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From james-mas...@apache.org
Subject svn commit: r1542043 [1/3] - in /ctakes/branches/ctakes-3.1.1: ./ ctakes-assertion-res/ ctakes-assertion-zoner-res/ ctakes-assertion-zoner/ ctakes-assertion/ ctakes-chunker-res/ ctakes-chunker/ ctakes-clinical-pipeline/ ctakes-constituency-parser-res/ ...
Date Thu, 14 Nov 2013 19:57:47 GMT
Author: james-masanz
Date: Thu Nov 14 19:57:46 2013
New Revision: 1542043

URL: http://svn.apache.org/r1542043
Log:
[maven-release-plugin] prepare release ctakes-3.1.1-rc1

Modified:
    ctakes/branches/ctakes-3.1.1/ctakes-assertion-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-assertion-zoner-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-assertion-zoner/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-assertion/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-chunker-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-chunker/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-clinical-pipeline/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-constituency-parser-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-constituency-parser/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-context-tokenizer/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-core-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-core/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-coreference-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-coreference/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-dependency-parser-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-dependency-parser/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-dictionary-lookup-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-dictionary-lookup/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-distribution/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-drug-ner-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-drug-ner/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-examples/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-lvg-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-lvg/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-ne-contexts-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-ne-contexts/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-pad-term-spotter-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-pad-term-spotter/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-pos-tagger-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-pos-tagger/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-preprocessor/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-regression-test/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-relation-extractor-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-relation-extractor/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-side-effect-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-side-effect/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-smoking-status-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-smoking-status/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-template-filler/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-temporal-res/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-temporal/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-type-system/pom.xml
    ctakes/branches/ctakes-3.1.1/ctakes-utils/pom.xml
    ctakes/branches/ctakes-3.1.1/pom.xml

Modified: ctakes/branches/ctakes-3.1.1/ctakes-assertion-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-assertion-res/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-assertion-res/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-assertion-res/pom.xml Thu Nov 14 19:57:46 2013
@@ -24,7 +24,7 @@
   <parent>
     <groupId>org.apache.ctakes</groupId>
     <artifactId>ctakes</artifactId>
-    <version>3.2.0-SNAPSHOT</version>
+    <version>3.1.1</version>
   </parent>
   <artifactId>ctakes-assertion-res</artifactId>
   <name>Apache cTAKES Resources assertion</name>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-assertion-zoner-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-assertion-zoner-res/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-assertion-zoner-res/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-assertion-zoner-res/pom.xml Thu Nov 14 19:57:46 2013
@@ -24,7 +24,7 @@
   <parent>
     <groupId>org.apache.ctakes</groupId>
     <artifactId>ctakes</artifactId>
-    <version>3.2.0-SNAPSHOT</version>
+    <version>3.1.1</version>
   </parent>
   <artifactId>ctakes-assertion-zoner-res</artifactId>
   <name>Apache cTAKES Resources assertion-zoner</name>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-assertion-zoner/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-assertion-zoner/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-assertion-zoner/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-assertion-zoner/pom.xml Thu Nov 14 19:57:46 2013
@@ -1,65 +1,65 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
-    Licensed to the Apache Software Foundation (ASF) under one
-    or more contributor license agreements.  See the NOTICE file
-    distributed with this work for additional information
-    regarding copyright ownership.  The ASF licenses this file
-    to you under the Apache License, Version 2.0 (the
-    "License"); you may not use this file except in compliance
-    with the License.  You may obtain a copy of the License at
-
-      http://www.apache.org/licenses/LICENSE-2.0
-
-    Unless required by applicable law or agreed to in writing,
-    software distributed under the License is distributed on an
-    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    KIND, either express or implied.  See the License for the
-    specific language governing permissions and limitations
-    under the License.
