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From chen...@apache.org
Subject svn commit: r1636952 - in /ctakes/trunk: ctakes-assertion/desc/analysis_engine/ ctakes-clinical-pipeline/desc/analysis_engine/
Date Wed, 05 Nov 2014 20:38:23 GMT
Author: chenpei
Date: Wed Nov  5 20:38:22 2014
New Revision: 1636952

URL: http://svn.apache.org/r1636952
Log:
CTAKES-326 - Defaulting to the new clearTK based Assertion annotators.

Modified:
    ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml
    ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml
    ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml
    ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml
    ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml
    ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor.xml
    ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml

Modified: ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
--- ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml (original)
+++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml Wed
Nov  5 20:38:22 2014
@@ -114,7 +114,7 @@
             <nameValuePair>
                 <name>classifierJarPath</name>
                 <value>
-                    <string>org/apache/ctakes/assertion/models/generic/model.jar</string>
+                    <string>/org/apache/ctakes/assertion/models/generic/model.jar</string>
                 </value>
             </nameValuePair>
         </configurationParameterSettings>

Modified: ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
--- ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml (original)
+++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml Wed
Nov  5 20:38:22 2014
@@ -114,7 +114,7 @@
             <nameValuePair>
                 <name>classifierJarPath</name>
                 <value>
-                    <string>org/apache/ctakes/assertion/models/historyOf/model.jar</string>
+                    <string>/org/apache/ctakes/assertion/models/historyOf/model.jar</string>
                 </value>
             </nameValuePair>
         </configurationParameterSettings>

Modified: ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
--- ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml (original)
+++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml Wed
Nov  5 20:38:22 2014
@@ -120,7 +120,7 @@
             <nameValuePair>
                 <name>classifierJarPath</name>
                 <value>
-                    <string>org/apache/ctakes/assertion/models/polarity/sharpi2b2mipacqnegex/model.jar</string>
+                    <string>/org/apache/ctakes/assertion/models/polarity/sharpi2b2mipacqnegex/model.jar</string>
                 </value>
             </nameValuePair>
         </configurationParameterSettings>

Modified: ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
--- ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml (original)
+++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml Wed
Nov  5 20:38:22 2014
@@ -120,7 +120,7 @@
             <nameValuePair>
                 <name>classifierJarPath</name>
                 <value>
-                    <string>org/apache/ctakes/assertion/models/subject/model.jar</string>
+                    <string>/org/apache/ctakes/assertion/models/subject/model.jar</string>
                 </value>
             </nameValuePair>
         </configurationParameterSettings>

Modified: ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
--- ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml
(original)
+++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml
Wed Nov  5 20:38:22 2014
@@ -120,7 +120,7 @@
             <nameValuePair>
                 <name>classifierJarPath</name>
                 <value>
-                    <string>org/apache/ctakes/assertion/models/uncertainty/model.jar</string>
+                    <string>/org/apache/ctakes/assertion/models/uncertainty/model.jar</string>
                 </value>
             </nameValuePair>
         </configurationParameterSettings>

Modified: ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
--- ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor.xml
(original)
+++ ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor.xml
Wed Nov  5 20:38:22 2014
@@ -158,8 +158,8 @@ Includes adjusting NP chunks to include 
         <!-- <node>AssertionAnnotator</node> -->
         <!-- <node>StatusAnnotator</node> -->
        	<!-- <node>NegationAnnotator</node> -->
-       	<node>GenericCleartkAnalysisEngine"></node>
-		<node>HistoryCleartkAnalysisEngine"></node>
+       	<node>GenericCleartkAnalysisEngine</node>
+		<node>HistoryCleartkAnalysisEngine</node>
 		<node>PolarityCleartkAnalysisEngine</node>
 		<node>SubjectCleartkAnalysisEngine</node>
 		<node>UncertaintyCleartkAnalysisEngine</node>

Modified: ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
--- ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml
(original)
+++ ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml
Wed Nov  5 20:38:22 2014
@@ -169,8 +169,8 @@ and requires an UMLS license.  Please up
         <!-- <node>AssertionAnnotator</node> -->
         <!-- <node>StatusAnnotator</node> -->
        	<!-- <node>NegationAnnotator</node> -->
-       	<node>GenericCleartkAnalysisEngine"></node>
-		<node>HistoryCleartkAnalysisEngine"></node>
+       	<node>GenericCleartkAnalysisEngine</node>
+		<node>HistoryCleartkAnalysisEngine</node>
 		<node>PolarityCleartkAnalysisEngine</node>
 		<node>SubjectCleartkAnalysisEngine</node>
 		<node>UncertaintyCleartkAnalysisEngine</node>



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