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From dlig...@apache.org
Subject svn commit: r1689902 - in /ctakes/sandbox/ctakes-wsd/target: ./ classes/ classes/org/ classes/org/apache/ classes/org/apache/ctakes/ classes/org/apache/ctakes/sample/ classes/org/apache/ctakes/sample/pipeline/ dependency-maven-plugin-markers/ test-clas...
Date Wed, 08 Jul 2015 15:33:47 GMT
Author: dligach
Date: Wed Jul  8 15:33:24 2015
New Revision: 1689902

URL: http://svn.apache.org/r1689902
Log:
adding target directory to svn

Added:
    ctakes/sandbox/ctakes-wsd/target/
    ctakes/sandbox/ctakes-wsd/target/classes/
    ctakes/sandbox/ctakes-wsd/target/classes/org/
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Analyze$PrintConceptSemanticTypes.class
  (with props)
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Analyze$PrintCuis.class
  (with props)
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Analyze.class
  (with props)
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Basic$CopyNPChunksToLookupWindowAnnotations.class
  (with props)
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Basic$UriToDocumentTextAnnotatorCtakes.class
  (with props)
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Basic$XMIWriter.class
  (with props)
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Basic.class
  (with props)
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Experiment.class
  (with props)
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Preprocess$CopyNPChunksToLookupWindowAnnotations.class
  (with props)
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Preprocess$SegmentsFromBracketedSectionTagsAnnotator.class
  (with props)
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Preprocess$XMIWriter.class
  (with props)
    ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Preprocess.class
  (with props)
    ctakes/sandbox/ctakes-wsd/target/dependency-maven-plugin-markers/
    ctakes/sandbox/ctakes-wsd/target/dependency-maven-plugin-markers/net.sourceforge.ctakesresources-ctakes-resources-umls2011ab-jar-3.1.1.marker
    ctakes/sandbox/ctakes-wsd/target/test-classes/
    ctakes/sandbox/ctakes-wsd/target/unpacked/
    ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/
    ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/MANIFEST.MF
    ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/
    ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/net.sourceforge.ctakesresources/
    ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/net.sourceforge.ctakesresources/ctakes-resources-umls2011ab/
    ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/net.sourceforge.ctakesresources/ctakes-resources-umls2011ab/pom.properties
    ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/net.sourceforge.ctakesresources/ctakes-resources-umls2011ab/pom.xml
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3.fdt
  (with props)
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3.fdx
  (with props)
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3.fnm
  (with props)
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3.si
  (with props)
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3_Lucene40_0.frq
  (with props)
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3_Lucene40_0.prx
  (with props)
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3_Lucene40_0.tim
  (with props)
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3_Lucene40_0.tip
  (with props)
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/segments.gen
  (with props)
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/segments_3
  (with props)
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/umls.backup
  (with props)
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/umls.data
  (with props)
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/umls.properties
    ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/umls.script

Added: ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Analyze$PrintConceptSemanticTypes.class
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Analyze%24PrintConceptSemanticTypes.class?rev=1689902&view=auto
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Added: ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Analyze$PrintCuis.class
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Analyze%24PrintCuis.class?rev=1689902&view=auto
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Added: ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Analyze.class
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Analyze.class?rev=1689902&view=auto
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Added: ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Basic$CopyNPChunksToLookupWindowAnnotations.class
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Basic%24CopyNPChunksToLookupWindowAnnotations.class?rev=1689902&view=auto
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Added: ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Basic$UriToDocumentTextAnnotatorCtakes.class
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Basic%24UriToDocumentTextAnnotatorCtakes.class?rev=1689902&view=auto
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Added: ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Basic$XMIWriter.class
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Basic%24XMIWriter.class?rev=1689902&view=auto
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Added: ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Basic.class
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Basic.class?rev=1689902&view=auto
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Added: ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Experiment.class
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Experiment.class?rev=1689902&view=auto
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Added: ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Preprocess$CopyNPChunksToLookupWindowAnnotations.class
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Preprocess%24CopyNPChunksToLookupWindowAnnotations.class?rev=1689902&view=auto
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Added: ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Preprocess$SegmentsFromBracketedSectionTagsAnnotator.class
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Preprocess%24SegmentsFromBracketedSectionTagsAnnotator.class?rev=1689902&view=auto
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Added: ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Preprocess$XMIWriter.class
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Preprocess%24XMIWriter.class?rev=1689902&view=auto
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Added: ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Preprocess.class
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/classes/org/apache/ctakes/sample/pipeline/Preprocess.class?rev=1689902&view=auto
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Added: ctakes/sandbox/ctakes-wsd/target/dependency-maven-plugin-markers/net.sourceforge.ctakesresources-ctakes-resources-umls2011ab-jar-3.1.1.marker
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/dependency-maven-plugin-markers/net.sourceforge.ctakesresources-ctakes-resources-umls2011ab-jar-3.1.1.marker?rev=1689902&view=auto
==============================================================================
    (empty)

Added: ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/MANIFEST.MF
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/MANIFEST.MF?rev=1689902&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/MANIFEST.MF (added)
+++ ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/MANIFEST.MF Wed Jul  8 15:33:24 2015
@@ -0,0 +1,6 @@
+Manifest-Version: 1.0
+Archiver-Version: Plexus Archiver
+Created-By: Apache Maven
+Built-By: ch150124
+Build-Jdk: 1.6.0_45
+