-
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<artifactId>ctakes-assertion-zoner</artifactId>
-	<name>Apache cTAKES Assertion's zoner</name>
-	<parent>
-		<groupId>org.apache.ctakes</groupId>
-		<artifactId>ctakes</artifactId>
-		<version>3.2.0-SNAPSHOT</version>
-	</parent>
-	<dependencies>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-assertion-zoner-res</artifactId>
-		</dependency>	    
-		<dependency>
-			<groupId>net.sf.mastif</groupId>
-			<artifactId>mastif-zoner</artifactId>
-			<version>1.4</version>
-		</dependency>
-		<dependency>
-      <groupId>org.apache.uima</groupId>
-      <artifactId>uimaj-core</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.uimafit</groupId>
-			<artifactId>uimafit</artifactId>
-		</dependency>
-    <dependency>
-      <groupId>org.apache.ctakes</groupId>
-      <artifactId>ctakes-core</artifactId>
-    </dependency>
-	</dependencies>
-	<build>
-		<plugins>
-			<plugin>
-				<groupId>org.cleartk</groupId>
-				<artifactId>jcasgen-maven-plugin</artifactId>
-				<configuration>
-					<typeSystem>src/main/resources/org/apache/ctakes/assertion/zoner/types/TypeSystem.xml</typeSystem>
-				</configuration>
-			</plugin>
-		</plugins>
-	</build>  
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<artifactId>ctakes-assertion-zoner</artifactId>
+	<name>Apache cTAKES Assertion's zoner</name>
+	<parent>
+		<groupId>org.apache.ctakes</groupId>
+		<artifactId>ctakes</artifactId>
+		<version>3.1.1</version>
+	</parent>
+	<dependencies>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-assertion-zoner-res</artifactId>
+		</dependency>	    
+		<dependency>
+			<groupId>net.sf.mastif</groupId>
+			<artifactId>mastif-zoner</artifactId>
+			<version>1.4</version>
+		</dependency>
+		<dependency>
+      <groupId>org.apache.uima</groupId>
+      <artifactId>uimaj-core</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.uimafit</groupId>
+			<artifactId>uimafit</artifactId>
+		</dependency>
+    <dependency>
+      <groupId>org.apache.ctakes</groupId>
+      <artifactId>ctakes-core</artifactId>
+    </dependency>
+	</dependencies>
+	<build>
+		<plugins>
+			<plugin>
+				<groupId>org.cleartk</groupId>
+				<artifactId>jcasgen-maven-plugin</artifactId>
+				<configuration>
+					<typeSystem>src/main/resources/org/apache/ctakes/assertion/zoner/types/TypeSystem.xml</typeSystem>
+				</configuration>
+			</plugin>
+		</plugins>
+	</build>  
+</project>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-assertion/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-assertion/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-assertion/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-assertion/pom.xml Thu Nov 14 19:57:46 2013
@@ -1,239 +1,239 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
-    Licensed to the Apache Software Foundation (ASF) under one
-    or more contributor license agreements.  See the NOTICE file
-    distributed with this work for additional information
-    regarding copyright ownership.  The ASF licenses this file
-    to you under the Apache License, Version 2.0 (the
-    "License"); you may not use this file except in compliance
-    with the License.  You may obtain a copy of the License at
-
-      http://www.apache.org/licenses/LICENSE-2.0
-
-    Unless required by applicable law or agreed to in writing,
-    software distributed under the License is distributed on an
-    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    KIND, either express or implied.  See the License for the
-    specific language governing permissions and limitations
-    under the License.
-
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<artifactId>ctakes-assertion</artifactId>
-	<name>Apache cTAKES Assertion</name>
-	<parent>
-		<groupId>org.apache.ctakes</groupId>
-		<artifactId>ctakes</artifactId>
-		<version>3.2.0-SNAPSHOT</version>
-	</parent>
-	<dependencies>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-assertion-res</artifactId>
-		</dependency>	    
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-assertion-zoner</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-type-system</artifactId>
-		</dependency>
-    <dependency>
-      <groupId>org.apache.ctakes</groupId>
-      <artifactId>ctakes-dictionary-lookup</artifactId>
-    </dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-core</artifactId>
-		</dependency>
-    <dependency>
-      <groupId>org.apache.ctakes</groupId>
-      <artifactId>ctakes-constituency-parser</artifactId>
-    </dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-utils</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-pos-tagger</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-dependency-parser</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.cleartk</groupId>
-			<artifactId>cleartk-ml</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.cleartk</groupId>
-			<artifactId>cleartk-ml-libsvm</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.cleartk</groupId>
-			<artifactId>cleartk-ml-opennlp-maxent</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.cleartk</groupId>
-			<artifactId>cleartk-util</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.cleartk</groupId>
-			<artifactId>cleartk-eval</artifactId>
-		</dependency>			
-		<dependency>
-			<groupId>args4j</groupId>
-			<artifactId>args4j</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>commons-io</groupId>
-			<artifactId>commons-io</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>commons-lang</groupId>
-			<artifactId>commons-lang</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>commons-logging</groupId>
-			<artifactId>commons-logging</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>com.google.guava</groupId>
-			<artifactId>guava</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>commons-cli</groupId>
-			<artifactId>commons-cli</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>com.carrotsearch</groupId>
-			<artifactId>hppc</artifactId>
-		</dependency>
-
-
-		<dependency>
-			<groupId>jdom</groupId>
-			<artifactId>jdom</artifactId>
-		</dependency>
-
-		<dependency>
-			<groupId>junit</groupId>
-			<artifactId>junit</artifactId>
-		</dependency>
-
-				<dependency>
-			<groupId>log4j</groupId>
-			<artifactId>log4j</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.opennlp</groupId>
-			<artifactId>opennlp-maxent</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.opennlp</groupId>
