doe )
+( dpi )
+( drg )
+( dril )
+( drn )
+( drs )
+( dsap )
+( dsm )
+( dur )
+( dvt )
+( dwi )
+( dwmri )
+( dx )
+( e coli )
+( ea1 )
+( ea2 )
+( eae )
+( eap )
+( ebv )
+( ecg / ekg )
+( ecmo )
+( ect )
+( eds )
+( edwards type iii )
+( eeg )
+( ef )
+( ego )
+( ehec )
+( ehi )
+( eia )
+( ekg , ecg )
+( electrical injury )
+( emd )
+( emit )
+( emt )
+( eng )
+( ent )
+( environment / location )
+( eoe )
+( eog )
+( epec )
+( epi )
+( epidermolytic palmoplantar keratoderma )
+( epps )
+( epsp )
+( er )
+( era )
+( ercp )
+( erg )
+( erp )
+( erpf )
+( ert )
+( esl )
+( esp )
+( esr )
+( esrd )
+( estimated fetal weight )
+( estimated fetal weight 2 )
+( eswl )
+( etec )
+( ev )
+( eva )
+( experimental allergic neuritis )
+( experimental autoimmune neuritis )
+( extracorporeal shockwave lithotripsy )
+( f1 )
+( f2 )
+( f3o )
+( f3t )
+( falls risk assessment score for the elderly )
+( fas )
+( fast )
+( fcrs )
+( feline roundworms )
+( felv )
+( femur length )
+( fetal alcohol effects )
+( fetal trunk area )
+( fevc )
+( fg )
+( fifth disease )
+( figlu - uria )
+( fio2 )
+( fish )
+( fiv )
+( fl )
+( fldem )
+( fluid analysis )
+( fluorescence recovery after photobleaching )
+( fm )
+( fmc )
+( fmqai )
+( fms )
+( fo )
+( foc )
+( formation of excess fibrous connective tissue )
+( fp )
+( fqhc )
+( french foot )
+( frontal assessment battery )
+( fuo )
+( g )
+( g / mol )
+( gabg )
+( gan )
+( gan1 )
+( gbm )
+( gbs )
+( gems )
+( gerd )
+( ghz )
+( gi )
+( gift )
+( gis )
+( gju )
+( glc )
+( go )
+( gp )
+( gpa )
+( grinding teeth )
+( gsd i )
+( gsl )
+( gu )
+( gv )
+( gy )
+( h = wb / a )
+( h1n1 )
+( happle )
+( hcm )
+( hcmv )
+( hcv )
+( hd )
+( he4 )
+( height , width , length )
+( hepatic vein thrombosis )
+( hereditary motor and sensory neuropathy type v )
+( hereditary sensory autonomic neuropathy )
+( hes )
+( hev )
+( hgsil )
+( hhcc )
+( hhv - 5 )
+( hhv 6 )
+( hhv 7 )
+( hids )
+( hie )
+( hipaa )
+( hit )
+( hiv )
+( hmo )
+( hmsn )
+( hmsn 2 b )
+( hocm )
+( housewife )
+( hplc )
+( hpns )
+( hpv )
+( hrt )
+( hsan )
+( hsp )
+( hsv - 1 )
+( htlv )
+( htlv - 1 + )
+( htlv - 1 positive )
+( htlv - iii )
+( htlv 1 )
+( huntington )
+( hus )
+( hydroxyindoleaceticac )
+( hz )
+( i . q . 35 - 49 )
+( i . q . below 20 )
+( iadl )
+( ibc )
+( ibd )
+( ibs )
+( ic )
+( ic50 )
+( icce )
+( icd )
+( icd - 10 )
+( ich )
+( ics )
+( icsi )
+( icu )
+( ids )
+( iep )
+( ifap )
+( igs )
+( ihss )
+( imri )
+( in labor )
+( incl )
+( independent practice association )
+( individual practice association )
+( inph )
+( inr )
+( ins )
+( iol )
+( ippb )
+( iq )
+( irv )
+( issd )
+( itp )
+( iu / g hb )
+( iv )
+( ivf )
+( ivig )
+( ivp )
+( joint fluid )
+( jpl )
+( juvenile myoclonic epilepsy )
+( k07 )
+( k10 )
+( kat )
+( kcal )
+( kg )
+( kinetic parameter )
+( kinshasa )
+( kj )
+( km )
+( konno procedure )
+( kpa )
+( kv )
+( kw )
+( lada )
+( lan )
+( lasik )
+( lav )
+( lavh )
+( lbs )
+( lcad , vlcad )
+( lchad )
+( lcmv )
+( ld50 )
+( leep )
+( length , width , thickness )
+( let )
+( level 0 + snomed )
+( level 0 + snomed + mdr )
+( lexical )
+( lg )
+( lgl )
+( lmat )
+( lmct )
+( loa )
+( lobectomy )
+( loh )
+( loinc fragment )
+( loinc notation for presence )
+( lpn )
+( lrr )
+( lsc - a )
+( ltp )
+( m )
+( m2 )
+( m3 )
+( mac )
+( machado - joseph )
+( machado joseph )
+( macs )
+( malt )
+( map )
+( maple syrup urine disease )
+( mark )
+( masa )
+( mast )
+( mbc )
+( mc )
+( mcad )
+( mcadd )
+( mcg )
+( mch )
+( mci )
+( mcv )
+( mdr )
+( meddra )
+( medio - lateral oblique )
+( meg )
+( men 2a )
+( men1 )
+( mental age less than 2 years )
+( meq )
+( merrf syndrome )
+( mesh )
+( mg )
+( mg / mmol )
+( mgus )
+( mhc )
+( mhz )
+( mi )
+( miu )
+( mixed type carcinoma )
+( mlc )
+( mm )
+( mmhg )
+( mmol )
+( mmol / l )
+( mmtv )
+( mngie )
+( mol / g )
+( mol / l )
+( mos )
+( moyamoya )
+( mpgn )
+( mph )
+( mpm - a )
+( mpm - e )
+( mr )
+( mra )
+( mrd )
+( mri )
+( mrs )
+( mrsa )
+( ms )
+( msls )
+( mslt )
+( msv )
+( mtc )
+( mtss )
+( mu )
+( multiple acyl - coa dehydrogenase deficiency )
+( multiple sclerosis )
+( mv )
+( mvp )
+( mvt )
+( mvv )
+( mw )
+( n1 )
+( naaccr )
+( nag )
+( naion )
+( napiia )
+( narp syndrome )
+( natives )
+( nbia )
+( ncfs )
+( nci )
+( ncv )
+( ndv )
+( nemsis )
+( neurofibromatosis 1 )
+( neurofibromatosis 2 )
+( neuroleptic malignant syndrome )
+( ng )
+( ngu )
+( nhl )
+( nic )
+( nicu )
+( nippv )
+( nl )
+( nm )
+( nmol / l )
+( nmr )
+( noc )
+( normal pressure hydrocephalus )
+( nph )
+( npv )
+( ns )
+( nsd )
+( nstemi )
+( nvss )
+( ocd )
+( octd )
+( odor )
+( of )
+( oli )
+( ols )
+( op )
+( opi )
+( oppa regimen )
+( orif )
+( os )
+( osteopenia )
+( otc )
+( over 100 years )
+( oz )
+( p2 )
+( p3 )
+( p30 )
+( pac )
+( pacu )
+( paho )
+( palestine )
+( panic )
+( panin )
+( pao )
+( part )
+( pat )
+( pbs )
+( pc02 )
+( pca )
+( pcds )
+( pcn )
+( pcos )
+( pcp )
+( pcr )
+( pct )
+( pcv )
+( pd )
+( pdd )
+( pdr )
+( peep )
+( pei )
+( pej )
+( persistent vegetative state )
+( pes )
+( pet )
+( pfeiffer )
+( pfge )
+( pfic 1 )
+( pfic 2 )
+( pfic1 )
+( pfic2 )
+( pfic3 )
+( pg )
+( ph )
+( ph ir )
+( pha )
+( php )
+( phyrophosphate )
+( physician data query )
+( pi )
+( pid )
+( piedra )
+( pin i )
+( pin ii )
+( pjc )
+( pku )
+( pl )
+( plc )
+( plt )
+( pm )
+( pmol / l )
+( pmr )
+( pms )
+( pnet )
+( pnh )
+( pni )
+( po )
+( po2 )
+( pog )
+( poi )
+( poms )
+( ponv )
+( possession )
+( post-op )
+( pott ' s )
+( pp )
+( ppb )
+( ppc - c )
+( ppc - e )
+( ppfa )
+( ppm )
+( ppo )
+( praecox )
+( prc )
+( prg )
+( prk )
+( prognosis )
+( proximal isovelocity surface area )
+( proximal myotonic myopathy )
+( prp )
+( prrs )
+( psi )
+( psn )
+( psvt )
+( pt )
+( pta )
+( ptca )
+( ptld )
+( ptsd )
+( pump bump )
+( pvc )
+( pvd )
+( pvm )
+( qaly )
+( qct )
+( qsar )
+( qtl )
+( ra )
+( raeb - 1 )
+( raeb - 2 )
+( rars )
+( rast )
+( rbmt )
+( rcmd - rs )
+( rda )
+( rds )
+( rec )
+( reflex sympathetic dystrophy )
+( related person )
+( release )
+( remedy )
+( ret )
+( retinal coloboma and nystagmus )
+( rflp )
+( rhagades )
+( ria )
+( right ventricular systolic pressure )
+( rigid covering )
+( ris )
+( rls )
+( rn )
+( rnai )
+( rp )
+( rpm )
+( rsds )
+( rsv )
+( rti )
+( rv )
+( saas )
+( sad )
+( sads )
+( sars )
+( sc )
+( scad )
+( scal )
+( scr ) ( mpm - a )
+( sdh )
+( sec )
+( sem )
+( semi )
+( sepa )
+( sepp )
+( sga )
+( sgp )
+( short arm )
+( short terminal repeat , nucleic acid )
+( sids )
+( sine )
+( sipt )
+( site - specific colonic cancer )
+( siv )
+( sle )
+( sleepiness )
+( snomed rt + ctv3 )
+( sob )
+( spect )
+( spf )
+( spl )
+( srt )
+( sscp )
+( sspe )
+( sst )
+( stai )
+( star )
+( starr )
+( std )
+( stds )
+( stel )
+( stm )
+( subarachnoid hemorrhage )
+( sunds )
+( sv )
+( svc )
+( svd )
+( svo2 )
+( swallowing air )
+( swimup )
+( t1a )
+( t1p )
+( t2a )
+( t2p )
+( t3a )
+( t3p )
+( tat )
+( tb )
+( tdd )
+( teeth grinding )
+( tem )
+( tens )
+( termination of pregnancy )
+( tfa )
+( tfp )
+( tgv )
+( thompson ' s test )
+( thompson test )
+( thoracentesis fld )
