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From tm...@apache.org
Subject svn commit: r1595990 [2/2] - in /ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/auto: ./ defaultPipeline.xml
Date Mon, 19 May 2014 19:00:31 GMT

Added: ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/auto/defaultPipeline.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/auto/defaultPipeline.xml?rev=1595990&view=auto
==============================================================================
--- ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/auto/defaultPipeline.xml (added)
+++ ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/auto/defaultPipeline.xml Mon May 19 19:00:30 2014
@@ -0,0 +1,35809 @@
+<?xml version="1.0" encoding="UTF-8"?><analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
+    <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+    <primitive>false</primitive>
+    <delegateAnalysisEngineSpecifiers>
+        <delegateAnalysisEngine key="aggregate">
+            <analysisEngineDescription>
+                <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+                <primitive>false</primitive>
+                <delegateAnalysisEngineSpecifiers>
+                    <delegateAnalysisEngine key="org.apache.ctakes.core.ae.TokenizerAnnotatorPTB">
+                        <analysisEngineDescription>
+                            <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+                            <primitive>true</primitive>
+                            <annotatorImplementationName>org.apache.ctakes.core.ae.TokenizerAnnotatorPTB</annotatorImplementationName>
+                            <analysisEngineMetaData>
+                                <name>org.apache.ctakes.core.ae.TokenizerAnnotatorPTB</name>
+                                <description>Descriptor automatically generated by uimaFIT</description>
+                                <version>unknown</version>
+                                <vendor>org.apache.ctakes.core.ae</vendor>
+                                <configurationParameters>
+                                    <configurationParameter>
+                                        <name>SegmentsToSkip</name>
+                                        <description>Set of segments that can be skipped</description>
+                                        <type>String</type>
+                                        <multiValued>true</multiValued>
+                                        <mandatory>false</mandatory>
+                                    </configurationParameter>
+                                </configurationParameters>
+                                <configurationParameterSettings/>
+                                <typeSystemDescription>
+                                    <types>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.assertion.medfacts.types.Assertion</name>
+                                            <description/>
+                                            <supertypeName>uima.tcas.Annotation</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>assertionType</name>
+                                                    <description>assertion type -- one of present, absent, possible, conditional, hypothetical, or assocated_with_someone_else</description>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>associatedConcept</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.assertion.medfacts.types.Concept</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.assertion.medfacts.types.Concept</name>
+                                            <description/>
+                                            <supertypeName>uima.tcas.Annotation</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>conceptType</name>
+                                                    <description>the concept type -- one of problem, treatment, or test</description>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>conceptText</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>externalId</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>originalEntityExternalId</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree</name>
+                                            <description/>
+                                            <supertypeName>uima.tcas.Annotation</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>label</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>tree</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.AnatomicalSite</name>
+                                            <description>A body part or area, corresponding to the UMLS semantic group of Anatomy.  An Entity based on generic Clinical Element Models (CEMs)</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Entity</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>bodyLaterality</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodyLaterality</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>bodySide</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodySide</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.Attribute</name>
+                                            <description>The semantic encapsulation of a modifer.  E.g., for Clinical Elements, Attributes may be used to specify Body Side for a Procedure.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Element</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.BodyLaterality</name>
+                                            <description>The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.). This is finer-grained to allow combinations of values.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.BodySide</name>
+                                            <description>Value set: unmarked (default), left, right, bilateral</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.Course</name>
+                                            <description>An indication of progress or decline of a condition.  Value set: unmarked (default), changed, increased, decreased, improved, worsened, resolved</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.Date</name>
+                                            <description>A normalized form for dates, namely with day, month, and year.  A subtype of Element but may not use all inherited attributes.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Element</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>day</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>month</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>year</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder</name>
+                                            <description>This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).  Based on generic Clinical Element Models (CEMs)</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Event</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>alleviatingFactor</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>associatedSignSymptom</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ManifestationOf</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>bodyLaterality</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodyLaterality</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>bodySide</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodySide</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>bodyLocation</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.LocationOf</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>course</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Course</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>duration</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>endTime</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>exacerbatingFactor</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>startTime</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>relativeTemporalContext</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.Element</name>
+                                            <description>A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.  Element inherits from uima.cas.TOP to combine textual mentions of these real-world objects.</description>
+                                            <supertypeName>uima.cas.TOP</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>id</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>ontologyConcept</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.OntologyConcept</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>mentions</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.FSArray</rangeTypeName>
+                                                    <elementType>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</elementType>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>discoveryTechnique</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>confidence</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Double</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>conditional</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>generic</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>subject</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>polarity</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>uncertainty</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>historyOf</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.Entity</name>
+                                            <description>A real-world entity such as a body part.  For example, multiple Procedures may have the same AnatomicalSite entity for their locations.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Element</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.Event</name>