-			<artifactId>opennlp-tools</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.lucene</groupId>
-			<artifactId>lucene-core</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>tw.edu.ntu.csie</groupId>
-			<artifactId>libsvm</artifactId>
-		</dependency>
-
-		<dependency>
-			<groupId>org.springframework</groupId>
-			<artifactId>spring-core</artifactId>
-		</dependency>
-
-		<dependency>
-			<groupId>junit</groupId>
-			<artifactId>junit</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.uimafit</groupId>
-			<artifactId>uimafit</artifactId>
-		</dependency>
-
-		<dependency>
-			<groupId>org.codehaus.jackson</groupId>
-			<artifactId>jackson-core-asl</artifactId>
-			<version>1.5.0</version>
-		</dependency>
-		<dependency>
-			<groupId>org.codehaus.jackson</groupId>
-			<artifactId>jackson-mapper-asl</artifactId>
-			<version>1.5.0</version>
-		</dependency>
-
-		<dependency>
-			<groupId>org.scala-lang</groupId>
-			<artifactId>scala-library</artifactId>
-			<version>2.9.0</version>
-		</dependency>
-		<dependency>
-			<groupId>org.scala-tools.sbinary</groupId>
-			<artifactId>sbinary_2.9.0</artifactId>
-			<version>0.4.0</version>
-		</dependency>
-
-		<!-- Dependencies that still need to be uploaded to Maven Central; when 
-			done, the dependency versions should be moved into the parent pom -->
-		<dependency>
-			<groupId>org.mitre.medfacts</groupId>
-			<artifactId>medfacts-i2b2</artifactId>
-			<version>1.2</version>
-			<scope>system</scope>
-			<systemPath>${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar</systemPath>
-		</dependency>
-		<dependency>
-			<groupId>org.mitre.medfacts</groupId>
-			<artifactId>medfacts-zoner</artifactId>
-			<version>1.1</version>
-			<scope>system</scope>
-			<systemPath>${project.basedir}/lib/med-facts-zoner-1.1.jar</systemPath>
-		</dependency>
-		<dependency>
-			<groupId>org.mitre.jcarafe.core</groupId>
-			<artifactId>jcarafe.core</artifactId>
-			<version>2.9.1</version>
-			<scope>system</scope>
-			<systemPath>${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar</systemPath>
-		</dependency>
-		<dependency>
-			<groupId>org.mitre.jcarafe.ext</groupId>
-			<artifactId>jcarafe.ext</artifactId>
-			<version>2.9.1</version>
-			<scope>system</scope>
-			<systemPath>${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar</systemPath>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-lvg</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-context-tokenizer</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-chunker</artifactId>
-		</dependency>
-	</dependencies>	
-	<build>
-		<plugins>
-			<plugin>
-				<groupId>org.cleartk</groupId>
-				<artifactId>jcasgen-maven-plugin</artifactId>
-				<configuration>
-					<typeSystem>src/main/resources/org/apache/ctakes/assertion/types/TypeSystem.xml</typeSystem>
-				</configuration>
-			</plugin>
-		</plugins>
-	</build>    	
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<artifactId>ctakes-assertion</artifactId>
+	<name>Apache cTAKES Assertion</name>
+	<parent>
+		<groupId>org.apache.ctakes</groupId>
+		<artifactId>ctakes</artifactId>
+		<version>3.1.1</version>
+	</parent>
+	<dependencies>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-assertion-res</artifactId>
+		</dependency>	    
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-assertion-zoner</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-type-system</artifactId>
+		</dependency>
+    <dependency>
+      <groupId>org.apache.ctakes</groupId>
+      <artifactId>ctakes-dictionary-lookup</artifactId>
+    </dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-core</artifactId>
+		</dependency>
+    <dependency>
+      <groupId>org.apache.ctakes</groupId>
+      <artifactId>ctakes-constituency-parser</artifactId>
+    </dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-utils</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-pos-tagger</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-dependency-parser</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.cleartk</groupId>
+			<artifactId>cleartk-ml</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.cleartk</groupId>
+			<artifactId>cleartk-ml-libsvm</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.cleartk</groupId>
+			<artifactId>cleartk-ml-opennlp-maxent</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.cleartk</groupId>
+			<artifactId>cleartk-util</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.cleartk</groupId>
+			<artifactId>cleartk-eval</artifactId>
+		</dependency>			
+		<dependency>
+			<groupId>args4j</groupId>
+			<artifactId>args4j</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>commons-io</groupId>
+			<artifactId>commons-io</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>commons-lang</groupId>
+			<artifactId>commons-lang</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>commons-logging</groupId>
+			<artifactId>commons-logging</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>com.google.guava</groupId>
+			<artifactId>guava</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>commons-cli</groupId>
+			<artifactId>commons-cli</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>com.carrotsearch</groupId>
+			<artifactId>hppc</artifactId>
+		</dependency>
+
+
+		<dependency>
+			<groupId>jdom</groupId>
+			<artifactId>jdom</artifactId>
+		</dependency>
+
+		<dependency>
+			<groupId>junit</groupId>
+			<artifactId>junit</artifactId>
+		</dependency>
+
+				<dependency>
+			<groupId>log4j</groupId>
+			<artifactId>log4j</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.opennlp</groupId>
+			<artifactId>opennlp-maxent</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.opennlp</groupId>
+			<artifactId>opennlp-tools</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.lucene</groupId>
+			<artifactId>lucene-core</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>tw.edu.ntu.csie</groupId>
+			<artifactId>libsvm</artifactId>
+		</dependency>
+
+		<dependency>
+			<groupId>org.springframework</groupId>
+			<artifactId>spring-core</artifactId>
+		</dependency>
+
+		<dependency>
+			<groupId>junit</groupId>
+			<artifactId>junit</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.uimafit</groupId>
+			<artifactId>uimafit</artifactId>
+		</dependency>
+
+		<dependency>
+			<groupId>org.codehaus.jackson</groupId>
+			<artifactId>jackson-core-asl</artifactId>
+			<version>1.5.0</version>
