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From chen...@apache.org
Subject svn commit: r1588552 [27/42] - in /ctakes/sandbox/ctakes-web-client: ./ .settings/ WebContent/ WebContent/META-INF/ WebContent/WEB-INF/ WebContent/WEB-INF/lib/ src/ src/main/ src/main/java/ src/main/java/org/ src/main/java/org/apache/ src/main/java/org...
Date Fri, 18 Apr 2014 19:48:35 GMT
Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,56 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
+  <name>RelationArgument</name>
+  <description/>
+  <version>1.0</version>
+  <vendor/>
+  <types>
+    <typeDescription>
+      <name>org.apache.ctakes.coreference.type.RelationArgument</name>
+      <description/>
+      <supertypeName>uima.cas.TOP</supertypeName>
+      <features>
+        <featureDescription>
+          <name>id</name>
+          <description/>
+          <rangeTypeName>uima.cas.Integer</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>argument</name>
+          <description/>
+          <rangeTypeName>uima.tcas.Annotation</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>role</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+      </features>
+    </typeDescription>
+    <typeDescription>
+      <name>org.apache.ctakes.coreference.type.UnrelationArgument</name>
+      <description>A relation argument for a negative example.  Used mainly for debugging.</description>
+      <supertypeName>org.apache.ctakes.coreference.type.RelationArgument</supertypeName>
+    </typeDescription>
+  </types>
+</typeSystemDescription>

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,110 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
+  <name>org.apache.ctakes.coreference.types.TypeSystem</name>
+  <description/>
+  <version>1.0</version>
+  <vendor/>
+  <imports>
+    <import location="Pair.xml"/>
+    <import location="BooleanLabeledFS.xml"/>
+  </imports>
+  <types>
+    <typeDescription>
+      <name>org.apache.ctakes.coreference.type.Markable</name>
+      <description/>
+      <supertypeName>uima.tcas.Annotation</supertypeName>
+      <features>
+        <featureDescription>
+          <name>content</name>
+          <description>The markable instance, i.e., a Named Entity, pronoun Token, etc.</description>
+          <rangeTypeName>uima.tcas.Annotation</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>id</name>
+          <description/>
+          <rangeTypeName>uima.cas.Integer</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>anaphoric_prob</name>
+          <description/>
+          <rangeTypeName>uima.cas.Double</rangeTypeName>
+        </featureDescription>
+      </features>
+    </typeDescription>
+    <typeDescription>
+      <name>org.apache.ctakes.coreference.type.PronounMarkable</name>
+      <description/>
+      <supertypeName>org.apache.ctakes.coreference.type.Markable</supertypeName>
+    </typeDescription>
+    <typeDescription>
+      <name>org.apache.ctakes.coreference.type.NEMarkable</name>
+      <description/>
+      <supertypeName>org.apache.ctakes.coreference.type.Markable</supertypeName>
+    </typeDescription>
+    <typeDescription>
+      <name>org.apache.ctakes.coreference.type.DemMarkable</name>
+      <description/>
+      <supertypeName>org.apache.ctakes.coreference.type.Markable</supertypeName>
+    </typeDescription>
+    <typeDescription>
+      <name>org.apache.ctakes.coreference.type.MarkablePair</name>
+      <description/>
+      <supertypeName>uima.cas.TOP</supertypeName>
+      <features>
+        <featureDescription>
+          <name>antecedent</name>
+          <description>Proposed antecedent</description>
+          <rangeTypeName>org.apache.ctakes.coreference.type.Markable</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>anaphor</name>
+          <description/>
+          <rangeTypeName>org.apache.ctakes.coreference.type.Markable</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>label</name>
+          <description>Is this pair coreferent?</description>
+          <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+        </featureDescription>
+      </features>
+    </typeDescription>
+    <typeDescription>
+      <name>org.apache.ctakes.coreference.type.MarkablePairSet</name>
+      <description/>
+      <supertypeName>uima.tcas.Annotation</supertypeName>
+      <features>
+        <featureDescription>
+          <name>anaphor</name>
+          <description/>
+          <rangeTypeName>org.apache.ctakes.coreference.type.Markable</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>antecedentList</name>
+          <description/>
+          <rangeTypeName>uima.cas.FSList</rangeTypeName>
+          <elementType>org.chboston.cnlp.ctakes.common.BooleanLabeledFS</elementType>
+        </featureDescription>
+      </features>
+    </typeDescription>
+  </types>
+</typeSystemDescription>

