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From chen...@apache.org
Subject svn commit: r1588552 [10/42] - in /ctakes/sandbox/ctakes-web-client: ./ .settings/ WebContent/ WebContent/META-INF/ WebContent/WEB-INF/ WebContent/WEB-INF/lib/ src/ src/main/ src/main/java/ src/main/java/org/ src/main/java/org/apache/ src/main/java/org...
Date Fri, 18 Apr 2014 19:48:35 GMT
Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/models/uncertainty.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/allergy.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/allergy.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/allergy.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/allergy.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,6 @@
+allergic
+allergies
+allergy
+intolerance
+intolerances
+intolerant

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/allergy.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/association.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/association.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/association.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/association.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,14 @@
+association with
+associated with
+related to
+relationship to
+represent
+correlate with
+correlated with
+correlating with
+correlates with
+correlation with
+connection with
+connection to
+connected with
+connected to
\ No newline at end of file

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/association.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/avoid.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/avoid.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/avoid.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/avoid.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,7 @@
+avoidance
+avoid
+avoiding
+prevent
+preventing
+prevention
+prophylaxis against

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/avoid.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/cause.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/cause.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/cause.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/cause.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,41 @@
+attributable
+attribute
+attributed
+attributes
+attributing
+because
+cause 
+caused
+causes
+causing
+due to
+d/t
+etiology of
+explain
+explained
+explains
+explaining
+explanation of 
+give
+gives
+induce
+induced
+induces
+inducing
+lead to
+leads to
+leading to
+led to
+precipitate
+precipitated
+precipitates
+precipitating
+reason
+result in
+resulted in
+resulting in
+results in
+secondary to
+source of
+
+

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/cause.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/certainty.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/certainty.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/certainty.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/certainty.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,12 @@
+certain
+certainly
+certainty
+confirmed
+definite
+definitely
+know
+knowledge
+necessarily
+necessary
+positive
+sure

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/certainty.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/change_state.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/change_state.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/change_state.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/change_state.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,33 @@
+better
+change
+changed
+changes
+changing
+decrease
+decreased
+decreases
+decreasing
+diminish
+diminished
+diminishes
+diminishing
+enhance
+enhanced
+enhances
+enhancing
+enhancement
+improve
+improved
+improves
+improving
+improvement
+improvements
+increase
+increased
+increases
+increasing
+remission
+worsen
+worsened
+worsening
+worsens
\ No newline at end of file

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/change_state.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/continue.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/continue.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/continue.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/continue.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,14 @@
+continuation
+continue
+continued
+continuing
+continues
+persist
+persisted
+persistent
+persisting
+persists
+remain
+remained
+remaining
+remains

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/continue.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/copular.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/copular.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/copular.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/copular.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,16 @@
+am
+are
+be
+became
+become
+becomes
+becoming
+been
+being
+is
+remain
+remained
+remaining
+remains
+was
+were
\ No newline at end of file

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/copular.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/decline.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/decline.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/decline.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/decline.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,13 @@
+unwilling
+unwillingness
+reluctance
+reluctant
+decline
+declined 
+declines 
+declining
+refusal
+refuse
+refused
+refuses
+refusing

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/decline.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/def_determiner.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/def_determiner.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/def_determiner.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/def_determiner.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,5 @@
+her
+his
+patient's
+your
+this
\ No newline at end of file

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/def_determiner.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/deny.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/deny.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/deny.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/deny.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,5 @@
+deny
+denies
+denied
+denying
+denial

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/deny.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/disappear.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/disappear.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/disappear.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/disappear.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,18 @@
+clear
+cleared
+clearing
+clears
+disappear
+disappeared
+disappearing
+disappears
+disappearance
+resolve
+resolved
+resolves
+resolving
+resolution
+subside
+subsided
+subsides
+subsiding
\ No newline at end of file