+( thrush )
+( tia )
+( tkr )
+( tlc )
+( tme )
+( tmj )
+( tms )
+( to2 )
+( to3 )
+( tof )
+( tp )
+( tpn )
+( trali )
+( transient global amnesia )
+( transient ischemic attack )
+( traps )
+( traumatic brain injury )
+( tri )
+( truncus arteriosus )
+( tsp )
+( tss )
+( ttd )
+( ttnb )
+( ttp )
+( turp )
+( u . s . legislature )
+( uci )
+( ufo )
+( ug )
+( uicc )
+( uiu )
+( ul )
+( ultrastar )
+( um / l )
+( umls )
+( umol )
+( un )
+( unhcr )
+( urti )
+( uti )
+( v - tach )
+( va c & p )
+( vap )
+( variant - creutzfeldt - jakob disease )
+( variant creutzfeldt jakob disease )
+( vast )
+( vats )
+( vbg )
+( vcg )
+( ve )
+( vel )
+( ventilation )
+( vigs )
+( vin )
+( vin iii )
+( vipoma )
+( visa / gisa )
+( vogt koyanagi harada )
+( voltage )
+( vre )
+( vrsa / grsa )
+( vsd )
+( vt )
+( vulval aphthosis )
+( wais )
+( wax in ear )
+( wbc )
+( wbs )
+( weakness )
+( whi )
+( whipple resection )
+( who )
+( yd )
+- abdominal pressure
+- accident and emergency department
+- accommodation
+- activated clotting time
+- active cycle of breathing technique
+- acute disseminated encephalomyelitis
+- adenocarcinoma in situ
+- air conduction
+- airway resistance
+- allied health professional
+- amalgam cement restoration
+- amaurosis fugax
+- amniocentesis
+- anion gap
+- ankle jerk
+- anogenital human papilloma virus infection
+- antegrade colonic enema procedure
+- anterior ciliary sclerotomy
+- anterior colporrhaphy
+- arterial oxygen content
+- automatic cardiac defibrillator procedure
+- axial length
+- base curve
+- best corrected visual acuity
+- binocular distance visual acuity
+- binocular vision
+- biparietal diameter
+- birth weight
+- blood pressure
+- body mass index
+- body odor problem
+- body surface area
+- body temperature
+- bone conduction
+- brainstem auditory evoked potentials
+- brainstem auditory evoked responses
+- brainstem evoked potentials
+- brainstem evoked responses
+- breast - fed
+- breast - feeding
+- breastfed
+- breastfeeding
+- breath sounds
+- breathing rate
+- brightness acuity testing visual acuity
+- capillary oxygen content
+- carcinoma in situ
+- cardiac output
+- central corneal thickness
+- central european tick - borne encephalitis
+- central line associated bloodstream infection
+- central venous pressure
+- closing volume
+- cochlear microphonic
+- color vision
+- colour vision
+- community hospital
+- confrontation visual field
+- corneal reflex
+- cortical auditory evoked potentials
+- crown rump length
+- dark adaptation
+- dead space
+- dermatomal sep
+- diastolic arterial pressure
+- diastolic blood pressure
+- direct current
+- emotion
+- english regional health authority
+- esophageal pressure
+- eustachian tube function
+- event - related potentials
+- evoked potentials
+- exercise tolerance
+- expiratory reserve volume
+- external optical zone
+- extraocular muscle balance
+- failure to thrive
+- far point of accommodation
+- fluid balance
+- forced expired volume
+- forced vital capacity
+- functional residual capacity
+- genital wart virus infection
+- gastric acid secretion
+- glaucoma hemifield test
+- head circumference
+- health boards of northern ireland
+- heart beat
+- heart rate
+- heart sounds
+- hyperventilation syndrome
+- ideal body weight
+- in vitro fertilisation with intracytoplasmic sperm injection ( icsi )
+- inspiratory capacity
+- inspiratory reserve
+- intelligence quotient
+- intensive care unit
+- intercanthal distance
+- internal optical zone
+- international neuroblastoma staging system stage
+- interpupillary distance
+- intracranial pressure
+- intraocular pressure
+- invasive blood pressure
+- lateral flexion
+- lean body mass
+- left atrial pressure
+- left axis deviation
+- left to right ventricular stroke volume ratio
+- left ventricular stroke work
+- left ventricular stroke work index
+- light touch
+- local anesthetic block of nerve plexus
+- long - term memory
+- loudness discomfort level
+- lung compliance
+- maximum expiratory flow rate
+- maximum mid-expiratory flow rate
+- mean deviation
+- middle latency responses
+- mini-mental state examination
+- minimal erythema dose
+- minimal phototoxic dose
+- mouth pressure
+- myocardial oxygen consumption
+- neuroleptic malignant syndrome
+- no light perception
+- no perception of light
+- nursing home
+- observation of present pain intensity
+- occipitofrontal circumference
+- oesophageal pressure
+- operating room
+- operating theatre
+- optical density
+- optokinetic nystagmus
+- osmotic pressure
+- outpatients department
+- overload response
+- oxygen delivery
+- oxygen saturation
+- packed cell volume
+- paediatric intensive care unit
+- passive movements
+- pediatric intensive care unit
+- peripheral nerve injury
+- phantom limb syndrome
+- phantom limb pain syndrome
+- positive end expiratory pressure setting
+- potential acuity meter visual acuity
+- potential acuity metre visual acuity
+- present illness
+- present , sound and crowned tooth count
+- pulmonary artery diastolic pressure
+- pulmonary artery occlusion pressure
+- pulmonary artery pressure
+- pulmonary to systemic flow ratio
+- pulmonary vascular resistance
+- pulmonary vascular resistance index
+- pulsatility index
+- pulse rate
+- pus cells
+- pv
+- recommended nutrient intake
+- residual respiratory volume
+- respiratory quotient
+- respiratory rate
+- restriction fragment length polymorphism
+- retinal correspondence
+- rhythmic mid-temporal discharge
+- right atrial pressure
+- right ventricular ejection fraction
+- right ventricular end - diastolic pressure
+- right ventricular pressure
+- right ventricular stroke work index
+- right ventricular work
+- selective parenteral and enteral antisepsis regimen
+- somatosensory evoked potential
+- somatosensory evoked potentials
+- special care baby unit
+- standard deviation of phase
+- stapedial reflex threshold
+- stereoscopic vision
+- stroke index
+- stroke volume
+- subclinical rhythmical eeg discharges in adults
+- systemic vascular resistance
+- systemic vascular resistance index
+- systolic arterial pressure
+- total iron binding capacity
+- uncomfortable loudness level
+- usual body weight
+- venous pressure
+- vibration sense
+- vital capacity
+: ( & cin i )
+: [ periorbital oedema ]
+[ & calcinosis ]
+[ & german measles ]
+[ acoustic neurofibromatosis ]
+[ aiphi ]
+[ artefacta ]
+[ berloque dermatitis ]
+[ bilharziasis ]
+[ bmi ]
+[ body louse ]
+[ cancer - causing gene ]
+[ cas ]
+[ chf congo virus ]
+[ cin i ]
+[ cin ii ]
+[ cish ]
+[ dcr ]
+[ e . chafeensis ]
+[ e . coli ]
+[ ecmo ]
+[ ein ]
+[ eng ]
+[ eog ]
+[ erc ]
+[ ercp ]
+[ erg ]
+[ erp ]
+[ eswl ]
+[ h . pylori ]
+[ h = wb / a ]
+[ head louse ]
+[ hiv - 2 ]
+[ htlv - ii ]
+[ iabp ]
+[ ippb ]
+[ isd ]
+[ lash ]
+[ lrvh ]
+[ lsh ]
+[ mcls ]
+[ nci ]
+[ obsessional rituals ]
+[ peg ]
+[ pej ]
+[ phaehyphomycosis ]
+[ pku ]
+[ ptca ]
+[ pubic louse ]
+[ sepsis ]
+[ streptococcus pneumoniae pneumonia ]
+[ streptococcus pneumoniae septicemia ]
+[ tlh ]
+[ tlrh ]
+[ ufr ]
+[ under age group ]
+[ upp ]
+[ vep ]
+[ vin i ]
+[ von recklinghausen ' s disease ]