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,88 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
+  <name>VecInst</name>
+  <description/>
+  <version>1.0</version>
+  <vendor/>
+  <types>
+    <typeDescription>
+      <name>org.apache.ctakes.coreference.type.VecInstance</name>
+      <description/>
+      <supertypeName>uima.cas.TOP</supertypeName>
+      <features>
+        <featureDescription>
+          <name>vector</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>a1</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>a2</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>offset1</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>offset2</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>classifier</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+      </features>
+    </typeDescription>
+    <typeDescription>
+      <name>org.apache.ctakes.coreference.type.AnaphoricityVecInstance</name>
+      <description/>
+      <supertypeName>uima.cas.TOP</supertypeName>
+      <features>
+        <featureDescription>
+          <name>vector</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>m</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>offset</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+      </features>
+    </typeDescription>
+  </types>
+</typeSystemDescription>

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/clearparser_models.jar
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/clearparser_models.jar?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README Fri Apr 18 19:47:21 2014
@@ -0,0 +1,26 @@
+#################
+additional models
+#################
+
+There is an additional model available from the ClearTK downloads page:
+
+https://code.google.com/p/clearnlp/
+
+and is called mayo-en-dep-1.3.0.jar.  This model is built from
+both the training data and development data from the CoNLL 2009 shared task (see
+links above).  This model was provided by Jinho Choi.
+
+#####
+Notes
+#####
+
+- Both models were trained using PennTreebank part-of-speech tags.  So, your input part-of-speech
+tags should match the tags used for training this model.  The part-of-speech tag for punctuation 
+symbols such as "." "," ":" ";" "(" ")" etc. are the symbols themselves (i.e. the part-of-speech tag
+for the token ")" should be ")".)  This may be inconsistent with other PTB-derived tagging schemes that
+may use tags such as "COLON" or "RRB".  Your part-of-speech tags should be modified to be consistent with
+the tagging scheme used here.
+
+- The dependency labeling scheme produced by the models provided here is separate/different from that of
+the Malt parser models used by ClearTK's wrapper of the Malt parser.  You should not assume that 
+the wrapper for the Clear Parser can be used interchangeably with the wrapper for the Malt Parser.      
\ No newline at end of file

Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/mayo-en-dep-1.3.0.jar
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/mayo-en-dep-1.3.0.jar?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README Fri Apr 18 19:47:21 2014
@@ -0,0 +1,2 @@
+The file dictionary-1.3.0.jar was obtained directly from the author of
+clearn NLP, Jinho Choi.
\ No newline at end of file

Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/dictionary-1.3.1.jar
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/dictionary-1.3.1.jar?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/pred/mayo-en-pred-1.3.0.jar
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/pred/mayo-en-pred-1.3.0.jar?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/role/mayo-en-role-1.3.0.jar
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/role/mayo-en-role-1.3.0.jar?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README Fri Apr 18 19:47:21 2014
@@ -0,0 +1,29 @@
+############################
+mayo-en-srl-1.3.0.jar, ../pred/mayo-en,pred-1.3.0.jar, ../role/mayo-en-role-1.3.0.jar
+############################
+The model mayo-en-srl-1.3.0.jar was provided by Jinho Choi and is trained on the 
+development set of the OntoNotes corpus version 4.0.  More information about this data can 
+be found here:
+http://www.ldc.upenn.edu/Catalog/docs/LDC2011T03/OntoNotes-Release-4.0.pdf
+
+This model produces semantic role labels over a dependency tree.  So unlike PropBank,
+predicates and arguments only span the head expression.  Knowing the full argument span
+will require traversal of the dependency tree.
+
+#####
+Notes
+#####
+
+- Both models were trained using PennTreebank part-of-speech tags.  So, your input part-of-speech
+tags should match the tags used for training this model.  The part-of-speech tag for punctuation 
+symbols such as "." "," ":" ";" "(" ")" etc. are the symbols themselves (i.e. the part-of-speech tag
+for the token ")" should be ")".)  This may be inconsistent with other PTB-derived tagging schemes that
+may use tags such as "COLON" or "RRB".  Your part-of-speech tags should be modified to be consistent with
+the tagging scheme used here.
+
+- The models also depend on a dependency tree produced by the ClearNLP dependency parser.  This should be
+run prior to running ClearNLP semantic role labeler.
+
+- The dependency labeling scheme produced by the models provided here is separate/different from that of
+the Malt parser models used by ClearTK's wrapper of the Malt parser.  You should not assume that 
+the wrapper for the Clear Parser can be used interchangeably with the wrapper for the Malt Parser.      
\ No newline at end of file

Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/mayo-en-srl-1.3.0.jar
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/mayo-en-srl-1.3.0.jar?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,117 @@
+<?xml version="1.0" encoding="UTF-8"?><taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
+  <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+  <primitive>true</primitive>
+  <annotatorImplementationName>org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator</annotatorImplementationName>
+  <analysisEngineMetaData>
+    <name>AssertionCuePhraseDictionaryLookupAnnotator</name>
+    <description/>
+    <version/>
+    <vendor/>
+    <configurationParameters>
+      <configurationParameter>
+        <name>maxListSize</name>
+        <description>Specifies the maximum number of items to be returned from an lucene query.</description>
+        <type>Integer</type>
+        <multiValued>false</multiValued>
+        <mandatory>false</mandatory>
+      </configurationParameter>
+    </configurationParameters>
+    <configurationParameterSettings>
+      <nameValuePair>
+        <name>maxListSize</name>
+        <value>
+          <integer>2147483647</integer>
+        </value>
+      </nameValuePair>
+    </configurationParameterSettings>
+    <typeSystemDescription/>
+    <typePriorities/>
+    <fsIndexCollection/>
+    <capabilities>
+      <capability>
+        <inputs>
+          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.BaseToken</type>
+          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation</type>
+        </inputs>
+        <outputs>
+          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation</type>
+        </outputs>
+        <languagesSupported/>
+      </capability>
+    </capabilities>
+    <operationalProperties>
+      <modifiesCas>true</modifiesCas>
+      <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
+      <outputsNewCASes>false</outputsNewCASes>
+    </operationalProperties>
+  </analysisEngineMetaData>
+  <externalResourceDependencies>
+    <externalResourceDependency>
+      <key>AssertionCuePhraseIndexReader</key>
+      <description/>
+      <interfaceName>org.apache.ctakes.core.resource.LuceneIndexReaderResource</interfaceName>
+      <optional>false</optional>
+    </externalResourceDependency>
+  </externalResourceDependencies>
+  <resourceManagerConfiguration>
+    <externalResources>
+      <externalResource>
+        <name>AssertionCuePhraseIndex</name>
+        <description/>
+        <configurableDataResourceSpecifier>
+          <url/>
+          <resourceMetaData>
+            <name/>
+            <configurationParameters>
+              <configurationParameter>
+                <name>UseMemoryIndex</name>
+                <type>Boolean</type>
+                <multiValued>false</multiValued>
+                <mandatory>true</mandatory>
+              </configurationParameter>
+              <configurationParameter>
+                <name>IndexDirectory</name>
+                <type>String</type>
+                <multiValued>false</multiValued>
+                <mandatory>true</mandatory>
+              </configurationParameter>
+            </configurationParameters>
+            <configurationParameterSettings>
+              <nameValuePair>
+                <name>UseMemoryIndex</name>
+                <value>
+                  <boolean>true</boolean>
+                </value>
+              </nameValuePair>
+              <nameValuePair>
+                <name>IndexDirectory</name>
+                <value>
+                  <string>org/apache/ctakes/dictionary/lookup/assertion_cue_phrase_index</string>
+                </value>
+              </nameValuePair>
+            </configurationParameterSettings>
+          </resourceMetaData>
+        </configurableDataResourceSpecifier>
+        <implementationName>org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl</implementationName>
+      </externalResource>
+      <externalResource>
+        <name>LookupDescriptorFile</name>
+        <description/>
+        <fileResourceSpecifier>
+          <fileUrl>file:org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml</fileUrl>
+        </fileResourceSpecifier>
+        <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
+      </externalResource>
+    </externalResources>
+    <externalResourceBindings>
+      <externalResourceBinding>
+        <key>LookupDescriptor</key>
+        <resourceName>LookupDescriptorFile</resourceName>
+      </externalResourceBinding>
+      <externalResourceBinding>
+        <key>AssertionCuePhraseIndexReader</key>
+        <resourceName>AssertionCuePhraseIndex</resourceName>
+      </externalResourceBinding>
+    </externalResourceBindings>
+  </resourceManagerConfiguration>
+</taeDescription>