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/disappear.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/evidence.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/evidence.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/evidence.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/evidence.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,43 @@
+appreciate
+appreciated
+appreciates
+appreciating
+demonstrate
+demonstrated
+demonstrates
+demonstrating
+evidence
+exhibit
+exhibited
+exhibiting
+exhibits
+finding
+findings
+indicate
+indicated
+indicates
+indicating
+indication
+indications
+indicative
+proof
+reveal
+revealed
+revealing
+reveals
+suggestion
+suggestive 
+suggest
+suggested
+suggesting
+suggests
+sign
+signs
+show
+showed
+showing
+shown
+shows
+symptom
+symptoms
+

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/evidence.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/exception.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/exception.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/exception.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/exception.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,11 @@
+rather than 
+instead of 
+except
+excepting
+exception
+besides
+aside from
+other than
+
+
+

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/exception.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/experience.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/experience.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/experience.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/experience.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,17 @@
+develop
+developed
+developing
+develops
+development
+experience
+experienced
+experiences
+experiencing
+feel
+feeling
+feels
+felt
+had
+has
+have
+having
\ No newline at end of file

Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/experience.txt
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/fail.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/fail.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/fail.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/fail.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,13 @@
+impossible 
+cannot
+inability
+unable
+forget
+forgets
+forgetting
+forgot
+fail
+failed
+failing
+fails
+failure
\ No newline at end of file

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/history.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/history.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/history.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/history.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,3 @@
+history
+hx
+h/o
\ No newline at end of file

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/hypothetical_cue_list.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/hypothetical_cue_list.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/hypothetical_cue_list.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/hypothetical_cue_list.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,51 @@
+as needed for
+as necessary for
+avoid
+avoiding
+avoidance
+call for
+call with
+chance of
+chance for
+future
+if
+immunization against
+instructions for
+look for
+looked for
+looking for
+looks for
+monitor for
+monitored for
+monitoring for
+monitors for
+potential
+potentially
+prevent
+preventing
+prevention
+prn
+PRN
+p.r.n.
+P.R.N.
+prognosis for
+prophylaxis
+prophylactic
+return for
+return with
+return
+report new
+risk of 
+risk for
+risk from
+risk stratification for
+should
+should he experience
+should she experience
+should the patient experience
+watch for
+watch her for
+watch him for
+watch patient for
+would
+unless
\ No newline at end of file

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/instance.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/instance.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/instance.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/instance.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,6 @@
+episode
+episodes
+instance
+instances
+case
+cases
\ No newline at end of file

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/stop.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/stop.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/stop.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/stop.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,63 @@
+discontinuance
+discontinuation
+discontinue
+discontinued
+discontinues
+discontinuing
+elimination
+eliminate
+eliminated
+eliminates
+eliminating
+eradication
+eradicate
+eradicated
+eradicates
+eradicating
+held
+hold
+holding
+holds
+interrupt
+interrupted
+interrupting
+interrupts
+interruption
+interruptions
+on hold
+off
+purge
+purged
+purges
+purging
+quit
+quits
+quitting
+removal
+remove
+removed
+removes
+removing
+repair
+repaired
+repairs
+repairing
+relief
+relieve
+relieved
+relieves
+relieving
+rid
+stop
+stopped
+stopping
+stops
+terminate
+terminated
+terminates
+terminating
+used to 
+wipe out
+wiped out
+wipes out
+wiping out