Added: ctakes/sandbox/dictionary-gui/data/default/UnwantedPrefixes.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/default/UnwantedPrefixes.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/default/UnwantedPrefixes.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/default/UnwantedPrefixes.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,30 @@
+ or
+#
+&
+& [
+'
+( congenital )
+*
+-
+:
+?
+[ d ]
+[ edta ]
+[ m ]
+[ q ]
+[ v ]
+[ x ]
+[ so ]
+activities involving
+and unspecified
+( non-specific )
+child :
+college of american pathologists cancer checklist ;
+engaged in 
+entire 
+other activity involving
+other
+phenx -
+specimen source code -
+specimen source codes -
+specimen source codes =

Added: ctakes/sandbox/dictionary-gui/data/default/UnwantedSuffixes.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/default/UnwantedSuffixes.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/default/UnwantedSuffixes.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/default/UnwantedSuffixes.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,1024 @@
+/
+'
+-
+- ( other )
+- ( religious affiliation )
+- a specialty area of medicine
+- action
+- activity of daily living
+- assess ( & non urg )
+- attribute
+- biologic function
+- category
+- confectionery
+- dietary
+- duplicate -
+- entertainment ( & [ musical ]
+- finding
+- function
+- general -
+- herbal supplement
+- mental defense mechanism
+- mental process
+- nos
+- observation
+- organization
+- physical agent
+- related finding
+- retired
+- retired -
+- rolecode
+- speciality
+- specialty
+- summary
+- symptom
+- unspec
+- unspecified
+- weather
+- sport
+( except leather and fur )
+( namespace concept )
+( process of differentiation )
+) ( adjudicators ( & top )
+ as topic
+ as topics
+ nec
+ nec in snomedct
+ nos
+ not otherwise specified
+ or
+ title 18
+& / or o / e
+& / or orderly ( & [ orderlies ] )
+& [ fistula ]
+& [ symptom ]
+& [ legal ]
+& [ symptom ]
+& [ vehicle ]
+( & [ reimbursement ] )
+( or )
+( & [ abnormal ] )
+( & [ acquired ] )
+( & [ acute ] )
+( & [ acute nos ] )
+( & [ broad ligament ] )
+( & [ bupa examination done ] )
+( & [ c / o - ] )
+( & [ c / o ] )
+( & [ chart ] )
+( & [ duct ] or [ gland ] )
+( & [ eating observation ] )
+( & [ etc ] )
+( & [ expiratory ] )
+( & [ eye disorder ] )
+( & [ government ] )
+( & [ hall ] )
+( & [ infection ] )
+( & [ keen ] )
+( & [ labor complicated by ] )
+( & [ laborer nos ] )
+( & [ labour complicated by ] )
+( & [ labourer nos ] )
+( & [ machine ] and / or [ press ] )
+( & [ member of phct ] )
+( & [ miners ( & coal )
+( & [ named variants ] )
+( & [ nec ] )
+( & [ nos ] )
+( & [ obstructive ] )
+( & [ occupation ] )
+( & [ occupations ] )
+( & [ officer ] )
+( & [ product ] )
+( & [ refer ] )
+( & [ referral ] )
+( & [ referral to ] )
+( & [ reimbursement ] )
+( & [ retail ] )
+( & [ rubber ] )
+( & [ staff ] )
+( & [ staghorn ] )
+( & [ symptom ] )
+( & [ teachers ] )
+( & [ unmarried ] )
+( & [ unspecified ] )
+( & [ warfarin ] )
+( & [ weightlessness ] )
+( & [ well ] )
+( & acquired )
+( & acute )
+( & admin )
+( & administration )
+( & ankle joint )
+( & assess )
+( & attic )
+( & bladder )
+( & blind )
+( & c / o ) 
+( & c / s )
+( & certificate )
+( & chronic )
+( & claim )
+( & claim gp / ms )
+( & congenital )
+( & conjunctiva )
+( & consent )
+( & dialysis )
+( & direct )
+( & disorder )
+( & distal )
+( & drug )
+( & expiratory )
+( & f303 )
+( & floor / wall )
+( & food poison )
+( & form )
+( & form gp45 ) )
+( & form : [ fp70a ] or [ gp / pea ] )
+( & from patient )
+( & held )
+( & hepatic duct )
+( & in blood )
+( & infection )
+( & infestation )
+( & level ( & phenylalanine ) )
+( & level )
+( & localization )
+( & marital )
+( & maternity allowances )
+( & mobile unit x-ray )
+( & named variants )
+( & nec )
+( & non urg )
+( & nos )
+( & o / e )
+( & on medical advice )
+( & operation )
+( & other )
+( & pathology )
+( & patient data )
+( & peritonsillar region )
+( & pleural )
+( & provision )
+( & record )
+( & referred to )
+( & report )
+( & result )
+( & sample )
+( & sc1 - given to staff )
+( & scrotal skin )
+( & short hip rotator )
+( & sinus )
+( & skin )
+( & skin of external ear )
+( & skin of external nose )
+( & skin of eyebrow )
+( & skin of eyelid )
+( & skin of male perineum )
+( & skin of nipple )
+( & skin of penis )
+( & skin of vulva )
+( & stock order gp10a )
+( & swab )
+( & symptom )
+( & tanner )
+( & top )
+( & top managers )
+( & traumatic )
+( & umbilical skin )
+( & unspecified )
+( & upper )
+( & vaccination )
+( & various types )
+( & viral )
+( & with stabilisation )
+( & with stabilization )
+( * )
+( _ _ _ per hpf )
+( + / - religion )
+( = breath )
+( = breath )
+( = stone )
+( = stone )
+( 10 )
+( a priority lower than stat )
+( abnormality )
+( abo blood group )
+( acholeplasma host )
+( acknowledgementcondition )
+( acquired )
+( action )
+( action )
+( activated )
+( activity )
+( activity )
+( actual )
+( adjudicators ( & top )
+( adl finding )
+( administative )
+( administration method )
+( administrative concept )
+( age group )
+( alcohol )
+( all components )
+( all fractions of )
+( allelic variant )
+( alone )
+( alphabetic group )
+( alternative )
+( amount )
+( amphibian )
+( anatomical classification )
+( anatomical coordinate )
+( anatomical descriptor )
+( anatomical feature )
+( anatomical location )
+( anatomy )
+( and accessories )
+( and related agents )
+( angiosperm hosts )
+( animal )
+( any part )
+( apparatus )
+( applies to non-numeric results )
+( area of increased mortality )
+( area of knowledge )
+( arrangement )
+( art )
+( artificial )
+( artistic )
+( ascomycota )
+( assessment )
+( assessment scale )
+( astronomy )
+( at present )
+( attitude )
+( attribute )
+( attributes )
+( audit )
+( australia )
+( available ( qualifier ) )
+( bacteria )
+( bacteria and cyanobacteria hosts )
+( battery - powered )
+( beach )
+( beach , court )
+( beet sugar )
+( behavior )
+( behavior finding )
+( beverage )
+( biologic function )
+( biological )
+( biological function )
+( biological funtion )
+( biopsy result )
+( bird )
+( blacus )
+( blood components )
+( blood pressure )
+( body part )
+( body structure )
+( body substance )
+( botanical taxonomic category below variety )
+( brain )
+( brain structure )
+( button )
+( calcified structure )
+( canal )
+( cancer stage )
+( candy )
+( cardiac conduction )
+( category )
+( catering and lodging services )
+( cell )
+( cell line )
+( cell structure )
+( cells or organisms )
+( central nervous system tumor )
+( central nervous system tumour )
+( cerebellum )
+( certification )
+( change )
+( characteristic )
+( chemical )
+( chemical / related processes )
+( chemical and related processes )
+( chemical processes , except petroleum )