+		</dependency>
+		<dependency>
+			<groupId>org.codehaus.jackson</groupId>
+			<artifactId>jackson-mapper-asl</artifactId>
+			<version>1.5.0</version>
+		</dependency>
+
+		<dependency>
+			<groupId>org.scala-lang</groupId>
+			<artifactId>scala-library</artifactId>
+			<version>2.9.0</version>
+		</dependency>
+		<dependency>
+			<groupId>org.scala-tools.sbinary</groupId>
+			<artifactId>sbinary_2.9.0</artifactId>
+			<version>0.4.0</version>
+		</dependency>
+
+		<!-- Dependencies that still need to be uploaded to Maven Central; when 
+			done, the dependency versions should be moved into the parent pom -->
+		<dependency>
+			<groupId>org.mitre.medfacts</groupId>
+			<artifactId>medfacts-i2b2</artifactId>
+			<version>1.2</version>
+			<scope>system</scope>
+			<systemPath>${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar</systemPath>
+		</dependency>
+		<dependency>
+			<groupId>org.mitre.medfacts</groupId>
+			<artifactId>medfacts-zoner</artifactId>
+			<version>1.1</version>
+			<scope>system</scope>
+			<systemPath>${project.basedir}/lib/med-facts-zoner-1.1.jar</systemPath>
+		</dependency>
+		<dependency>
+			<groupId>org.mitre.jcarafe.core</groupId>
+			<artifactId>jcarafe.core</artifactId>
+			<version>2.9.1</version>
+			<scope>system</scope>
+			<systemPath>${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar</systemPath>
+		</dependency>
+		<dependency>
+			<groupId>org.mitre.jcarafe.ext</groupId>
+			<artifactId>jcarafe.ext</artifactId>
+			<version>2.9.1</version>
+			<scope>system</scope>
+			<systemPath>${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar</systemPath>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-lvg</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-context-tokenizer</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-chunker</artifactId>
+		</dependency>
+	</dependencies>	
+	<build>
+		<plugins>
+			<plugin>
+				<groupId>org.cleartk</groupId>
+				<artifactId>jcasgen-maven-plugin</artifactId>
+				<configuration>
+					<typeSystem>src/main/resources/org/apache/ctakes/assertion/types/TypeSystem.xml</typeSystem>
+				</configuration>
+			</plugin>
+		</plugins>
+	</build>    	
+</project>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-chunker-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-chunker-res/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-chunker-res/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-chunker-res/pom.xml Thu Nov 14 19:57:46 2013
@@ -24,7 +24,7 @@
   <parent>
     <groupId>org.apache.ctakes</groupId>
     <artifactId>ctakes</artifactId>
-    <version>3.2.0-SNAPSHOT</version>
+    <version>3.1.1</version>
   </parent>
   <artifactId>ctakes-chunker-res</artifactId>
   <name>Apache cTAKES Resources ctakes-chunker-res</name>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-chunker/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-chunker/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-chunker/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-chunker/pom.xml Thu Nov 14 19:57:46 2013
@@ -1,69 +1,69 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
-    Licensed to the Apache Software Foundation (ASF) under one
-    or more contributor license agreements.  See the NOTICE file
-    distributed with this work for additional information
-    regarding copyright ownership.  The ASF licenses this file
-    to you under the Apache License, Version 2.0 (the
-    "License"); you may not use this file except in compliance
-    with the License.  You may obtain a copy of the License at
-
-      http://www.apache.org/licenses/LICENSE-2.0
-
-    Unless required by applicable law or agreed to in writing,
-    software distributed under the License is distributed on an
-    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    KIND, either express or implied.  See the License for the
-    specific language governing permissions and limitations
-    under the License.
-
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<artifactId>ctakes-chunker</artifactId>
-	<name>Apache cTAKES chunker</name>
-	<parent>
-		<groupId>org.apache.ctakes</groupId>
-		<artifactId>ctakes</artifactId>
-		<version>3.2.0-SNAPSHOT</version>
-	</parent>
-	<dependencies>
-      	<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-chunker-res</artifactId>
-		</dependency>		      
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-type-system</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-core</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-utils</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-pos-tagger</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>log4j</groupId>
-			<artifactId>log4j</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.opennlp</groupId>
-			<artifactId>opennlp-maxent</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.opennlp</groupId>
-			<artifactId>opennlp-tools</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>junit</groupId>
-			<artifactId>junit</artifactId>
-		</dependency>
-	</dependencies>
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<artifactId>ctakes-chunker</artifactId>
+	<name>Apache cTAKES chunker</name>
+	<parent>
+		<groupId>org.apache.ctakes</groupId>
+		<artifactId>ctakes</artifactId>
+		<version>3.1.1</version>
+	</parent>
+	<dependencies>
+      	<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-chunker-res</artifactId>
+		</dependency>		      
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-type-system</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-core</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-utils</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-pos-tagger</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>log4j</groupId>
+			<artifactId>log4j</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.opennlp</groupId>
+			<artifactId>opennlp-maxent</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.opennlp</groupId>
+			<artifactId>opennlp-tools</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>junit</groupId>
+			<artifactId>junit</artifactId>
+		</dependency>
+	</dependencies>
+</project>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-clinical-pipeline/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-clinical-pipeline/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-clinical-pipeline/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-clinical-pipeline/pom.xml Thu Nov 14 19:57:46 2013