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/uncertainty.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/uncertainty.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/uncertainty.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/semantic_classes/uncertainty.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,167 @@
+uncertain
+unsure
+improbable
+unlikely
+poss
+possible
+hypothetical
+questionable
+compatible with
+consistent
+potential
+suspicious for
+equivocal for
+concerning for
+worrisome for
+unclear
+unknown
+possibly
+seemingly
+potentially
+maybe
+perhaps
+concern for
+concerns for
+possibilities
+possibility
+question
+questioned
+questioning
+questions
+speculation
+?
+differential diagnosis
+differential diagnoses
+believe
+believed
+believes
+believing
+consider
+considered
+considering
+considers
+postulate
+postulated
+postulating
+postulates
+speculate
+speculated
+speculates
+speculating
+can
+could
+may
+might
+whether or not
+whether
+either
+if
+versus
+vs
+v.s.
+probable
+likely
+presumed
+presumptive
+apparent
+preliminary
+putative
+suggestive of
+typical of
+probably
+likely
+presumably
+apparently
+reportedly
+supposedly
+must
+appear
+appeared
+appearing
+appears
+seem
+seemed
+seems
+seeming
+estimate
+estimated
+estimates
+estimating
+feel that
+feeling that
+feels that
+felt that
+hypothesize
+hypothesized
+hypothesizes
+hypothesizing
+implied
+implies
+imply
+implying
+propose
+proposed
+proposes
+proposing
+speculate
+speculated
+speculates
+speculating
+suggest
+suggested
+suggesting
+suggests
+support
+supported
+supporting
+supports
+suppose
+supposed
+supposes
+supposing
+suspect
+suspected
+suspecting
+suspects
+think
+thinks
+thinking
+thought
+implication
+implications
+indication of
+indications of
+probabilities of
+probability of
+speculation
+suspicion
+suspicions
+suggestion
+suggestions
+hypothesis
+hypotheses
+r/o
+ro
+r / o
+rule out
+ruling out
+assess for
+assessment for
+test for
+tested for
+testing for
+tests for
+check for
+checked for
+checking for
+checks for
+eval for
+evaluate for
+evaluated for
+evaluates for
+evaluating for
+evaluation for
+seriologies for
+seriology for
+work up for
+workup for

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/types/TypeSystem.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/types/TypeSystem.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/types/TypeSystem.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/types/TypeSystem.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,73 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
+  <name>org.apache.ctakes.assertion.types.TypeSystem</name>
+  <description/>
+  <version>1.0</version>
+  <vendor/>
+  <types>
+    <typeDescription>
+      <name>org.apache.ctakes.assertion.medfacts.types.Concept</name>
+      <description/>
+      <supertypeName>uima.tcas.Annotation</supertypeName>
+      <features>
+        <featureDescription>
+          <name>conceptType</name>
+          <description>the concept type -- one of problem, treatment, or test</description>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>conceptText</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>externalId</name>
+          <description/>
+          <rangeTypeName>uima.cas.Integer</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>originalEntityExternalId</name>
+          <description/>
+          <rangeTypeName>uima.cas.Integer</rangeTypeName>
+        </featureDescription>
+      </features>
+    </typeDescription>
+    <typeDescription>
+      <name>org.apache.ctakes.assertion.medfacts.types.Assertion</name>
+      <description/>
+      <supertypeName>uima.tcas.Annotation</supertypeName>
+      <features>
+        <featureDescription>
+          <name>assertionType</name>
+          <description>assertion type -- one of present, absent, possible, conditional, hypothetical, or assocated_with_someone_else</description>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>associatedConcept</name>
+          <description/>
+          <rangeTypeName>org.apache.ctakes.assertion.medfacts.types.Concept</rangeTypeName>
+        </featureDescription>
+      </features>
+    </typeDescription>
+  </types>
+</typeSystemDescription>

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/zoner/types/TypeSystem.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/zoner/types/TypeSystem.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/zoner/types/TypeSystem.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/assertion/zoner/types/TypeSystem.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,66 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
+  <name>org.apache.ctakes.assertion.types.TypeSystem</name>
+  <description/>
+  <version>1.0</version>
+  <vendor/>
+  <types>
+    <typeDescription>
+      <name>org.apache.ctakes.assertion.zoner.types.Heading</name>
+      <description>a section heading</description>
+      <supertypeName>uima.tcas.Annotation</supertypeName>
+      <features>
+        <featureDescription>
+          <name>label</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+      </features>
+    </typeDescription>
+    <typeDescription>
+      <name>org.apache.ctakes.assertion.zoner.types.Zone</name>
+      <description>A document Zone, including its heading</description>
+      <supertypeName>uima.tcas.Annotation</supertypeName>
+      <features>
+        <featureDescription>
+          <name>label</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+      </features>
+    </typeDescription>
+    <typeDescription>
+      <name>org.apache.ctakes.assertion.zoner.types.Subzone</name>
+      <description/>
+      <supertypeName>uima.tcas.Annotation</supertypeName>
+      <features>
+        <featureDescription>
+          <name>label</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+      </features>
+    </typeDescription>
+  </types>
+</typeSystemDescription>
+