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml
------------------------------------------------------------------------------
    svn:mime-type = text/plain

Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,162 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<lookupSpecification>
+	<!--  Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+	<dictionaries>
+	
+	  <!--
+		<dictionary id="DICT_UMLS_MS" externalResourceKey="UmlsIndexReader" caseSensitive="false">
+			<implementation>
+				<luceneImpl/>
+			</implementation>
+			<lookupField fieldName="first_word"/>
+			<metaFields>
+				<metaField fieldName="cui"/>
+				<metaField fieldName="tui"/>
+				<metaField fieldName="text"/>
+			</metaFields>
+		</dictionary>
+		-->
+	
+	  <!--
+		<dictionary id="DICT_RXNORM" externalResourceKey="RxnormIndexReader" caseSensitive="false">
+			<implementation>
+				<luceneImpl/>
+			</implementation>
+			<lookupField fieldName="first_word"/>
+			<metaFields>
+				<metaField fieldName="code"/>
+				<metaField fieldName="preferred_designation"/>
+				<metaField fieldName="other_designation"/>
+			</metaFields>
+		</dictionary>
+		-->
+    <dictionary id="DICT_ASSERTION_CUE_PHRASE" externalResourceKey="AssertionCuePhraseIndexReader" caseSensitive="false">
+      <implementation>
+        <luceneImpl/>
+      </implementation>
+      <lookupField fieldName="cuePhrase"/>
+      <metaFields>
+        <metaField fieldName="cuePhrase"/>
+        <metaField fieldName="cuePhraseCategory"/>
+        <metaField fieldName="assertionCuePhraseFamily"/>
+      </metaFields>
+    </dictionary>
+
+	
+	</dictionaries>
+	<!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+	<lookupBindings>
+	
+	  <!--
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_UMLS_MS"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="text"/>
+					<property key="maxPermutationLevel" value="5"/>
+					<!- -	<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> - ->
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>  
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,PRP,PRP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedLuceneConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="SNOMED"/>
+					<property key="cuiMetaField" value="cui"/>
+					<property key="tuiMetaField" value="tui"/>
+					<property key="cuiMappingField" value="cui"/>
+					<property key="snomedCodeMappingField" value="code"/>
+					<!- - the following values are used as TUIs for testing: T_AS, T_PR, T_DD, T_SS - ->
+					<property key="anatomicalSiteTuis" value="T021,T022,T023,T024,T025,T026,T029,T030,T_AS"/>
+					<property key="procedureTuis" value="T059,T060,T061,T_PR"/>
+					<property key="disorderTuis" value="T019,T020,T037,T046,T047,T048,T049,T050,T190,T191,T_DD"/>
+					<property key="findingTuis" value="T033,T034,T040,T041,T042,T043,T044,T045,T046,T056,T057,T184,T_SS"/>
+					<property key="luceneFilterExtResrcKey" value="UmlsIndexReader"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+		-->
+	
+	  <!--
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_RXNORM"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="preferred_designation|other_designation"/>
+					<property key="maxPermutationLevel" value="7"/>
+					<!- -	<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> - ->
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>  
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="RXNORM"/>
+					<property key="codeMetaField" value="code"/>
+					<property key="luceneFilterExtResrcKey" value="OrangeBookIndexReader"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+		-->
+		
+    <lookupBinding>
+      <dictionaryRef idRef="DICT_ASSERTION_CUE_PHRASE"/>
+      <!-- org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl -->
+      <!-- org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl -->
+      <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl">
+        <properties>
+          <property key="textMetaFields" value="cuePhraseCategory"/>
+          <!--  <property key="maxPermutationLevel" value="7"/>  -->
+          <!--  <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+          <!--  org.apache.ctakes.typesystem.type.syntax.Chunk -->
+          <!--  org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation -->
+          <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.syntax.Chunk"/>  
+          <!--  <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/> -->
+        </properties>
+      </lookupInitializer>
+<!--
+      <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+        <properties>
+          <property key="textMetaFields" value="cuePhraseCategory"/>
+          <property key="maxPermutationLevel" value="7"/>
+          <!- -  <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> - ->
+          <!- -  org.apache.ctakes.typesystem.type.syntax.Chunk - ->
+          <!- -  org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation - ->
+          <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.syntax.Chunk"/>  
+          <!- -  <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/> - ->
+        </properties>
+      </lookupInitializer>
+-->
+      <lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.AssertionCuePhraseConsumerImpl">
+        <properties>
+          <!--
+          <property key="codingScheme" value="RXNORM"/>
+          <property key="codeMetaField" value="code"/>
+          -->
+          <property key="luceneFilterExtResrcKey" value="AssertionCuePhraseIndexReader"/>
+        </properties>
+      </lookupConsumer>
+    </lookupBinding>
+
+	</lookupBindings>
+</lookupSpecification>

