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From miche...@apache.org
Subject svn commit: r1664914 - /ctakes/site/trunk/content/usedby.mdtext
Date Sat, 07 Mar 2015 20:21:24 GMT
Author: michelle
Date: Sat Mar  7 20:21:24 2015
New Revision: 1664914

URL: http://svn.apache.org/r1664914
Log:
modified to get rid of the precoded formatting

Modified:
    ctakes/site/trunk/content/usedby.mdtext

Modified: ctakes/site/trunk/content/usedby.mdtext
URL: http://svn.apache.org/viewvc/ctakes/site/trunk/content/usedby.mdtext?rev=1664914&r1=1664913&r2=1664914&view=diff
==============================================================================
--- ctakes/site/trunk/content/usedby.mdtext (original)
+++ ctakes/site/trunk/content/usedby.mdtext Sat Mar  7 20:21:24 2015
@@ -4,11 +4,7 @@
    </div>
 
    <div class="row">
-      <h2>Academic</h2>
-
-      <p class="lead">
-         Hospitals and Academic Institutions
-      </p>
+      <h2>Hospitals and Academic Institutions</h2>
 
       <p>Boston Children's Hospital</p>
 
@@ -16,6 +12,8 @@
 
       <p>Mayo Clinic</p>
 
+      <p>Massachusetts Institute of Technology</p>
+
       <p>University of Colorado Boulder</p>
 
       <p>University of Pittsburgh</p>
@@ -30,61 +28,36 @@
 
    <div class="row">
       <h2>Companies</h2>
-
       <p><a href="http://wwww.wiredinformatics.com">Wired Informatics</a></p>
    </div>
 