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/chunker/models/README
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/chunker/models/README?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/chunker/models/README (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/chunker/models/README Fri Apr 18 19:47:21 2014
@@ -0,0 +1,24 @@
+
+A chunker model is included with this project.
+
+The model derives from a combination of GENIA, Penn Treebank (Wall Street Journal) and anonymized
+clinical data per Safe Harbor HIPAA guidelines. Prior to model building, the clinical data was 
+deidentified for patient names to preserve patient confidentiality. Any person name in the model 
+will originate from non-patient data sources.
+
+To build a model of your own, you need to
+1) obtain training data - see data/chunk/genia/README and data/chunk/ptb/README
+2) build a model using the training data. 
+
+After you have obtained training data, you can build a chunker model by running the following:
+
+java opennlp.tools.chunker.ChunkerME <training-data> <model-name> <iterations> <cutoff>
+where <training-data> is an OpenNLP training data file as described in e.g. data/chunk/genia/README
+      <model-name> The file name of the resulting model.  The name should end with either '.txt' 
+                  (for a plain text model) or '.bin.gz' (for a compressed binary model).  
+      <iterations> How many training iterations will be performed.  The default is 100.  
+      <cutoff>     The minimum number of times a feature has to be seen to be considered for 
+	               inclusion in the model.  The default cutoff is 5.
+	  
+The arguments <iterations> and <cutoff> are, taken together, optional - i.e. you should provide 
+both or provide neither.  

Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/chunker/models/chunker-model.zip
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/chunker/models/chunker-model.zip?rev=1588552&view=auto
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URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/constituency/parser/models/sharpacq-1.5.bin?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/constituency/parser/models/sharpacq-3.1.bin
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/constituency/parser/models/sharpacq-3.1.bin?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,46 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
+  <name>org.apache.ctakes.constituency.parser.types.LabeledTree</name>
+  <description/>
+  <version>1.0</version>
+  <vendor/>
+  <types>
+    <typeDescription>
+      <name>org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree</name>
+      <description/>
+      <supertypeName>uima.tcas.Annotation</supertypeName>
+      <features>
+        <featureDescription>
+          <name>label</name>
+          <description/>
+          <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+        </featureDescription>
+        <featureDescription>
+          <name>tree</name>
+          <description/>
+          <rangeTypeName>uima.cas.String</rangeTypeName>
+        </featureDescription>
+      </features>
+    </typeDescription>
+  </types>
+</typeSystemDescription>