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml
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    svn:mime-type = text/plain

Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,103 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<lookupSpecification>
+	<!--  Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+	<dictionaries>
+	
+		<dictionary id="DICT_UMLS_MS" externalResourceKey="UmlsIndexReader" caseSensitive="false">
+			<implementation>
+				<luceneImpl/>
+			</implementation>
+			<lookupField fieldName="first_word"/>
+			<metaFields>
+				<metaField fieldName="cui"/>
+				<metaField fieldName="tui"/>
+				<metaField fieldName="text"/>
+			</metaFields>
+		</dictionary>
+	
+		<dictionary id="DICT_RXNORM" externalResourceKey="RxnormIndexReader" caseSensitive="false">
+			<implementation>
+				<luceneImpl/>
+			</implementation>
+			<lookupField fieldName="first_word"/>
+			<metaFields>
+				<metaField fieldName="code"/>
+				<metaField fieldName="preferred_designation"/>
+				<metaField fieldName="other_designation"/>
+			</metaFields>
+		</dictionary>
+	
+	</dictionaries>
+	<!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+	<lookupBindings>
+	
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_UMLS_MS"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="text"/>
+					<property key="maxPermutationLevel" value="5"/>
+					<!--	<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>  
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,PRP,PRP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedLuceneConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="SNOMED"/>
+					<property key="cuiMetaField" value="cui"/>
+					<property key="tuiMetaField" value="tui"/>
+					<property key="cuiMappingField" value="cui"/>
+					<property key="snomedCodeMappingField" value="code"/>
+					<!-- the following values are used as TUIs for testing: T_AS, T_PR, T_DD, T_SS -->
+					<property key="anatomicalSiteTuis" value="T021,T022,T023,T024,T025,T026,T029,T030,T_AS"/>
+					<property key="procedureTuis" value="T059,T060,T061,T_PR"/>
+					<property key="disorderTuis" value="T019,T020,T037,T046,T047,T048,T049,T050,T190,T191,T_DD"/>
+					<property key="findingTuis" value="T033,T034,T040,T041,T042,T043,T044,T045,T046,T056,T057,T184,T_SS"/>
+					<property key="luceneFilterExtResrcKey" value="UmlsIndexReader"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+	
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_RXNORM"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="preferred_designation|other_designation"/>
+					<property key="maxPermutationLevel" value="7"/>
+					<!--	<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>  
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="RXNORM"/>
+					<property key="codeMetaField" value="code"/>
+					<property key="luceneFilterExtResrcKey" value="OrangeBookIndexReader"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+		
+	</lookupBindings>
+</lookupSpecification>

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml
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    svn:mime-type = text/plain

Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,102 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<lookupSpecification>
+	<!--  Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+	<dictionaries>
+	
+		<dictionary id="DICT_UMLS_MS" externalResourceKey="DbConnection" caseSensitive="false">
+			<implementation>
+				<jdbcImpl tableName="umls_ms_2011ab"/>
+			</implementation>
+			<lookupField fieldName="fword"/>
+			<metaFields>
+				<metaField fieldName="cui"/>
+				<metaField fieldName="tui"/>
+				<metaField fieldName="text"/>
+			</metaFields>
+		</dictionary>
+	
+		<dictionary id="DICT_RXNORM" externalResourceKey="RxnormIndexReader" caseSensitive="false">
+			<implementation>
+				<luceneImpl/>
+			</implementation>
+			<lookupField fieldName="first_word"/>
+			<metaFields>
+				<metaField fieldName="code"/>
+				<metaField fieldName="codeRxNorm"/>
+				<metaField fieldName="preferred_designation"/>
+				<metaField fieldName="other_designation"/>
+			</metaFields>
+		</dictionary>
+	
+	</dictionaries>
+	<!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+	<lookupBindings>
+	
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_UMLS_MS"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="text"/>
+					<property key="maxPermutationLevel" value="7"/>
+					<!--	<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>  
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,IN,LS,MD,PDT,POS,PP,PP$,PRP,PRP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedDbConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="SNOMED"/>
+					<property key="cuiMetaField" value="cui"/>
+					<property key="tuiMetaField" value="tui"/>
+					<property key="anatomicalSiteTuis" value="T021,T022,T023,T024,T025,T026,T029,T030"/>
+					<property key="procedureTuis" value="T059,T060,T061"/>
+					<property key="disorderTuis" value="T019,T020,T037,T046,T047,T048,T049,T050,T190,T191"/>
+					<property key="findingTuis" value="T033,T034,T040,T041,T042,T043,T044,T045,T046,T056,T057,T184"/>
+					<property key="dbConnExtResrcKey" value="DbConnection"/>
+					<property key="mapPrepStmt" value="select code from umls_snomed_map where cui=?"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+	
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_RXNORM"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="preferred_designation|other_designation"/>
+					<property key="maxPermutationLevel" value="7"/>
+					<!--	<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>  
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="RXNORM"/>
+					<property key="codeMetaField" value="codeRxNorm"/> <!-- Use value="code" for UMLS CUIs -->
+					<property key="luceneFilterExtResrcKey" value="OrangeBookIndexReader"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+		
+	</lookupBindings>
+</lookupSpecification>