    <div class="row">
       <h2>Publications</h2>
-
       <h3> If you wish to cite cTAKES in a publication, please use: </h3>
-
          <p> Savova, Guergana; Masanz, James; Ogren, Philip; Zheng, Jiaping; Sohn,
Sunghwan; Kipper-Schuler, Karin and Chute, Christopher. 2010. Mayo Clinic Clinical Text Analysis
and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.
JAMIA 2010;17:507-513 doi:10.1136/jamia.2009.001560 </p>
-
       <h3> Other cTAKES publications describing different components and applications:
</h3>
-
          <p> Chen Lin, Helena Canhao, Timothy Miller, Dmitriy Dligach, Robert M. Plenge,
Elizabeth W. Karlson, Guergana Savova. 2012. Feature Engineering and Selection for Rheumatoid
Arthritis Disease Activity Classification Using Electronic Medical Records. International
Conference of Machine Learning (ICML) Workshop on Machine Learning for Clinical Data. </p>
-
          <p> Chen Lin, Timothy Miller, Dmitriy Dligach, Robert M. Plenge, Elizabeth
W. Karlson, Guergana Savova. 2012. Maximal Information Coefficient for Feature Selection for
Clinical Document Classification. International Conference on Machine Learning Workshop on
Machine Learning for Clinical Data. </p>
-
          <p> Miller, Timothy; Dligach, Dmitriy; Savova, Guergana. 2012. Active learning
for Coreference Resolution in the Biomedical Domain. BioNLP workshop at the Conference of
the North American Association of Computational Linguistics (NAACL 2012). </p>
-
          <p> Ashwin N. Ananthakrishnan, Tianxi Cai, Su-Chun Cheng, Pei Jun Chen, Guergana
Savova, Raul Guzman Perez, Vivian S. Gainer, Shawn N. Murphy, Peter Szolovits, Katherine Liao,
Elizabeth W. Karlson, Susanne Churchill, Isaac Kohane, Robert M. Plenge. 2012. Improving Case
Definition of Crohn's Disease and Ulcerative Colitis in Electronic Medical Records using Natural
Language Processing - A Novel Informatics Approach. Digestive Disease Week (DDW). </p>
-
          <p> Zheng, Jiaping; Chapman, Wendy; Miller, Timothy; Lin, Chen; Crowley, Rebecca;
Savova, Guergana. 2012. A system for coreference resolution for the clinical narrative. Journal
of the American Medical Informatics Association. </p>
-
          <p> Savova, Guergana; Olson, Janet; Murphy, Sean; Cafourek, Victoria; Couch,
Fergus; Goetz, Matthew; Ingle, James; Suman, Vera; Chute, Christopher and Weinshilboum, Richard.
2011. The electronic medical record and drug response research: automated discovery of drug
treatment patterns for endocrine therapy of breast cancer. Journal of American Medical Informatics
Association. </p>
-
          <p> Sohn, Sunghwan; Kocher, Jean-Pierre; Chute, Christopher; Savova, Guergana.
2011. Drug side effect extraction from clinical narratives of psychiatry and psychology patients.
Journal of American Medical Informatics Association. </p>
-
          <p> Wu, Stephen; Kaggal, Vinod; Savova, Guergana; Liu, Hongfang; Dligach,
Dmitriy; Zheng, Jiaping; Chapman, Wendy; Chute, Christopher. 2011. Generality and reuse in
a common type system for clinical natural language processing. Managing Interoperability and
Complexity in Health Systems (MIXHS 2011), In conjuction with the 20th ACM International conference
on information and knowledge management. October 28, 2011. Glasgow, UK. </p>
-
          <p> Chute, Christopher; Pathak, Jyoti; Savova, Guergana; Bailey Kent; Schor
Marshall; Hart, Lacey; Beebe, Calvin and Huff, Stan. 2011. The SHARPn project on secondary
use of electronic medical record data: progress, plans an possibilities. AMIA ann symp. </p>
-
          <p> Cairns, Brian ; Nielsen, Rodney; Masanz, James; Martin, James; Palmer,
Martha; Ward, Wayne; Savova, Guergana. 2011. The MiPACQ Clinical Question Answering System.
AMIA Annual Symposium. Washington, DC. </p>
-
          <p> Wilke, Russell; Xu, Hua; Denny, Joshua; Roden, Daniel; Krauss, Ronald
M; McCarty, Catherine A; Davis, R; Skaar, Todd; Lamba Jatinder and Savova, Guergana. 2011.
The emerging role of electronic medical records in pharamacogenomics. Journal of Clinical
Pharmacology and Therapeutics. </p>
-
          <p> Nielsen, Rodney; Masanz, James; Ogren, Philip; Ward, Wayne; Martin, James;
Palmer, Martha; Savova, Guergana. 2010. An architecture for complex clinical question answering.
1st Annual ACM International Conference on Health Informatics (IHI 2010). Washington, DC.
</p>
-
          <p> Kullo, Iftikar; Fan, Jin; Pathak, Jyotishman; Savova, Guergana; Ali, Zeenat;
Chute, Christopher. 2010. Leveraging informatics for genetic studies: use of the electronic
medical record to enable a genome-wide association study of peripheral arterial disease. JAMIA.
DOI:10.1136/jamia.2010.004366. </p>
-
          <p> Sohn, Sunghwan; Murphy, Sean; Masanz, James; Kocher, Jean-Pierre; Savova,
Guergana. 2010. Classification of medication status change in clinical narratives. AMIA Fall
symposium. </p>
-
          <p> Savova, Guergana; Fan, Jin; Ye, Zi; Murphy, Sean; Zheng, Jiaping; Chute,
Christopher and Kullo, Iftikhar. 2010. Discovering peripheral arterial disease cases from
radiology notes using natural language processing. AMIA Fall symposium. </p>
-
          <p> Savova, Guergana; Masanz, James; Ogren, Philip; Zheng, Jiaping; Sohn,
Sunghwan; Kipper-Schuler, Karin and Chute, Christopher. 2010. Mayo Clinical Text Analysis
and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.
JAMIA 2010;17:507-513 doi:10.1136/jamia.2009.001560 </p>
-
          <p> Cheng, Lionel; Zheng, Jiaping; Savova, Guergana and Erickson, Bradley.
2010. Discerning tumor status from unstructured MRI reports – completeness of information
in existing reports and utility of natural language processing. Journal of Digital Imaging
of the Society of Imaging Informatics in Medicine, ISSN: 0897-1889: 23(2), 119-133. PMID:
19484309. (Best paper 2010 award of the Journal of Digital Imaging). http://www.ncbi.nlm.nih.gov/pubmed/19484309
</p>
-
          <p> Sohn, Sunghwan and Savova, Guergana. 2009. Mayo Clinic smoking status
classification system. Proc. AMIA, Nov. 2009. </p>
-
          <p> Garla, V. et al. The Yale cTAKES extensions for document classification:
architecture and application. Journal of the American Medical Informatics Association (2011).
doi:10.1136/amiajnl-2011-000093 </p>
-
          <p> Garla, V and Brandt, C. Ontology-Guided Feature Engineering for Clinical
Text Classification (2012) http://dx.doi.org/10.1016/j.jbi.2012.04.010. </p>
    </div>
 
-
    <div class="row">
       <div class="col-md-5 col-sm-5 col-padded-top col-center">
 



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