+( citrus )
+( class )
+( classical )
+( classification )
+( cleansing action )
+( clinical )
+( clinical definition )
+( clinical disorder )
+( clinical specialty )
+( color )
+( combined site )
+( comfort level finding )
+( communication )
+( communicationfunctiontype )
+( community )
+( company )
+( compartment )
+( complement activation )
+( complete ) ( partial )
+( component )
+( composite )
+( compression algorithm )
+( computer )
+( computer files directory )
+( computer network )
+( concept )
+( construction )
+( container status )
+( containing tobacco )
+( context - dependent category )
+( contextual qualifier )
+( copy in notes )
+( copy within chart )
+( court )
+( crustacea )
+( crustacean )
+( data - processing )
+( data )
+( data type )
+( dataset )
+( dedicated instruments )
+( degree / certification )
+( degree / license / certification )
+( dental procedure )
+( deprecated )
+( detection and tagging )
+( deviation )
+( device )
+( device status )
+( diagnosis )
+( diagnostic , surgical , and therapeutic interventions )
+( dicotyledons hosts )
+( dietary )
+( digestive structure of animal )
+( diminutive )
+( direction )
+( discharge )
+( discipline )
+( disease )
+( disease attribute )
+( diskus intervertebralis )
+( disorder )
+( do as near as possible to requested time )
+( do immediately )
+( document )
+( document type )
+( documents )
+( dry - cleaner )
+( dysfunction )
+( economic )
+( economic descriptor )
+( economic status )
+( edible )
+( edible oils )
+( education )
+( electric power )
+( electrical )
+( embryology )
+( embryonic structure )
+( emergency )
+( emotion )
+( emotional response )
+( end postition )
+( england & wales )
+( england and wales )
+( entertainment )
+( entire collection )
+( entity )
+( environment )
+( environmental process )
+( epidemiology )
+( equipment )
+( ethnic group )
+( eukaryote )
+( event )
+( event history )
+( except advertising )
+( except aircraft and marine engines )
+( except aircraft and marine turbines )
+( except construction )
+( except electrical )
+( except lawyer or judge )
+( except motor vehicle )
+( except oil and gas wells )
+( except photo - gravers )
+( except rubber )
+( except ships ' engines )
+( except tire maker / tire vulcanizer )
+( except tire makers and tire vulcanisers )
+( except tire makers and tire vulcanizers )
+( except transport )
+( experimental )
+( experimental system )
+( exposure / injury )
+( extensiveness )
+( external anatomical feature )
+( eye )
+( family )
+( family issue )
+( female )
+( field )
+( fiinding )
+( film )
+( films )
+( finding )
+( finding )
+( fish )
+( flies )
+( flower )
+( follower of religion - person )
+( food )
+( for any age )
+( for cleaning purpose )
+( for gunter ' s chain )
+( for pain relief )
+( for staff )
+( for transmitting doses for pharmacokinetics )
+( formal meetings )
+( formation )
+( foundry )
+( freight train )
+( frequency )
+( fruit )
+( function )
+( function )
+( fungi hosts )
+( fungus )
+( garment )
+( gauge size )
+( general )
+( generic version )
+( genetics )
+( genu )
+( geographic )
+( geographic area )
+( geographic location )
+( glandula suprarenalis )
+( goal )
+( grade )
+( gramineae hosts )
+( grooming )
+( grooming )
+( group )
+( group of parts )
+( guideline )
+( gunter ' s chain )
+( hand - operated machine )
+( heading )
+( health )
+( health care )
+( healthcare )
+( helper cells )
+( hemorrhage )
+( high voltage )
+( histology )
+( history )
+( hl7v3 . 0 concept )
+( horizontal architectural support )
+( horse )
+( hosiery )
+( human only )
+( hypothalamus )
+( i . q . . . . . )
+( iadl finding )
+( idea )
+( identifier )
+( image )
+( in-store merchandise )
+( in animal tissues )
+( in vivo )
+( inactive concept )
+( including digits )
+( indicator )
+( infection )
+( injury )
+( input )
+( inquiry )
+( insect )
+( insect hosts )
+( instep )
+( instruction )
+( instruction imperative )
+( intake )
+( interactions )
+( intercourse )
+( invertebrate )
+( island )
+( january 2007 release )
+( kind of quantity )
+( lab finding )
+( lab procedure )
+( lab result )
+( lab technique )
+( lab test )
+( laboratory finding )
+( laboratory procedure )
+( land - based )
+( laparotomy performed )
+( length )
+( lepidoptora hosts )
+( libraries )
+( libraries )
+( life event - finding )
+( life style )
+( line - film )
+( lingual , palatine , pharyngeal )
+( link assertion )
+( linkage concept )
+( liquid )
+( list bullets )
+( list separately in addition to code for primary procedure )
+( living organism )
+( location )
+( logging )
+( long - distance transport )
+( lower case a )
+( machine )
+( machine , except jacquard loom )
+( machines )
+( male )
+( malting )
+( mammal )
+( mapping )
+( marine pseudomonad hosts )
+( masonry and woodwork )
+( material )
+( mating )
+( measurement )
+( medical device )
+( medically )
+( medium of exchange )
+( medulla )
+( medullae )
+( medullary reticular formation )
+( member of religious order )
+( membrane )
+( mental function )
+( mental process )
+( mesh category )
+( metabolim test )
+( metal )
+( metal melting , except cupola )
+( metal reheating )
+( method )
+( military )
+( mine )
+( mine / quarry )
+( mine and quarry )
+( minor structure )
+( miscellaneous )
+( modified )
+( modifier )
+( molecular function )
+( molecular structure )
+( morphologic abnormality )
+( morphologic abnormality , calcified structure )
+( morphology )
+( motion )
+( motion picture )
+( motivation )
+( musical )
+( nanoparticle )
+( natural and artificial )
+( nature of procedure values )
+( navigational concept )
+( neck )
+( nmo )
+( non-ferrous metals )
+( non-specific )
+( non medication )
+( nonoperative )
+( nos )
+( not alarm reaction )
+( not elsewhere classified in lnc )
+( number )
+( numerical qualifier )
+( object )
+( observable )
+( observable entity )
+( observation )
+( observation or disorder )
+( obsolete notation )
+( occasion for eating )
+( occupation )
+( occupation history )
+( occupation or discipline )
+( occupational group )
+( ocular )
+( oil / gas wells )
+( oil and gas wells )
+( oilfield )
+( oils and fats )
+( old people ' s home )
+( operative )
+( or )
+( oral challenge )
+( ore smelting )
+( organ )
+( organ component )
+( organ part )
+( organisation )
+( organism )
+( organization )
+( origin )
+( origins )
+( orthodontic procedure )
+( other )
+( output )
+( package insert )
+( pairs )
+( pairs )
+( palatine )
+( parameter )
+( part organ )
+( patient )
+( patient instructions )
+( pdq )
+( per time )
+( per volume )
+( person )
+( personality )
+( persons )
+( pertaining to a node )
+( petroleum refining )
+( phenomenon )
+( philosophy )
+( physical activity )
+( physical activity )
+( physical device )
+( physical finding )
+( physical force )
+( physical force )