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/cc/jdbc/TestBinding.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/cc/jdbc/TestBinding.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/cc/jdbc/TestBinding.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/cc/jdbc/TestBinding.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,58 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<root>
+	<preparedStatements>
+		<preparedStatement id="TEST_QUERY_PREP_STMT" sql="select count(*) as MYCOUNT from TXTPH3.JDBC_CC_TEST"/>
+		<preparedStatement id="TEST_INSERT_PREP_STMT" sql="insert into TXTPH3.JDBC_CC_TEST (C1, C2, C3,C4) values (?,?,?,?)"/>
+	</preparedStatements>
+	<executionFlow>
+		<query idref="TEST_QUERY_PREP_STMT">
+			<paramBindings/>
+			<resultSetBindings>
+				<binding>
+					<variable id="MYCOUNT" scope="GLOBAL"/>
+					<prepStmtResult column="MYCOUNT" dataType="INTEGER"/>
+				</binding>
+			</resultSetBindings>
+		</query>
+		<insert idref="TEST_INSERT_PREP_STMT" batchUpdate="TRUE">
+			<paramBindings>
+				<binding>
+					<prepStmtParam dataType="DECIMAL"/>
+					<variableRef idref="MYCOUNT" scope="GLOBAL"/>
+				</binding>
+				<binding>
+					<prepStmtParam dataType="INTEGER"/>
+					<variableRef idref="MYCOUNT" scope="GLOBAL"/>
+				</binding>
+				<binding>
+					<prepStmtParam dataType="CLOB"/>
+					<variableRef idref="NORM_DOC_TEXT" scope="GLOBAL"/>
+				</binding>
+				<binding>
+					<prepStmtParam dataType="BLOB"/>
+					<variableRef idref="NORM_DOC_MAP" scope="GLOBAL"/>
+				</binding>
+			</paramBindings>
+		</insert>
+	</executionFlow>
+</root>

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/eclipse/spellingdictionaryforsourcecode.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/eclipse/spellingdictionaryforsourcecode.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/eclipse/spellingdictionaryforsourcecode.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/eclipse/spellingdictionaryforsourcecode.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,27 @@
+annotator
+tagger
+Treebank
+Penn
+config
+hsqldb
+jdbc
+download
+lvg
+edu
+mayo
+Mayo
+bmi
+uima
+UIMA
+apache
+Lvg
+xml
+org
+apache
+tcas
+jcas
+tgz
+chunker
+Chunker
+opennlp
+

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/log4j.properties
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/log4j.properties?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/log4j.properties (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/log4j.properties Fri Apr 18 19:47:21 2014
@@ -0,0 +1,41 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+###############################################################################
+
+log4j.rootLogger=INFO, Console
+
+###############################################################################
+
+# Rolling File Appender definition
+log4j.appender.RFile=org.apache.log4j.RollingFileAppender
+log4j.appender.RFile.File=textAnalysis.log
+log4j.appender.RFile.MaxFileSize=1024KB
+log4j.appender.RFile.MaxBackupIndex=1
+log4j.appender.RFile.layout=org.apache.log4j.PatternLayout
+log4j.appender.RFile.layout.ConversionPattern=%d %-5p %c %x - %m%n
+
+###############################################################################
+
+# Console Appender definition
+log4j.appender.Console=org.apache.log4j.ConsoleAppender
+log4j.appender.Console.layout=org.apache.log4j.PatternLayout
+log4j.appender.Console.layout.ConversionPattern=%d %-5p %c %x - %m%n
+
+###############################################################################
\ No newline at end of file