+                                            <description>A real-world event; similar to Entity, but may bear some temporal properties and relationships.  In the constrained clinical context, many concepts are discussed as instances with some temporal component, e.g., Medications, Labs.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Element</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>properties</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.EventProperties</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.EventProperties</name>
+                                            <description>A set of mostly temporal properties that are unique to Events.</description>
+                                            <supertypeName>uima.cas.TOP</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>contextualModality</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>contextualAspect</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>permanence</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>category</name>
+                                                    <description>Type of Event.</description>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>aspect</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>docTimeRel</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>degree</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>polarity</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.Lab</name>
+                                            <description>This is an Event from the UMLS semantic group of Laboratory Procedures.  Based on generic Clinical Element Models (CEMs)</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Event</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>abnormalInterpretation</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.DegreeOf</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>deltaFlag</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>labValue</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.LabValue</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>ordinalInterpretation</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.DegreeOf</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>referenceRangeNarrative</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.LabReferenceRange</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag</name>
+                                            <description>An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.LabReferenceRange</name>
+                                            <description>Holds a narrative (i.e. string) reference range</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.LabValue</name>
+                                            <description>Quantitative results of a laboratory, with number and unit.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>number</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>unit</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.Medication</name>
+                                            <description>This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source.  Based on generic Clinical Element Models (CEMs)</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Event</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>medicationFrequency</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationFrequency</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>medicationDuration</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationDuration</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>medicationRoute</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationRoute</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>medicationStatusChange</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>medicationDosage</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationDosage</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>medicationStrength</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationStrength</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>medicationForm</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationForm</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>startDate</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Date</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>endDate</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Date</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>relativeTemporalContext</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.MedicationDosage</name>
+                                            <description>Dosage indicates how much of a prescribed drug should be taken.  E.g. "one" in "one 5 mg tablet twice-a-day for 2 weeks"</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.MedicationDuration</name>
+                                            <description>The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.MedicationForm</name>
+                                            <description>Form of this medication.  Value set includes tablet, capsule, liquid, inhalant, gel, other, etc.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.MedicationFrequency</name>
+                                            <description>How often a medication should be used. e.g., BID or b.i.d. or "twice-a-day" would have a number=2 and unit=day.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>number</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>unit</name>
+                                                    <description>The periodic unit used, e.g day, month, hour, etc.</description>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.MedicationRoute</name>
+                                            <description>Means by which the medication was taken or administered.  Value set includes Topical, Enteral_Oral, Parenteral_Intravenous, Other, undetermined, etc.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange</name>
+                                            <description>Status refers to the whether the medication is currently being taken or not.  Value set: start, stop, increase, decrease, no change.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description>Indicates the change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.</description>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.MedicationStrength</name>
+                                            <description>Strength indicates the strength number and unit of the prescribed drug.  E.g. "5 mg" in "one 5 mg tablet twice-a-day for 2 weeks"</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>number</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>unit</name>
+                                                    <description>the unit of measurement</description>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.OntologyConcept</name>
+                                            <description>Ontologies (e.g., SNOMED-CT) provide an expert semantic representation for concepts. They typically assign a code to a concept and normalize across various textual representations of that concept.  
+IdentifiedAnnotation and Elements may point to these normalized concept representations to indicate clinical concepts.
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.OntologyConcept</description>
+                                            <supertypeName>uima.cas.TOP</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>codingScheme</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>code</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>oid</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>oui</name>
+                                                    <description>holds the rxnorm unique identifier for a given drug mention.
+							TODO: change this attribute because of name clash (UMLS/SNOMED)</description>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>score</name>
+                                                    <description>Word Sense disambiguation: if this named entity is assigned multiple ontologyConcepts, the score represents how similar this sense is to surrounding senses (higher scores = more likely to be the correct sense)</description>
+                                                    <rangeTypeName>uima.cas.Double</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>disambiguated</name>
+                                                    <description>Word Sense disambiguation: if this named entity is assigned multiple ontologyConcepts, then the OntologyConcept with disambiguated=true is the most likely sense</description>
+                                                    <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.Procedure</name>
+                                            <description>This is an Event from the UMLS semantic group of Procedures (except that Laboratory procedures are separate).  Based on generic Clinical Element Models (CEMs)</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Event</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>bodyLaterality</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodyLaterality</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>bodySide</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodySide</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>bodyLocation</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.LocationOf</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>procedureDevice</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.ProcedureDevice</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>duration</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>endTime</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>method</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.ProcedureMethod</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>startTime</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>relativeTemporalContext</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.ProcedureDevice</name>
+                                            <description>Corresponds to the UMLS Devices semantic group: medical device and research device. 