@@ -1,234 +1,234 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<artifactId>ctakes-clinical-pipeline</artifactId>
-	<name>Apache cTAKES ctakes-clinical-pipeline</name>
-	<parent>
-		<groupId>org.apache.ctakes</groupId>
-		<artifactId>ctakes</artifactId>
-		<version>3.2.0-SNAPSHOT</version>
-	</parent>
-
-
-	<dependencies>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-type-system</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-core</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-utils</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>jdom</groupId>
-			<artifactId>jdom</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>junit</groupId>
-			<artifactId>junit</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-context-tokenizer</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-dictionary-lookup</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-preprocessor</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-lvg</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-chunker</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-ne-contexts</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-pos-tagger</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-assertion</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-dependency-parser</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-dependency-parser-res</artifactId>
-		</dependency>
-	</dependencies>
-	<profiles>
-		<profile>
-			<id>runCPE</id>
-			<activation>
-				<property>
-					<name>runCPE</name>
-				</property>
-			</activation>
-			<build>
-				<plugins>
-					<plugin>
-						<groupId>org.codehaus.mojo</groupId>
-						<artifactId>exec-maven-plugin</artifactId>
-						<version>1.2.1</version>
-						<executions>
-							<execution>
-								<!-- depends on other modules being on classpath -->
-								<phase>compile</phase>
-								<goals>
-									<goal>java</goal>
-								</goals>
-							</execution>
-						</executions>
-						<configuration>
-							<includeProjectDependencies>true</includeProjectDependencies>
-							<includePluginDependencies>true</includePluginDependencies>						
-							<mainClass>org.apache.uima.tools.cpm.CpmFrame</mainClass>
-							<arguments>
-								<argument />
-							</arguments>
-						</configuration>
-						<dependencies>
-							<!-- System lib dependencies is causing a world of pain. Remove these 
-								when they're uploaded to Maven Central -->
-							<dependency>
-								<groupId>org.mitre.medfacts</groupId>
-								<artifactId>medfacts-i2b2</artifactId>
-								<version>1.2</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar</systemPath>
-							</dependency>
-							<dependency>
-								<groupId>org.mitre.medfacts</groupId>
-								<artifactId>medfacts-zoner</artifactId>
-								<version>1.1</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-assertion/lib/med-facts-zoner-1.1.jar</systemPath>
-							</dependency>
-							<dependency>
-								<groupId>org.mitre.jcarafe.core</groupId>
-								<artifactId>jcarafe.core</artifactId>
-								<version>2.9.1</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar</systemPath>
-							</dependency>
-							<dependency>
-								<groupId>org.mitre.jcarafe.ext</groupId>
-								<artifactId>jcarafe.ext</artifactId>
-								<version>2.9.1</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar</systemPath>
-							</dependency>
-							<dependency>
-								<groupId>gov.nih.nlm.nls.lvg</groupId>
-								<artifactId>lvg2010dist</artifactId>
-								<version>0.0.1</version>
-							</dependency>
-						</dependencies>						
-					</plugin>
-				</plugins>
-			</build>
-		</profile>
-
-		<profile>
-			<id>runCVD</id>
-			<activation>
-				<property>
-					<name>runCVD</name>
-				</property>
-			</activation>
-			<build>
-				<plugins>
-					<plugin>
-						<groupId>org.codehaus.mojo</groupId>
-						<artifactId>exec-maven-plugin</artifactId>
-						<version>1.2.1</version>
-						<executions>
-							<execution>
-								<!-- depends on other modules being on classpath -->
-								<phase>compile</phase>
-								<goals>
-									<goal>java</goal>
-								</goals>
-							</execution>
-						</executions>
-						<configuration>
-							<includeProjectDependencies>true</includeProjectDependencies>
-							<includePluginDependencies>true</includePluginDependencies>
-
-							<mainClass>org.apache.uima.tools.cvd.CVD</mainClass>
-							<!-- Have to specify at least one parameter otherwise, CVD thinks 
-								it's an invalid param because MVN passes null when joining to the mvn thread -->
-							<arguments>
-								<argument>-lookandfeel</argument>
-								<argument>javax.swing.plaf.metal.MetalLookAndFeel</argument>
-							</arguments>
-						</configuration>
-						<dependencies>
-							<!-- System lib dependencies is causing a world of pain. Remove these 
-								when they're uploaded to Maven Central -->
-							<dependency>
-								<groupId>org.mitre.medfacts</groupId>
-								<artifactId>medfacts-i2b2</artifactId>
-								<version>1.2</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar</systemPath>
-							</dependency>
-							<dependency>
-								<groupId>org.mitre.medfacts</groupId>
-								<artifactId>medfacts-zoner</artifactId>
-								<version>1.1</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-assertion/lib/med-facts-zoner-1.1.jar</systemPath>
-							</dependency>
-							<dependency>
-								<groupId>org.mitre.jcarafe.core</groupId>
-								<artifactId>jcarafe.core</artifactId>
-								<version>2.9.1</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar</systemPath>
-							</dependency>
-							<dependency>
-								<groupId>org.mitre.jcarafe.ext</groupId>
-								<artifactId>jcarafe.ext</artifactId>
-								<version>2.9.1</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar</systemPath>
-							</dependency>
-							<dependency>
-								<groupId>gov.nih.nlm.nls.lvg</groupId>
-								<artifactId>lvg2010dist</artifactId>
-								<version>0.0.1</version>
-							</dependency>
-						</dependencies>
-					</plugin>
-				</plugins>
-			</build>
-		</profile>
-	</profiles>
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
+	license agreements. See the NOTICE file distributed with this work for additional 
+	information regarding copyright ownership. The ASF licenses this file to 
+	you under the Apache License, Version 2.0 (the "License"); you may not use 