+( physical geography )
+( physical object )
+( physical object )
+( physician )
+( physician group )
+( physiologic )
+( physiologic function )
+( physiology )
+( planet )
+( plant )
+( plant hosts )
+( plant part )
+( plants hosts )
+( platelet )
+( polypectomy )
+( population )
+( population )
+( population group )
+( position )
+( postinfection )
+( postoperative )
+( potency unit )
+( power station )
+( ppc - c )
+( prescription )
+( present illness )
+( present time )
+( press / radio / t . v . )
+( primary )
+( primary procedure )
+( printing )
+( private service )
+( procedure )
+( procedure detail )
+( procedure nec )
+( procedure or disorder )
+( process )
+( process of discrimination )
+( product )
+( profession )
+( property )
+( property of measurement )
+( prosthesis )
+( protons , ions )
+( protozoa )
+( provider role )
+( psychiatric )
+( psychiatry )
+( psychologic )
+( psychological function )
+( psychology )
+( psychophysiology )
+( psychotherapy )
+( publication )
+( publication format )
+( publications )
+( pure mathematics )
+( qualifier )
+( qualifier in lnc )
+( qualifier value )
+( qualifier value )
+( quality )
+( race )
+( racial group )
+( radio / t . v . )
+( radio / television )
+( radio / television / radar equipment )
+( radio broadcasts )
+( radioactive materials )
+( radiologist )
+( rate )
+( reassigned )
+( record )
+( record artifact )
+( recreational activity )
+( reference documentation )
+( regime / therapy )
+( region )
+( region of foot )
+( rehabilitation )
+( reimbursement )
+( relative )
+( religion )
+( religion / philosophy )
+( reptile )
+( respiratory measure )
+( response modality )
+( result )
+( revised )
+( rifle )
+( road )
+( role )
+( rolling mill )
+( route )
+( route of administration )
+( schedule frequency )
+( science )
+( scotland )
+( sea )
+( season )
+( second level )
+( section of report )
+( self - care status )
+( sensation )
+( separate procedure )
+( serotype )
+( serous membrane )
+( services standards )
+( set of actions )
+( severe )
+( severity modifier )
+( shape )
+( shin )
+( ship )
+( singles )
+( site )
+( site of care )
+( situation )
+( sleep disorder )
+( slowed )
+( small pieces )
+( snails )
+( social behavior )
+( social concept )
+( social status )
+( sound )
+( sound intensity )
+( source type )
+( spatial )
+( special concept )
+( specialised )
+( specialized )
+( specialty )
+( specific stage )
+( specify )
+( specify level )
+( specify type )
+( specimen )
+( specimen source code )
+( spice )
+( sport )
+( sports activity )
+( stage / studio )
+( stage and studio )
+( staging scale )
+( statement )
+( statistical )
+( statistical adjustment )
+( statistical procedure )
+( statistical technique )
+( status )
+( steam )
+( steel )
+( steel converting )
+( steel refining )
+( still camera )
+( strain )
+( structure )
+( subdivision )
+( substance )
+( substance / material )
+( substance status )
+( substantia innominata )
+( substitution condition )
+( suffix )
+( sugar refining )
+( suppressor cells )
+( surface )
+( surface region )
+( surface region of back )
+( surgical )
+( surgical procedure )
+( surgical speciality )
+( surgical view )
+( symbol )
+( symptom )
+( system )
+( taxon )
+( technician / technologist )
+( techniques )
+( temporal )
+( temporal concept )
+( temporal qualifier )
+( terminology entity )
+( test result )
+( testicles )
+( theater )
+( theatre )
+( theoretical )
+( therapeutic )
+( therapy )
+( therapy ) ( diagnostic id )
+( third level )
+( time frame )
+( time pattern )
+( time period )
+( time point or interval )
+( tissue )
+( tissue integrity )
+( to be done prior to surgery )
+( traffic )
+( transanal disk excision )
+( transmission )
+( transportation )
+( treatment )
+( trust territory )
+( tumor staging )
+( type )
+( type of material , substance )
+( u . s . )
+( uniformity )
+( unit )
+( unit of mass )
+( unit of measure )
+( unit of pressure )
+( unmodified )
+( upper )
+( us )
+( use calc )
+( use of drug )
+( use only with codes for immunization )
+( used to identify procedures performed on the left side of the body )
+( used to identify procedures performed on the right side of the body )
+( uterine )
+( value )
+( variant )
+( vegetable )
+( version 4 )
+( vertebral column )
+( vertebrale )
+( vocalization )
+( volume )
+( wait and see )
+( wasp )
+( waterworks )
+( weight )
+( wood distillation )
+( workshop )
+( yes / no )
+( zoology )
+,
+, cs
+, device
+, disorder
+, follower of religion
+, function
+, life event
+, nec in snomedct
+, nos
+, not elsewhere classified
+, services & procedure codes ( category iii , temporary )
+, unclassified
+, united states
+, unspecified
+, unspecified part
+:
+: - -
+: - : point in time : ^ patient : - : phenx
+: ( & glucose ( & plasma ) )
+: ( & nos )
+: [ & named variants ]
+: [ admin ] or [ exam ]
+: [ drivers exam ] or [ dtp20003 - hgv / publ serv claim ] or [ admin ]
+: [ early morning ] or [ mid-stream ] or [ for organism ( & culture ) ]
+: [ exam ( & admin ) ] ) or [ my22 form ]
+: [ fp78 ] or [ gp78 ]
+: [ implantation ] or [ implant ]
+: [ monitoring ] or [ clinic ]
+: [ nos ]
+: [ officer ] or [ executive ]
+: [ production ] or [ product ]
+[ any part ]
+[ & aircraft ]
+[ & bacterial ]
+[ & glucose ]
+[ & named variants ]
+[ & nos ]
+[ & professional ]
+[ & symptom ]
+[ a body part ]
+[ action ]
+[ activity ]
+[ adjective ]
+[ ambiguous ]
+[ an instruction material ]
+[ any part ]
+[ artwork ]
+[ ball ]
+[ body ]
+[ body function ]
+[ body part ]
+[ body parts ]
+[ character ]
+[ chemical / ingredient ]
+[ clothing ]
+[ color ]
+[ device ]
+[ disease / finding ]
+[ document ]
+[ dose form ]
+[ dup ]
+[ duplicate ]
+[ economics ]
+[ environment ]
+[ executive duty ]
+[ extent ]
+[ finding ]
+[ fish ]
+[ follower of religion ]
+[ for organism ( & culture ) ]
+[ furniture ]
+[ game ]
+[ garment ]
+[ hiv ]
+[ in an environmental context ]
+[ in social context ]
+[ mammal ]
+[ manufactured object ]
+[ manufactured product ]
+[ mating posture ]
+[ medical device ]
+[ mental function ]
+[ mental process ]
+[ moa ]
+[ molecular function ]
+[ money ]
+[ motion ]
+[ ngu ]
+[ object ]
+[ obsolete ]
+[ occupation ]
+[ organism ] or [ infection - shingles ]
+[ organization ]
+[ other ]
+[ paper report ]
+[ pe ]
+[ people ]
+[ physical phenomenon ]
+[ plan ]
+[ plant ]
+[ procedure ]
+[ product ]
+[ profession ]
+[ psychology ]
+[ publication type ]
+[ race ]
+[ reference materials ]
+[ room ]
+[ sample ]
+[ specialty ]
+[ sports ]
+[ statistical concept ]
+[ status ]
+[ substance ]
+[ surgical action ]
+[ uniformity ]
+[ unit of measurement ]
+[ unit of pressure ]
+] ( person )
+{ organization ]
+< subjective >
+concept ( inactive concept )
+epidemiology
+reason not stated ( inactive concept )
+status ( & consent )
+