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/sections/ccda_sections.txt
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/sections/ccda_sections.txt?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/sections/ccda_sections.txt (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/sections/ccda_sections.txt Fri Apr 18 19:47:21 2014
@@ -0,0 +1,45 @@
+# This file is used by ctakes-core/sectionizer
+# It uses rules and RegEx to match the section headers
+# It is derived from the Consolidated CDA/HL7 standard
+# http://bluebuttonplus.org/healthrecords.html
+# http://cdatools.org/infocenter/index.jsp
+# The format is as follows:
+# HL7 template id,LOINC Section Code,n list of header names
+# Custom ones can be added to the below mapping file
+# By Default,they are case insenstive and spaces trimmed. 
+
+2.16.840.1.113883.10.20.22.2.21,42348-3,Advance Directives
+2.16.840.1.113883.10.20.22.2.6.1,48765-2,Allergies,Adverse Reactions,allergy
+2.16.840.1.113883.10.20.22.2.25,59774-0,Anesthesia Section
+2.16.840.1.113883.10.20.22.2.9,51847-2,ASSESSMENT AND PLAN
+2.16.840.1.113883.10.20.22.2.8,51848-0,Assessments 
+2.16.840.1.113883.10.20.22.2.13,46239-0,Chief Complaint and Reason for Visit
+1.3.6.1.4.1.19376.1.5.3.1.1.13.2.1,10154-3,CHIEF COMPLAINT,admit diagnosis,principal discharge diagnosis,principal diagnosis,principal diagnoses,secondary diagnosis,other medical issues considered at this time 
+2.16.840.1.113883.10.20.22.2.37,55109-3,Complications
+1.3.6.1.4.1.19376.1.5.3.1.3.33,42344-2,Discharge Diet
+2.16.840.1.113883.10.20.22.2.22.1,46240-8,Encounters,History of encounters,Surgeries,ED visits
+2.16.840.1.113883.10.20.22.2.15,10157-6,Family History
+2.16.840.1.113883.10.20.22.2.14,47420-5,FUNCTIONAL STATUS,Functional and Cognitive Status,impairments
+2.16.840.1.113883.10.20.2.5,10210-3,GENERAL STATUS,CURRENT HEALTH STATUS
+2.16.840.1.113883.10.20.22.1.1,34133-9,Header,Patient information and demographics,IDENTIFYING DATA,identification,record
+2.16.840.1.113883.10.20.22.2.20,11348-0,HISTORY OF PAST ILLNESS,PAST MEDICAL HISTORY
+1.3.6.1.4.1.19376.1.5.3.1.3.4,10164-2,HISTORY OF PRESENT ILLNESS,brief history of physical illness,history of present illness,history of the present illness
+2.16.840.1.113883.10.20.22.2.2.1,11369-6,History of immunizations,Immunizations,Immunizations and vaccines
+2.16.840.1.113883.10.20.22.2.1.1,10160-0,HISTORY OF MEDICATION USE,Medications,current medications
+2.16.840.1.113883.10.20.22.2.43,46241-6,HOSPITAL ADMISSION DX,rx on admit
+2.16.840.1.113883.10.20.22.2.41,8653-8,HOSPITAL DISCHARGE INSTRUCTIONS,Discharge Instructions,	Written discharge instructions
+2.16.840.1.113883.10.20.22.2.24,11535-2,Hospital Discharge Diagnosis,discharge diagnosis,FINAL DIAGNOSIS
+2.16.840.1.113883.10.20.22.2.16,11493-4,Hospital Discharge Studies Summary
+2.16.840.1.113883.10.20.22.2.45,69730-0,Instructions 
+2.16.840.1.113883.10.20.22.2.10,18776-5,Treatment plan,Care Plan
+2.16.840.1.113883.10.20.22.2.11.1,10183-2,HOSPITAL DISCHARGE MEDICATIONS,Discharge Medications
+1.3.6.1.4.1.19376.1.5.3.1.3.1,42349-1,Reason for Referral
+2.16.840.1.113883.10.20.7.12,10216-0,Operative Note Fluids 
+2.16.840.1.113883.10.20.7.14,10223-6,Operative Note Surgical  
+2.16.840.1.113883.10.20.2.10,29545-1,PHYSICAL EXAMINATION,physical exam
+2.16.840.1.113883.10.20.22.2.18,48768-6,Payers 
+2.16.840.1.113883.10.20.22.2.5.1,11450-4,PROBLEMS,Problem List,Concerns,complaints,observations
+2.16.840.1.113883.10.20.22.2.7.1,47519-4,Procedures,	History of procedures
+2.16.840.1.113883.10.20.22.2.3.1,30954-2,Results,laboratory tests,LABORATORY INFORMATION,laboratory data,laboratories
+2.16.840.1.113883.10.20.22.2.17,29762-2,Social History,Observations like smoking,drinking
+2.16.840.1.113883.10.20.22.2.4.1,8716-3,Vital Signs
\ No newline at end of file