+	this file except in compliance with the License. You may obtain a copy of 
+	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
+	by applicable law or agreed to in writing, software distributed under the 
+	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
+	OF ANY KIND, either express or implied. See the License for the specific 
+	language governing permissions and limitations under the License. -->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<artifactId>ctakes-clinical-pipeline</artifactId>
+	<name>Apache cTAKES ctakes-clinical-pipeline</name>
+	<parent>
+		<groupId>org.apache.ctakes</groupId>
+		<artifactId>ctakes</artifactId>
+		<version>3.1.1</version>
+	</parent>
+
+
+	<dependencies>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-type-system</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-core</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-utils</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>jdom</groupId>
+			<artifactId>jdom</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>junit</groupId>
+			<artifactId>junit</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-context-tokenizer</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-dictionary-lookup</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-preprocessor</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-lvg</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-chunker</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-ne-contexts</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-pos-tagger</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-assertion</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-dependency-parser</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-dependency-parser-res</artifactId>
+		</dependency>
+	</dependencies>
+	<profiles>
+		<profile>
+			<id>runCPE</id>
+			<activation>
+				<property>
+					<name>runCPE</name>
+				</property>
+			</activation>
+			<build>
+				<plugins>
+					<plugin>
+						<groupId>org.codehaus.mojo</groupId>
+						<artifactId>exec-maven-plugin</artifactId>
+						<version>1.2.1</version>
+						<executions>
+							<execution>
+								<!-- depends on other modules being on classpath -->
+								<phase>compile</phase>
+								<goals>
+									<goal>java</goal>
+								</goals>
+							</execution>
+						</executions>
+						<configuration>
+							<includeProjectDependencies>true</includeProjectDependencies>
+							<includePluginDependencies>true</includePluginDependencies>						
+							<mainClass>org.apache.uima.tools.cpm.CpmFrame</mainClass>
+							<arguments>
+								<argument />
+							</arguments>
+						</configuration>
+						<dependencies>
+							<!-- System lib dependencies is causing a world of pain. Remove these 
+								when they're uploaded to Maven Central -->
+							<dependency>
+								<groupId>org.mitre.medfacts</groupId>
+								<artifactId>medfacts-i2b2</artifactId>
+								<version>1.2</version>
+								<scope>system</scope>
+								<systemPath>${project.basedir}/../ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar</systemPath>
+							</dependency>
+							<dependency>
+								<groupId>org.mitre.medfacts</groupId>
+								<artifactId>medfacts-zoner</artifactId>
+								<version>1.1</version>
+								<scope>system</scope>
+								<systemPath>${project.basedir}/../ctakes-assertion/lib/med-facts-zoner-1.1.jar</systemPath>
+							</dependency>
+							<dependency>
+								<groupId>org.mitre.jcarafe.core</groupId>
+								<artifactId>jcarafe.core</artifactId>
+								<version>2.9.1</version>
+								<scope>system</scope>
+								<systemPath>${project.basedir}/../ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar</systemPath>
+							</dependency>
+							<dependency>
+								<groupId>org.mitre.jcarafe.ext</groupId>
+								<artifactId>jcarafe.ext</artifactId>
+								<version>2.9.1</version>
+								<scope>system</scope>
+								<systemPath>${project.basedir}/../ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar</systemPath>
+							</dependency>
+							<dependency>
+								<groupId>gov.nih.nlm.nls.lvg</groupId>
+								<artifactId>lvg2010dist</artifactId>
+								<version>0.0.1</version>
+							</dependency>
+						</dependencies>						
+					</plugin>
+				</plugins>
+			</build>
+		</profile>
+
+		<profile>
+			<id>runCVD</id>
+			<activation>
+				<property>
+					<name>runCVD</name>
+				</property>
+			</activation>
+			<build>
+				<plugins>
+					<plugin>
+						<groupId>org.codehaus.mojo</groupId>
+						<artifactId>exec-maven-plugin</artifactId>
+						<version>1.2.1</version>
+						<executions>
+							<execution>
+								<!-- depends on other modules being on classpath -->
+								<phase>compile</phase>
+								<goals>
+									<goal>java</goal>
+								</goals>
+							</execution>
+						</executions>
+						<configuration>
+							<includeProjectDependencies>true</includeProjectDependencies>
+							<includePluginDependencies>true</includePluginDependencies>
+
+							<mainClass>org.apache.uima.tools.cvd.CVD</mainClass>
+							<!-- Have to specify at least one parameter otherwise, CVD thinks 
+								it's an invalid param because MVN passes null when joining to the mvn thread -->
+							<arguments>
+								<argument>-lookandfeel</argument>
+								<argument>javax.swing.plaf.metal.MetalLookAndFeel</argument>
+							</arguments>
+						</configuration>
+						<dependencies>
+							<!-- System lib dependencies is causing a world of pain. Remove these 
+								when they're uploaded to Maven Central -->
+							<dependency>
+								<groupId>org.mitre.medfacts</groupId>
+								<artifactId>medfacts-i2b2</artifactId>
+								<version>1.2</version>
+								<scope>system</scope>
+								<systemPath>${project.basedir}/../ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar</systemPath>
+							</dependency>
+							<dependency>
+								<groupId>org.mitre.medfacts</groupId>
+								<artifactId>medfacts-zoner</artifactId>
+								<version>1.1</version>
+								<scope>system</scope>
+								<systemPath>${project.basedir}/../ctakes-assertion/lib/med-facts-zoner-1.1.jar</systemPath>
+							</dependency>
+							<dependency>
+								<groupId>org.mitre.jcarafe.core</groupId>
+								<artifactId>jcarafe.core</artifactId>
+								<version>2.9.1</version>
+								<scope>system</scope>