Added: ctakes/sandbox/dictionary-gui/data/optional/CtakesAllTuis.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/optional/CtakesAllTuis.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/optional/CtakesAllTuis.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/optional/CtakesAllTuis.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,59 @@
+// ANAT
+T021
+T022
+T023
+T024
+T025
+T026
+T029
+T030
+// DISO
+T019
+T020
+T037
+T047
+T048
+T049
+T050
+T190
+T191
+// FIND
+T033
+T034
+T040
+T041
+T042
+T043
+T044
+T045
+T046
+T056
+T057
+T184
+// PROC
+T059
+T060
+T061
+// DRUG
+T109
+T110
+T114
+T115
+T116
+T118
+T119
+T121
+T122
+T123
+T124
+T125
+T126
+T127
+T129
+T130
+T131
+T195
+T196
+T197
+T200
+T203

Added: ctakes/sandbox/dictionary-gui/data/optional/CtakesAnatTuis.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/optional/CtakesAnatTuis.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/optional/CtakesAnatTuis.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/optional/CtakesAnatTuis.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,8 @@
+T021
+T022
+T023
+T024
+T025
+T026
+T029
+T030

Added: ctakes/sandbox/dictionary-gui/data/optional/CtakesDisoTuis.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/optional/CtakesDisoTuis.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/optional/CtakesDisoTuis.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/optional/CtakesDisoTuis.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,9 @@
+T019
+T020
+T037
+T047
+T048
+T049
+T050
+T190
+T191

Added: ctakes/sandbox/dictionary-gui/data/optional/CtakesFindTuis.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/optional/CtakesFindTuis.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/optional/CtakesFindTuis.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/optional/CtakesFindTuis.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,12 @@
+T033
+T034
+T040
+T041
+T042
+T043
+T044
+T045
+T046
+T056
+T057
+T184

