Return-Path: X-Original-To: apmail-ctakes-commits-archive@www.apache.org Delivered-To: apmail-ctakes-commits-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id DEE7F17DE2 for ; Wed, 5 Nov 2014 16:46:48 +0000 (UTC) Received: (qmail 94704 invoked by uid 500); 5 Nov 2014 16:46:48 -0000 Delivered-To: apmail-ctakes-commits-archive@ctakes.apache.org Received: (qmail 94665 invoked by uid 500); 5 Nov 2014 16:46:48 -0000 Mailing-List: contact commits-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: dev@ctakes.apache.org Delivered-To: mailing list commits@ctakes.apache.org Received: (qmail 94656 invoked by uid 99); 5 Nov 2014 16:46:48 -0000 Received: from nike.apache.org (HELO nike.apache.org) (192.87.106.230) by apache.org (qpsmtpd/0.29) with ESMTP; Wed, 05 Nov 2014 16:46:48 +0000 X-ASF-Spam-Status: No, hits=-2000.0 required=5.0 tests=ALL_TRUSTED X-Spam-Check-By: apache.org Received: from [140.211.11.4] (HELO eris.apache.org) (140.211.11.4) by apache.org (qpsmtpd/0.29) with ESMTP; Wed, 05 Nov 2014 16:46:22 +0000 Received: from eris.apache.org (localhost [127.0.0.1]) by eris.apache.org (Postfix) with ESMTP id 86BAB23888D2; Wed, 5 Nov 2014 16:45:49 +0000 (UTC) Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Subject: svn commit: r1636916 - in /ctakes/trunk/ctakes-assertion/desc/analysis_engine: GenericCleartkAnalysisEngine.xml HistoryCleartkAnalysisEngine.xml PolarityCleartkAnalysisEngine.xml SubjectCleartkAnalysisEngine.xml UncertaintyCleartkAnalysisEngine.xml Date: Wed, 05 Nov 2014 16:45:49 -0000 To: commits@ctakes.apache.org From: chenpei@apache.org X-Mailer: svnmailer-1.0.9 Message-Id: <20141105164549.86BAB23888D2@eris.apache.org> X-Virus-Checked: Checked by ClamAV on apache.org Author: chenpei Date: Wed Nov 5 16:45:48 2014 New Revision: 1636916 URL: http://svn.apache.org/r1636916 Log: CTAKES-326 - Added the descriptors for the new clearTK based Assertion annotators for backwards compatibility and needed by current DefaultAggregate pipelines. Added: ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml (with props) ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml (with props) ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml (with props) ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml (with props) ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml (with props) Added: ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml?rev=1636916&view=auto ============================================================================== --- ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml (added) +++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml Wed Nov 5 16:45:48 2014 @@ -0,0 +1,130 @@ + + org.apache.uima.java + true + org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine + + org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine + Descriptor automatically generated by uimaFIT + unknown + org.apache.ctakes.assertion.medfacts.cleartk + + + GoldViewName + view containing the manual identified annotations (especially EntityMention and EventMention annotations); needed for training + String + false + false + + + PrintErrors + Print errors true/false + Boolean + false + false + + + ProbabilityOfKeepingADefaultExample + probability that a default example should be retained for training + Float + false + false + + + PortionOfDataToUse + How much data to actually use during training (e.g. for building learning curves) + Float + false + false + + + WhetherToDoFeatureSelection + the Chi-squared threshold at which features should be removed + Float + false + false + + + FEATURE_CONFIG + Feature configuration to use (for experiments) + String + false + false + + + FeatureSelectionURI + provides a URI where the feature selection data will be written + String + false + false + + + mapTrainFileToDomain + a map of filenames to their respective domains (i.e., directories that contain them) + String + false + false + + + classifierFactoryClassName + provides the full name of the ClassifierFactory class to be used. + String + false + false + + + dataWriterFactoryClassName + provides the full name of the DataWriterFactory class to be used. + String + false + false + + + isTraining + determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set. + Boolean + false + false + + + classifierJarPath + String + false + false + + + + + PrintErrors + + false + + + + classifierFactoryClassName + + org.cleartk.ml.jar.JarClassifierFactory + + + + dataWriterFactoryClassName + + org.cleartk.ml.jar.DefaultDataWriterFactory + + + + classifierJarPath + + org/apache/ctakes/assertion/models/generic/model.jar + + + + + + + + true + true + false + + + Propchange: ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml ------------------------------------------------------------------------------ svn:eol-style = native Added: ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml?rev=1636916&view=auto ============================================================================== --- ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml (added) +++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml Wed Nov 5 16:45:48 2014 @@ -0,0 +1,130 @@ + + org.apache.uima.java + true + org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine + + org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine + Descriptor automatically generated by uimaFIT + unknown + org.apache.ctakes.assertion.medfacts.cleartk + + + GoldViewName + view containing the manual identified annotations (especially EntityMention and EventMention annotations); needed for training + String + false + false + + + PrintErrors + Print errors true/false + Boolean + false + false + + + ProbabilityOfKeepingADefaultExample + probability that a default example should be retained for training + Float + false + false + + + PortionOfDataToUse + How much data to actually use during training (e.g. for building learning curves) + Float + false + false + + + WhetherToDoFeatureSelection + the Chi-squared threshold at which features should be removed + Float + false + false + + + FEATURE_CONFIG + Feature configuration to use (for experiments) + String + false + false + + + FeatureSelectionURI + provides a URI where the feature selection data will be written + String + false + false + + + mapTrainFileToDomain + a map of filenames to their respective domains (i.e., directories that contain them) + String + false + false + + + classifierFactoryClassName + provides the full name of the ClassifierFactory class to be used. + String + false + false + + + dataWriterFactoryClassName + provides the full name of the DataWriterFactory class to be used. + String + false + false + + + isTraining + determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set. + Boolean + false + false + + + classifierJarPath + String + false + false + + + + + PrintErrors + + false + + + + classifierFactoryClassName + + org.cleartk.ml.jar.JarClassifierFactory + + + + dataWriterFactoryClassName + + org.cleartk.ml.jar.DefaultDataWriterFactory + + + + classifierJarPath + + org/apache/ctakes/assertion/models/historyOf/model.jar + + + + + + + + true + true + false + + + Propchange: ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml ------------------------------------------------------------------------------ svn:eol-style = native Added: ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml?rev=1636916&view=auto ============================================================================== --- ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml (added) +++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml Wed Nov 5 16:45:48 2014 @@ -0,0 +1,136 @@ + + org.apache.uima.java + true + org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine + + org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine + Descriptor automatically generated by uimaFIT + unknown + org.apache.ctakes.assertion.medfacts.cleartk + + + GoldViewName + view containing the manual identified annotations (especially EntityMention and EventMention annotations); needed for training + String + false + false + + + PrintErrors + Print errors true/false + Boolean + false + false + + + ProbabilityOfKeepingADefaultExample + probability that a default example should be retained for training + Float + false + false + + + PortionOfDataToUse + How much data to actually use during training (e.g. for building learning curves) + Float + false + false + + + WhetherToDoFeatureSelection + the Chi-squared threshold at which features should be removed + Float + false + false + + + FEATURE_CONFIG + Feature configuration to use (for experiments) + String + false + false + + + FeatureSelectionURI + provides a URI where the feature selection data will be written + String + false + false + + + mapTrainFileToDomain + a map of filenames to their respective domains (i.e., directories that contain them) + String + false + false + + + classifierFactoryClassName + provides the full name of the ClassifierFactory class to be used. + String + false + false + + + dataWriterFactoryClassName + provides the full name of the DataWriterFactory class to be used. + String + false + false + + + isTraining + determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set. + Boolean + false + false + + + classifierJarPath + String + false + false + + + + + PrintErrors + + false + + + + classifierFactoryClassName + + org.cleartk.ml.jar.JarClassifierFactory + + + + dataWriterFactoryClassName + + org.cleartk.ml.jar.DefaultDataWriterFactory + + + + FEATURE_CONFIG + + DEP_REGEX + + + + classifierJarPath + + org/apache/ctakes/assertion/models/polarity/sharpi2b2mipacqnegex/model.jar + + + + + + + + true + true + false + + + Propchange: ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml ------------------------------------------------------------------------------ svn:eol-style = native Added: ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml?rev=1636916&view=auto ============================================================================== --- ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml (added) +++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml Wed Nov 5 16:45:48 2014 @@ -0,0 +1,136 @@ + + org.apache.uima.java + true + org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine + + org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine + Descriptor automatically generated by uimaFIT + unknown + org.apache.ctakes.assertion.medfacts.cleartk + + + GoldViewName + view containing the manual identified annotations (especially EntityMention and EventMention annotations); needed for training + String + false + false + + + PrintErrors + Print errors true/false + Boolean + false + false + + + ProbabilityOfKeepingADefaultExample + probability that a default example should be retained for training + Float + false + false + + + PortionOfDataToUse + How much data to actually use during training (e.g. for building learning curves) + Float + false + false + + + WhetherToDoFeatureSelection + the Chi-squared threshold at which features should be removed + Float + false + false + + + FEATURE_CONFIG + Feature configuration to use (for experiments) + String + false + false + + + FeatureSelectionURI + provides a URI where the feature selection data will be written + String + false + false + + + mapTrainFileToDomain + a map of filenames to their respective domains (i.e., directories that contain them) + String + false + false + + + classifierFactoryClassName + provides the full name of the ClassifierFactory class to be used. + String + false + false + + + dataWriterFactoryClassName + provides the full name of the DataWriterFactory class to be used. + String + false + false + + + isTraining + determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set. + Boolean + false + false + + + classifierJarPath + String + false + false + + + + + PrintErrors + + false + + + + classifierFactoryClassName + + org.cleartk.ml.jar.JarClassifierFactory + + + + dataWriterFactoryClassName + + org.cleartk.ml.jar.DefaultDataWriterFactory + + + + FEATURE_CONFIG + + DEP_REGEX + + + + classifierJarPath + + org/apache/ctakes/assertion/models/subject/model.jar + + + + + + + + true + true + false + + + Propchange: ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml ------------------------------------------------------------------------------ svn:eol-style = native Added: ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml?rev=1636916&view=auto ============================================================================== --- ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml (added) +++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml Wed Nov 5 16:45:48 2014 @@ -0,0 +1,136 @@ + + org.apache.uima.java + true + org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine + + org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine + Descriptor automatically generated by uimaFIT + unknown + org.apache.ctakes.assertion.medfacts.cleartk + + + GoldViewName + view containing the manual identified annotations (especially EntityMention and EventMention annotations); needed for training + String + false + false + + + PrintErrors + Print errors true/false + Boolean + false + false + + + ProbabilityOfKeepingADefaultExample + probability that a default example should be retained for training + Float + false + false + + + PortionOfDataToUse + How much data to actually use during training (e.g. for building learning curves) + Float + false + false + + + WhetherToDoFeatureSelection + the Chi-squared threshold at which features should be removed + Float + false + false + + + FEATURE_CONFIG + Feature configuration to use (for experiments) + String + false + false + + + FeatureSelectionURI + provides a URI where the feature selection data will be written + String + false + false + + + mapTrainFileToDomain + a map of filenames to their respective domains (i.e., directories that contain them) + String + false + false + + + classifierFactoryClassName + provides the full name of the ClassifierFactory class to be used. + String + false + false + + + dataWriterFactoryClassName + provides the full name of the DataWriterFactory class to be used. + String + false + false + + + isTraining + determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set. + Boolean + false + false + + + classifierJarPath + String + false + false + + + + + PrintErrors + + false + + + + classifierFactoryClassName + + org.cleartk.ml.jar.JarClassifierFactory + + + + dataWriterFactoryClassName + + org.cleartk.ml.jar.DefaultDataWriterFactory + + + + FEATURE_CONFIG + + DEP_REGEX + + + + classifierJarPath + + org/apache/ctakes/assertion/models/uncertainty/model.jar + + + + + + + + true + true + false + + + Propchange: ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml ------------------------------------------------------------------------------ svn:eol-style = native