+								<systemPath>${project.basedir}/../ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar</systemPath>
+							</dependency>
+							<dependency>
+								<groupId>org.mitre.jcarafe.ext</groupId>
+								<artifactId>jcarafe.ext</artifactId>
+								<version>2.9.1</version>
+								<scope>system</scope>
+								<systemPath>${project.basedir}/../ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar</systemPath>
+							</dependency>
+							<dependency>
+								<groupId>gov.nih.nlm.nls.lvg</groupId>
+								<artifactId>lvg2010dist</artifactId>
+								<version>0.0.1</version>
+							</dependency>
+						</dependencies>
+					</plugin>
+				</plugins>
+			</build>
+		</profile>
+	</profiles>
+</project>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-constituency-parser-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-constituency-parser-res/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-constituency-parser-res/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-constituency-parser-res/pom.xml Thu Nov 14 19:57:46 2013
@@ -24,7 +24,7 @@
   <parent>
     <groupId>org.apache.ctakes</groupId>
     <artifactId>ctakes</artifactId>
-    <version>3.2.0-SNAPSHOT</version>
+    <version>3.1.1</version>
   </parent>
   <artifactId>ctakes-constituency-parser-res</artifactId>
   <name>Apache cTAKES Resources constituency-parser</name>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-constituency-parser/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-constituency-parser/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-constituency-parser/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-constituency-parser/pom.xml Thu Nov 14 19:57:46 2013
@@ -1,76 +1,76 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
-    Licensed to the Apache Software Foundation (ASF) under one
-    or more contributor license agreements.  See the NOTICE file
-    distributed with this work for additional information
-    regarding copyright ownership.  The ASF licenses this file
-    to you under the Apache License, Version 2.0 (the
-    "License"); you may not use this file except in compliance
-    with the License.  You may obtain a copy of the License at
-
-      http://www.apache.org/licenses/LICENSE-2.0
-
-    Unless required by applicable law or agreed to in writing,
-    software distributed under the License is distributed on an
-    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    KIND, either express or implied.  See the License for the
-    specific language governing permissions and limitations
-    under the License.
-
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<artifactId>ctakes-constituency-parser</artifactId>
-	<name>Apache cTAKES Constituency Parser</name>
-	<parent>
-		<groupId>org.apache.ctakes</groupId>
-		<artifactId>ctakes</artifactId>
-		<version>3.2.0-SNAPSHOT</version>
-	</parent>
-	<dependencies> 
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-constituency-parser-res</artifactId>
-		</dependency>	 	    
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-type-system</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-core</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-utils</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.opennlp</groupId>
-			<artifactId>opennlp-tools</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>log4j</groupId>
-			<artifactId>log4j</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>jdom</groupId>
-			<artifactId>jdom</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>junit</groupId>
-			<artifactId>junit</artifactId>
-		</dependency>
-	</dependencies>
-	<build>
-		<plugins>
-			<plugin>
-				<groupId>org.cleartk</groupId>
-				<artifactId>jcasgen-maven-plugin</artifactId>
-				<configuration>
-					<typeSystem>src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml</typeSystem>
-				</configuration>
-			</plugin>
-		</plugins>
-	</build>  	
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<artifactId>ctakes-constituency-parser</artifactId>
+	<name>Apache cTAKES Constituency Parser</name>
+	<parent>
+		<groupId>org.apache.ctakes</groupId>
+		<artifactId>ctakes</artifactId>
+		<version>3.1.1</version>
+	</parent>
+	<dependencies> 
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-constituency-parser-res</artifactId>
+		</dependency>	 	    
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-type-system</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-core</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-utils</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.opennlp</groupId>
+			<artifactId>opennlp-tools</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>log4j</groupId>
+			<artifactId>log4j</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>jdom</groupId>
+			<artifactId>jdom</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>junit</groupId>
+			<artifactId>junit</artifactId>
+		</dependency>
+	</dependencies>
+	<build>
+		<plugins>
+			<plugin>
+				<groupId>org.cleartk</groupId>
+				<artifactId>jcasgen-maven-plugin</artifactId>
+				<configuration>
+					<typeSystem>src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml</typeSystem>
+				</configuration>
+			</plugin>
+		</plugins>
+	</build>  	
+</project>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-context-tokenizer/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-context-tokenizer/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-context-tokenizer/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-context-tokenizer/pom.xml Thu Nov 14 19:57:46 2013
@@ -1,54 +1,54 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
-    Licensed to the Apache Software Foundation (ASF) under one
-    or more contributor license agreements.  See the NOTICE file
-    distributed with this work for additional information
-    regarding copyright ownership.  The ASF licenses this file
-    to you under the Apache License, Version 2.0 (the
-    "License"); you may not use this file except in compliance
-    with the License.  You may obtain a copy of the License at
-
-      http://www.apache.org/licenses/LICENSE-2.0
-
-    Unless required by applicable law or agreed to in writing,
-    software distributed under the License is distributed on an
-    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    KIND, either express or implied.  See the License for the
-    specific language governing permissions and limitations
-    under the License.