Added: ctakes/sandbox/dictionary-gui/data/optional/CtakesProcTuis.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/optional/CtakesProcTuis.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/optional/CtakesProcTuis.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/optional/CtakesProcTuis.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,3 @@
+T059
+T060
+T061

Added: ctakes/sandbox/dictionary-gui/data/optional/UmlsAllSources.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/optional/UmlsAllSources.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/optional/UmlsAllSources.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/optional/UmlsAllSources.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,63 @@
+AIR
+AOD
+AOT
+CCS
+CHV
+COSTAR
+CSP
+CST
+DXP
+FMA
+GO
+HCPCS
+HL7V2.5
+HL7V3.0
+HUGO
+ICD10PCS
+ICD9CM
+ICPC
+ICPCBAQ
+ICPCDAN
+ICPCDUT
+ICPCFIN
+ICPCFRE
+ICPCGER
+ICPCHEB
+ICPCHUN
+ICPCITA
+ICPCNOR
+ICPCPOR
+ICPCSPA
+ICPCSWE
+LCH
+LNC
+MCM
+MEDLINEPLUS
+MSH
+MTH
+MTHCH
+MTHFDA
+MTHHH
+MTHHL7V2.5
+MTHICD9
+MTHMST
+MTHMSTFRE
+MTHMSTITA
+MTHSPL
+NCBI
+NCI
+NDFRT
+OMIM
+PDQ
+QMR
+RAM
+RXNORM
+SCTSPA
+SNOMEDCT
+SNOMEDCT_US
+SPN
+SRC
+TKMT
+USPMG
+UWDA
+VANDF

Added: ctakes/sandbox/dictionary-gui/data/optional/UmlsAllTuis.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/optional/UmlsAllTuis.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/optional/UmlsAllTuis.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/optional/UmlsAllTuis.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,148 @@
+// ACTI Activities & Behaviors
+T051
+T052
+T053
+T054
+T055
+T056
+T057
+T064
+T066
+// ANAT Anatomy
+T017
+T018
+T021
+T022
+T023
+T024
+T025
+T026
+T029
+T030
+T031
+// CHEM Chemicals & Drugs
+T103
+T104
+T109
+T110
+T111
+T114
+T115
+T116
+T118
+T119
+T120
+T121
+T122
+T123
+T124
+T125
+T126
+T127
+T129
+T130
+T131
+T192
+T195
+T196
+T197
+T200
+// CONC Concepts & Ideas
+T102
+T169
+T170
+T171
+T077
+T078
+T079
+T080
+T081
+T082
+T089
+T185
+// DEVI Devices
+T074
+T075
+T203
+// DISO Disorders
+T019
+T020
+T033
+T037
+T046
+T047
+T048
+T049
+T050
+T184
+T190
+T191
+// GENE Genes & Molecular Sequences
+T028
+T085
+T086
+T087
+T088
+// GEOG Geographic Areas
+T083
+// LIVB Living Beings
+T001
+T002
+T004
+T005
+T007
+T008
+T010
+T011
+T012
+T013
+T014
+T015
+T016
+T096
+T097
+T098
+T099
+T100
+T101
+T194
+T204
+// OBJC Objects
+T167
+T168
+T071
+T072
+T073
+// OCCU Occupations
+T090
+T091
+// ORGA Organizations
+T092
+T093
+T094
+T095
+// PHEN Phenomena
+T034
+T038
+T067
+T068
+T069
+T070
+// PHYS Physiology
+T032
+T039
+T040
+T041
+T042
+T043
+T044
+T045
+T201
+// PROC Procedures
+T058
+T059
+T060
+T061
+T062
+T063
+T065

Added: ctakes/sandbox/dictionary-gui/data/small/ConversionSources.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/small/ConversionSources.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/small/ConversionSources.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/small/ConversionSources.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,4 @@
+// ICD10PCS
+// ICD9CM
+RXNORM
+SNOMEDCT

Added: ctakes/sandbox/dictionary-gui/data/small/CtakesDrugTuis.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/small/CtakesDrugTuis.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/small/CtakesDrugTuis.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/small/CtakesDrugTuis.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,22 @@
+T109
+T110
+T114
+T115
+T116
+T118
+T119
+T121
+T122
+T123
+T124
+T125
+T126
+T127
+T129
+T130
+T131
+T195
+T196
+T197
+T200
+T203

Added: ctakes/sandbox/dictionary-gui/data/small/CtakesSnomedTuis.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/small/CtakesSnomedTuis.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/small/CtakesSnomedTuis.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/small/CtakesSnomedTuis.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,36 @@
+// ANAT
+T021
+T022
+T023
+T024
+T025
+T026
+T029
+T030
+// DISO
+T019
+T020
+T037
+T047
+T048
+T049
+T050
+T190
+T191
+// FIND
+T033
+T034
+T040
+T041
+T042
+T043
+T044
+T045
+T046
+T056
+T057
+T184
+// PROC
+T059
+T060
+T061

Added: ctakes/sandbox/dictionary-gui/data/small/CtakesSources.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/small/CtakesSources.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/small/CtakesSources.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/small/CtakesSources.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1 @@
+SNOMEDCT

Added: ctakes/sandbox/dictionary-gui/data/small/ModifierSuffixes.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/small/ModifierSuffixes.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/small/ModifierSuffixes.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/small/ModifierSuffixes.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1 @@
+// Don't automatically modify for small

Added: ctakes/sandbox/dictionary-gui/data/small/RemovalColonTriggers.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/small/RemovalColonTriggers.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/small/RemovalColonTriggers.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/small/RemovalColonTriggers.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,38 @@
+: - :
+: 24 hours :
+: 8 hours :
+: address :
+: arbitrary concentration :
+: duration of encounter :
+: duration of the study :
+: finding :
+: identifier :
+: impression / interpretation of study :
+: life of the unit :
+: mass :
+: number :
+: point in time :
+: prid :
+: pt :
+: substance concentration :
+: text :
+: type :
+: volume :
+: volume rate :
+// The following are in UnwantedSuffixes for default, but trigger removal for small
+:
+: - -
+: - : point in time : ^ patient : - : phenx
+: ( & glucose ( & plasma ) )
+: ( & nos )
+: [ & named variants ]
+: [ admin ] or [ exam ]
+: [ drivers exam ] or [ dtp20003 - hgv / publ serv claim ] or [ admin ]
+: [ early morning ] or [ mid-stream ] or [ for organism ( & culture ) ]
+: [ exam ( & admin ) ] ) or [ my22 form ]
+: [ fp78 ] or [ gp78 ]
+: [ implantation ] or [ implant ]
+: [ monitoring ] or [ clinic ]
+: [ nos ]
+: [ officer ] or [ executive ]
+: [ production ] or [ product ]

Added: ctakes/sandbox/dictionary-gui/data/small/RemovalPrefixTriggers.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/small/RemovalPrefixTriggers.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/small/RemovalPrefixTriggers.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/small/RemovalPrefixTriggers.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,32 @@
+deprecated 
+retired procedure
+// The following are in UnwantedPrefixes for the default, but here for small
+[ d ]
+[ edta ]
+[ m ]
+[ q ]
+[ v ]
+[ x ]
+[ so ]
+activities involving
+and unspecified
+( non-specific )
+child :
+college of american pathologists cancer checklist ;
+other activity involving
+other
+phenx -
+specimen source code -
+specimen source codes -
+specimen source codes =
+ or
+#
+&
+& [
+'
+*
+-
+:
+?
+
+