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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/sentdetect/README
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/sentdetect/README?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/sentdetect/README (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/core/sentdetect/README Fri Apr 18 19:47:21 2014
@@ -0,0 +1,110 @@
+Contents:
+- Included sentence detector model 
+- Training a sentence detector model from the included sample data  
+- Training a sentence detector model from other training data  
+- Verifying you can train a sentence detector model successfully          
+- FYI - Using opennlp directly
+- Running the SentenceDetectorAnnotator analysis engine
+	- SentenceDetectorAggregate.xml
+	- SentenceDetectorCPE.xml
+	- SentenceDetectorAnnotator.xml
+
+
+################################################################
+Included sentence detector model  
+################################################################
+A sentence detector model is included with this project.
+
+The model derives from a combination of GENIA, Penn Treebank (Wall Street Journal) and anonymized
+clinical data per Safe Harbor HIPAA guidelines. Prior to model building, the clinical data was 
+deidentified for patient names to preserve patient confidentiality. Any person name in the model 
+will originate from non-patient data sources.
+
+
+################################################################
+Training a sentence detector model from the included sample data  
+################################################################
+   
+To train a sentence detector that recognizes the same set of candidate
+end-of-sentence characters that the SentenceDetectorAnnotator uses, 
+using the included sample training sentences, use the included launch 
+called "SentenceDetector - train a new model", or use:
+  java org.apache.ctakes.core.ae.SentenceDetector 
+        data/test/sample_sd_training_sentences.txt 
+        resources/sentdetect/sample_sd.mod
+        
+
+###########################################################
+Training a sentence detector model from other training data 
+###########################################################
+
+To train a sentence detector that recognizes the same set of candidate
+end-of-sentence characters that the SentenceDetectorAnnotator uses, 
+on the Run dialog within eclipse, set the Program arguments on the Arguments 
+tab (the first argument is your sentences training data file) for the 
+included launch called "SentenceDetector - train a new model".
+
+The first argument is your sentences training data file
+The second argument is the name of the model file to be created
+The third argument is the number of iterations for training
+The fourth argument is the cutoff value used
+
+An alternative to using the launch is to use:
+  java org.apache.ctakes.core.ae.SentenceDetector sents_file model iters? cut?
+where sents_file contains one sentence per line,
+model is the file that is to be created, 
+and iters and cut are optional parameters.
+
+For example, sents_file could contain the following four lines:
+The boy ran.
+Did the girl run too?
+Yes, she did.
+Where did she go?
+
+
+##############################################################
+Verifying you can train a sentence detector model successfully          
+##############################################################
+
+Train a sentence detector model from the included sample data, as described 
+above.
+Compare the contents of your sentence detector model to the included sample
+sentence detector model.  You might use diff, like this:
+diff  resources/sentdetect/sample_sd.mod   resources/sentdetect/sample_sd_included.mod
+
+        
+############################
+FYI - Using opennlp directly
+############################
+ 
+You can train a sentence detector directly using the opennlp sentence detector 
+(SentenceDetectorME) with the default set of candidate end-of-sentence 
+characters, using 
+  java opennlp.tools.sentdetect.SentenceDetectorME infile outfile (iters cut)?
+where infile contains one sentence per line (new lines separating sentences)  
+For example, infile could contain the following four lines:
+The boy ran.
+Did the girl run too?
+Yes, she did.
+Where did she go?
+
+
+######################################################
+Running the SentenceDetectorAnnotator analysis engine
+######################################################
+
+Launch the "SentenceDetector annotator" run configuration.
+Open CPE SentenceDetectorCPE.xml, which uses the analysis
+engines listed in SentenceDetectorAggregate.xml.
+
+The aggregate analysis engine is defined to read from plain text file(s) in 
+data\test\sample_notes_plaintext
+using the FilesInDirectoryCollectionReader.
+
+Since the sentence annotator processes the text one section at a time, there 
+must be at least one section (segment) annotation for the SentenceDetectorAnnotator
+to add Sentence annotations. 
+Therefore the first analysis engine is the SimpleSegmentAnnotator, which
+creates a single Segment annotation that covers the entire text.
+Then the SentenceDetectorAnnotator analysis engine adds Sentence annotations.
+



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