Added: ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/net.sourceforge.ctakesresources/ctakes-resources-umls2011ab/pom.properties
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/net.sourceforge.ctakesresources/ctakes-resources-umls2011ab/pom.properties?rev=1689902&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/net.sourceforge.ctakesresources/ctakes-resources-umls2011ab/pom.properties
(added)
+++ ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/net.sourceforge.ctakesresources/ctakes-resources-umls2011ab/pom.properties
Wed Jul  8 15:33:24 2015
@@ -0,0 +1,5 @@
+#Generated by Maven
+#Mon Aug 12 18:23:38 EDT 2013
+version=3.1.1
+groupId=net.sourceforge.ctakesresources
+artifactId=ctakes-resources-umls2011ab

Added: ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/net.sourceforge.ctakesresources/ctakes-resources-umls2011ab/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/net.sourceforge.ctakesresources/ctakes-resources-umls2011ab/pom.xml?rev=1689902&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/net.sourceforge.ctakesresources/ctakes-resources-umls2011ab/pom.xml
(added)
+++ ctakes/sandbox/ctakes-wsd/target/unpacked/META-INF/maven/net.sourceforge.ctakesresources/ctakes-resources-umls2011ab/pom.xml
Wed Jul  8 15:33:24 2015
@@ -0,0 +1,11 @@
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<artifactId>ctakes-resources-umls2011ab</artifactId>
+	<name>ctakes-resources-umls2011ab</name>
+	<description>ctakes-dictionary-umls2011ab</description>	
+	<parent>
+		<groupId>net.sourceforge.ctakesresources</groupId>
+		<artifactId>ctakes-resources</artifactId>
+		<version>3.1.1</version>
+	</parent>
+</project>
\ No newline at end of file

Added: ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3.fdt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3.fdt?rev=1689902&view=auto
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URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3.fdx?rev=1689902&view=auto
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URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3.fnm?rev=1689902&view=auto
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URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3.si?rev=1689902&view=auto
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URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3_Lucene40_0.frq?rev=1689902&view=auto
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URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3_Lucene40_0.prx?rev=1689902&view=auto
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URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3_Lucene40_0.tim?rev=1689902&view=auto
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URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/_3_Lucene40_0.tip?rev=1689902&view=auto
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URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/segments.gen?rev=1689902&view=auto
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URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/rxnorm_index/segments_3?rev=1689902&view=auto
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URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/umls.data?rev=1689902&view=auto
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URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/umls.properties?rev=1689902&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/umls.properties
(added)
+++ ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/umls.properties
Wed Jul  8 15:33:24 2015
@@ -0,0 +1,38 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+#HSQL Database Engine 1.8.0.10
+#Mon Mar 12 11:25:25 EDT 2012
+hsqldb.script_format=0
+runtime.gc_interval=0
+sql.enforce_strict_size=false
+hsqldb.cache_size_scale=8
+#hsqldb.cache_rows=5000
+#hsqldb.cache_size=10000
+readonly=true
+hsqldb.nio_data_file=true
+hsqldb.cache_scale=14
+version=1.8.0
+hsqldb.default_table_type=memory
+hsqldb.cache_file_scale=1
+hsqldb.log_size=200
+modified=no
+hsqldb.cache_version=1.7.0
+hsqldb.original_version=1.8.0
+hsqldb.compatible_version=1.8.0

Added: ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/umls.script
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/umls.script?rev=1689902&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/umls.script
(added)
+++ ctakes/sandbox/ctakes-wsd/target/unpacked/org/apache/ctakes/dictionary/lookup/umls2011ab/umls.script
Wed Jul  8 15:33:24 2015
@@ -0,0 +1,10 @@
+CREATE SCHEMA PUBLIC AUTHORIZATION DBA
+CREATE CACHED TABLE UMLS_SNOMED_MAP(CUI VARCHAR_IGNORECASE(8) NOT NULL,CODE VARCHAR_IGNORECASE(45)
NOT NULL)
+CREATE INDEX IDX_UMLS_SNOMED_MAP_CUI ON UMLS_SNOMED_MAP(CUI)
+CREATE CACHED TABLE UMLS_MS_2011AB(CUI VARCHAR_IGNORECASE(8) NOT NULL,FWORD VARCHAR_IGNORECASE(80)
NOT NULL,TEXT VARCHAR_IGNORECASE(2048),CODE VARCHAR_IGNORECASE(45) NOT NULL,SOURCETYPE VARCHAR_IGNORECASE(45)
NOT NULL,TUI VARCHAR_IGNORECASE(4) NOT NULL)
+CREATE INDEX IDX_UMLS_SNOMED_MS_2010AA ON UMLS_MS_2011AB(FWORD)
+SET TABLE UMLS_SNOMED_MAP INDEX'16777184 16777184 0'
+SET TABLE UMLS_MS_2011AB INDEX'164772520 26829120 0'
+CREATE USER SA PASSWORD ""
+GRANT DBA TO SA
+SET WRITE_DELAY 10



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