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml
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    svn:mime-type = text/plain

Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,81 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<lookupSpecification>
+	<!--  Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+	<dictionaries>
+		<dictionary id="DICT_CSV_SAMPLE" externalResourceKey="DictionaryFile" caseSensitive="false">
+			<implementation>
+				<csvImpl delimiter="|" indexedFieldNames="0,1"/>
+			</implementation>
+			<lookupField fieldName="0"/>
+			<metaFields>
+				<metaField fieldName="1"/>
+			</metaFields>
+		</dictionary>
+		<dictionary id="DICT_RXNORM" externalResourceKey="RxnormIndexReader" caseSensitive="false">
+			<implementation>
+				<luceneImpl/>
+			</implementation>
+			<lookupField fieldName="first_word"/>
+			<metaFields>
+				<metaField fieldName="code"/>
+				<metaField fieldName="preferred_designation"/>
+				<metaField fieldName="other_designation"/>
+			</metaFields>
+		</dictionary>
+	</dictionaries>
+	<!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+	<lookupBindings>
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_CSV_SAMPLE"/>
+
+<!-- NOTE: Only use if windowAnnotations have small # of tokens, sentences are not a good idea! -->
+
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl">
+				<properties>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.NamedEntityLookupConsumerImpl">
+				<properties>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_RXNORM"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="preferred_designation|other_designation"/>
+					<property key="maxPermutationLevel" value="7"/>
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="RXNORM"/>
+					<property key="codeMetaField" value="code"/>
+					<property key="luceneFilterExtResrcKey" value="OrangeBookIndexReader"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+	</lookupBindings>
+</lookupSpecification>

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--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_example_using_CSV.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_example_using_CSV.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,52 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<lookupSpecification>
+	<!--  Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+	<dictionaries>
+		<dictionary id="DICT_CSV_SAMPLE" externalResourceKey="CSV_FILE" caseSensitive="false">
+			<implementation>
+				<csvImpl delimiter="|" indexedFieldNames="0,1"/>
+			</implementation>
+			<lookupField fieldName="0"/>
+			<metaFields>
+				<metaField fieldName="1"/>
+			</metaFields>
+		</dictionary>
+	</dictionaries>
+	<!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+	<lookupBindings>
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_CSV_SAMPLE"/>
+
+<!-- NOTE: Only use if windowAnnotations have small # of tokens, sentences are not a good idea! -->
+
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl">
+				<properties>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.DebugConsumerImpl">
+				<properties>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+	</lookupBindings>
+</lookupSpecification>

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+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/dictionary1.csv Fri Apr 18 19:47:21 2014
@@ -0,0 +1,16 @@
+ankle|ankle
+aspirin|aspirin
+cm|cm 
+cm|cm is a synonym of a UMLS term Cutaneous Mastocytosis which is in SNOMED but cm is not by itself
+hyperlipidemia|hyperlipidemia
+knee|knee
+knee|knee pain
+ld|ld
+ld|ld SNOMED procedure C0011911
+medical|medical nutrition therapy
+nutrition|nutrition
+nutrition|nutrition therapy
+pain|pain
+pain|pain, chronic
+weight|weight gain
+

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