+Example: arterial line has a Medical Device semantic type. This is qualifying information on how a procedure was done.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.ProcedureMethod</name>
+                                            <description>The way or the equipment used to give or administration something (medication, test). This corresponds to the Procedures UMLS semantic group.
+More qualifying information on how the procedure was done.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.Severity</name>
+                                            <description>An explicitly-mentioned indication of the seriousness of a condition.  Value Set: unmarked (default), severe, moderate, slight</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>value</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.SignSymptom</name>
+                                            <description>This is an Event from the UMLS semantic group of Sign or Symtom.  Based on generic Clinical Element Models (CEMs)</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Event</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>alleviatingFactor</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>bodyLaterality</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodyLaterality</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>bodySide</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodySide</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>bodyLocation</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.LocationOf</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>course</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Course</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>duration</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>endTime</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>exacerbatingFactor</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>severity</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>startTime</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>relativeTemporalContext</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.Time</name>
+                                            <description>A normalized form for Time annotations.  Inherits from Element, but some fields may be unused.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.Element</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>normalizedForm</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.refsem.UmlsConcept</name>
+                                            <description>Concepts in the Unified Medical Language System (UMLS) Metathesaurus have a concept unique identifier (CUI) and a type unique identifier (TUI, i.e., semantic type) which are curated, normalized codes. For example, "pain" would have a cui=C0030193 and tui=T184.
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.UmlsConcept</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.refsem.OntologyConcept</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>cui</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>tui</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.Affects</name>
+                                            <description>A UMLS relation between clinical elements.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.AffectsTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.AspectualTextRelation</name>
+                                            <description>A UMLS relation between clinical elements.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.AttributeRelation</name>
+                                            <description>A real-world relationship between an Element and an Attribute.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.Relation</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>arg1</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Element</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>arg2</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</name>
+                                            <description>A super-type for relationships between two spans of text.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.Relation</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>arg1</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.RelationArgument</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>arg2</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.relation.RelationArgument</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.CausesBringsAbout</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.CollectionTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.Relation</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>members</name>
+                                                    <description>A super-type for relationships between multiple spans of text.</description>
+                                                    <rangeTypeName>uima.cas.FSList</rangeTypeName>
+                                                    <elementType>org.apache.ctakes.typesystem.type.relation.RelationArgument</elementType>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.Contraindicates</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.CoreferenceRelation</name>
+                                            <description>A coreference pair, with antecedent as arg1 and anaphor as arg2</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.DegreeOf</name>
+                                            <description>A UMLS relation between an attribute and an entity/event.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.AttributeRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.Diagnoses</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.ElementRelation</name>
+                                            <description>A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.Relation</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>arg1</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Element</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>arg2</name>
+                                                    <description/>
+                                                    <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Element</rangeTypeName>
+                                                </featureDescription>
+                                            </features>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.Indicates</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.IsIndicatedFor</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.LocationOf</name>
+                                            <description>A UMLS relation between clinical elements.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.ManagesTreats</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.ManifestationOf</name>
+                                            <description>A UMLS relation between clinical elements.</description>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.Prevents</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.PreventsTextRelation</name>
+                                            <description/>
+                                            <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                                        </typeDescription>
+                                        <typeDescription>
+                                            <name>org.apache.ctakes.typesystem.type.relation.Relation</name>
+                                            <description>A superclass for semantic relationships between Elements.  For example, one might consider TemporalRelations or UMLSRelations between a Medication and a Disorder.  The "category" feature indicates what kind of relation it is.</description>
+                                            <supertypeName>uima.cas.TOP</supertypeName>
+                                            <features>
+                                                <featureDescription>
+                                                    <name>id</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>category</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.String</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>discoveryTechnique</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>confidence</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Double</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>polarity</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>uncertainty</name>
+                                                    <description/>
+                                                    <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                                                </featureDescription>
+                                                <featureDescription>
+                                                    <name>conditional</name>

[... 34772 lines stripped ...]


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