Added: ctakes/sandbox/dictionary-gui/data/small/RemovalSuffixTriggers.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/small/RemovalSuffixTriggers.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/small/RemovalSuffixTriggers.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/small/RemovalSuffixTriggers.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,240 @@
+- retired code
+- retired -
+- retired
+( reassigned )
+[ obsolete ]
+( deprecated )
+// The following are in UnwantedSuffixes for default, but trigger removal for small
+- ( other )
+- duplicate -
+- nos
+- retired
+- retired -
+- unspec
+- unspecified
+ as topic
+ as topics
+ nec
+ nec in snomedct
+ nos
+ not otherwise specified
+ or
+ title 18
+( or )
+( 10 )
+( _ _ _ 0 , 2 )
+( deprecated )
+( except leather and fur )
+( hl7v3 . 0 concept )
+( inactive concept )
+( mesh category )
+( namespace concept )
+( non-specific )
+( nos )
+( not elsewhere classified in lnc )
+( obsolete notation )
+( procedure nec )
+( process of differentiation )
+) ( adjudicators ( & top )
+& / or o / e
+& / or orderly ( & [ orderlies ] )
+& [ fistula ]
+& [ symptom ]
+& [ legal ]
+& [ symptom ]
+& [ vehicle ]
+( & [ reimbursement ] )
+( & [ abnormal ] )
+( & [ acquired ] )
+( & [ acute ] )
+( & [ acute nos ] )
+( & [ broad ligament ] )
+( & [ bupa examination done ] )
+( & [ c / o - ] )
+( & [ c / o ] )
+( & [ chart ] )
+( & [ duct ] or [ gland ] )
+( & [ eating observation ] )
+( & [ etc ] )
+( & [ expiratory ] )
+( & [ eye disorder ] )
+( & [ government ] )
+( & [ hall ] )
+( & [ infection ] )
+( & [ keen ] )
+( & [ labor complicated by ] )
+( & [ laborer nos ] )
+( & [ labour complicated by ] )
+( & [ labourer nos ] )
+( & [ machine ] and / or [ press ] )
+( & [ member of phct ] )
+( & [ miners ( & coal )
+( & [ named variants ] )
+( & [ nec ] )
+( & [ nos ] )
+( & [ obstructive ] )
+( & [ occupation ] )
+( & [ occupations ] )
+( & [ officer ] )
+( & [ product ] )
+( & [ refer ] )
+( & [ referral ] )
+( & [ referral to ] )
+( & [ reimbursement ] )
+( & [ retail ] )
+( & [ rubber ] )
+( & [ staff ] )
+( & [ staghorn ] )
+( & [ symptom ] )
+( & [ teachers ] )
+( & [ unmarried ] )
+( & [ unspecified ] )
+( & [ warfarin ] )
+( & [ weightlessness ] )
+( & [ well ] )
+( & acquired )
+( & acute )
+( & admin )
+( & administration )
+( & ankle joint )
+( & assess )
+( & attic )
+( & bladder )
+( & blind )
+( & c / o )
+( & c / s )
+( & certificate )
+( & chronic )
+( & claim )
+( & claim gp / ms )
+( & congenital )
+( & conjunctiva )
+( & consent )
+( & dialysis )
+( & direct )
+( & disorder )
+( & distal )
+( & drug )
+( & expiratory )
+( & f303 )
+( & floor / wall )
+( & food poison )
+( & form )
+( & form gp45 ) )
+( & form : [ fp70a ] or [ gp / pea ] )
+( & from patient )
+( & held )
+( & hepatic duct )
+( & in blood )
+( & infection )
+( & infestation )
+( & level ( & phenylalanine ) )
+( & level )
+( & localization )
+( & marital )
+( & maternity allowances )
+( & mobile unit x-ray )
+( & named variants )
+( & nec )
+( & non urg )
+( & nos )
+( & o / e )
+( & on medical advice )
+( & operation )
+( & other )
+( & pathology )
+( & patient data )
+( & peritonsillar region )
+( & pleural )
+( & provision )
+( & record )
+( & referred to )
+( & report )
+( & result )
+( & sample )
+( & sc1 - given to staff )
+( & scrotal skin )
+( & short hip rotator )
+( & sinus )
+( & skin )
+( & skin of external ear )
+( & skin of external nose )
+( & skin of eyebrow )
+( & skin of eyelid )
+( & skin of male perineum )
+( & skin of nipple )
+( & skin of penis )
+( & skin of vulva )
+( & stock order gp10a )
+( & swab )
+( & symptom )
+( & tanner )
+( & top )
+( & top managers )
+( & traumatic )
+( & umbilical skin )
+( & unspecified )
+( & upper )
+( & vaccination )
+( & various types )
+( & viral )
+( & with stabilisation )
+( & with stabilization )
+( * )
+( _ _ _ per hpf )
+( + / - religion )
+( = breath )
+( = breath )
+( = stone )
+( = stone )
+[ & aircraft ]
+[ & bacterial ]
+[ & glucose ]
+[ & named variants ]
+[ & nos ]
+[ & professional ]
+[ & symptom ]
+[ ambiguous ]
+[ dup ]
+[ duplicate ]
+[ obsolete ]
+[ other ]
+, nec in snomedct
+, nos
+, not elsewhere classified
+, unclassified
+, unspecified
+, unspecified part
+concept ( inactive concept )
+reason not stated ( inactive concept )
+// New for tiny
+&
+: phenx
+// Added for form cleanup 11/3/2014 spf
+( # _ _ _ )
+( / _ _ _ )
+( _ _ _ / )
+( j _ _ _ )
+( _ _ _ 0 , 2 )
+( _ _ _ 0 - 30 )
+( _ _ _ bpm )
+( _ _ _ cm )
+( _ _ _ _ cm )
+( _ _ _ _ _ cm )
+( _ _ _ cm2 )
+( _ _ _ degrees )
+( _ _ _ m2 )
+( _ _ _ mets )
+( _ _ _ min )
+( _ _ _ minutes each time )
+( _ _ _ per hpf )
+( minus _ _ _ )
+( _ _ _ ml / hr )
+( _ _ _ ml per second )
+( plus _ _ _ )
+( _ _ _ sec )
+: plus _ _ _
+_ _ _ %
+_ _ _ cm
+add _ _ _
+

Added: ctakes/sandbox/dictionary-gui/data/small/RightAbbreviations.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/small/RightAbbreviations.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/small/RightAbbreviations.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/small/RightAbbreviations.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1 @@
+// No automatic abbreviation extraction for small
\ No newline at end of file

Added: ctakes/sandbox/dictionary-gui/data/small/UnwantedPrefixes.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/dictionary-gui/data/small/UnwantedPrefixes.txt?rev=1719760&view=auto
==============================================================================
--- ctakes/sandbox/dictionary-gui/data/small/UnwantedPrefixes.txt (added)
+++ ctakes/sandbox/dictionary-gui/data/small/UnwantedPrefixes.txt Sun Dec 13 04:27:42 2015
@@ -0,0 +1,3 @@
+( congenital )
+engaged in
+entire 



Mime
View raw message