-
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<artifactId>ctakes-context-tokenizer</artifactId>
-	<name>Apache cTAKES context dependent tokenizer</name>
-	<parent>
-		<groupId>org.apache.ctakes</groupId>
-		<artifactId>ctakes</artifactId>
-		<version>3.2.0-SNAPSHOT</version>
-	</parent>
-	<dependencies>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-type-system</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-core</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-utils</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>log4j</groupId>
-			<artifactId>log4j</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>junit</groupId>
-			<artifactId>junit</artifactId>
-			<scope>test</scope>
-		</dependency>
-	</dependencies>
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<artifactId>ctakes-context-tokenizer</artifactId>
+	<name>Apache cTAKES context dependent tokenizer</name>
+	<parent>
+		<groupId>org.apache.ctakes</groupId>
+		<artifactId>ctakes</artifactId>
+		<version>3.1.1</version>
+	</parent>
+	<dependencies>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-type-system</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-core</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-utils</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>log4j</groupId>
+			<artifactId>log4j</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>junit</groupId>
+			<artifactId>junit</artifactId>
+			<scope>test</scope>
+		</dependency>
+	</dependencies>
+</project>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-core-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-core-res/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-core-res/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-core-res/pom.xml Thu Nov 14 19:57:46 2013
@@ -24,7 +24,7 @@
   <parent>
     <groupId>org.apache.ctakes</groupId>
     <artifactId>ctakes</artifactId>
-    <version>3.2.0-SNAPSHOT</version>
+    <version>3.1.1</version>
   </parent>
   <artifactId>ctakes-core-res</artifactId>
   <name>Apache cTAKES Resources core</name>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-core/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-core/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-core/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-core/pom.xml Thu Nov 14 19:57:46 2013
@@ -1,104 +1,104 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
-    Licensed to the Apache Software Foundation (ASF) under one
-    or more contributor license agreements.  See the NOTICE file
-    distributed with this work for additional information
-    regarding copyright ownership.  The ASF licenses this file
-    to you under the Apache License, Version 2.0 (the
-    "License"); you may not use this file except in compliance
-    with the License.  You may obtain a copy of the License at
-
-      http://www.apache.org/licenses/LICENSE-2.0
-
-    Unless required by applicable law or agreed to in writing,
-    software distributed under the License is distributed on an
-    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    KIND, either express or implied.  See the License for the
-    specific language governing permissions and limitations
-    under the License.
-
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<artifactId>ctakes-core</artifactId>
-	<name>Apache cTAKES core</name>
-	<parent>
-		<groupId>org.apache.ctakes</groupId>
-		<artifactId>ctakes</artifactId>
-		<version>3.2.0-SNAPSHOT</version>
-	</parent>
-	<dependencies>
-	     <dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-core-res</artifactId>
-		</dependency>		    
-  		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-type-system</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-utils</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.uimafit</groupId>
-			<artifactId>uimafit</artifactId>
-		</dependency>
-		<dependency>
-			<!-- needed for uimafit, but excluded in parent pom -->
-			<groupId>commons-io</groupId>
-			<artifactId>commons-io</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>jdom</groupId>
-			<artifactId>jdom</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.jdom</groupId>
-			<artifactId>jdom2</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>com.google.guava</groupId>
-			<artifactId>guava</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>log4j</groupId>
-			<artifactId>log4j</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.opennlp</groupId>
-			<artifactId>opennlp-maxent</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.opennlp</groupId>
-			<artifactId>opennlp-tools</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.lucene</groupId>
-			<artifactId>lucene-core</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>junit</groupId>
-			<artifactId>junit</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>edu.mit.findstruct</groupId>
-			<artifactId>findstructapi</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>com.googlecode.armbrust-file-utils</groupId>
-			<artifactId>sqlwrapper</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>net.sourceforge.openai</groupId>
-			<artifactId>openaifsm</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.uima</groupId>
-			<artifactId>uimaj-examples</artifactId> <!--  for XCasWriterCasConsumer -->
-		</dependency>
-		
-				
-	</dependencies>
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<artifactId>ctakes-core</artifactId>
+	<name>Apache cTAKES core</name>
+	<parent>
+		<groupId>org.apache.ctakes</groupId>
+		<artifactId>ctakes</artifactId>
+		<version>3.1.1</version>
+	</parent>
+	<dependencies>
+	     <dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-core-res</artifactId>
+		</dependency>		    
+  		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-type-system</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-utils</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.uimafit</groupId>
+			<artifactId>uimafit</artifactId>
+		</dependency>
+		<dependency>
+			<!-- needed for uimafit, but excluded in parent pom -->
+			<groupId>commons-io</groupId>
+			<artifactId>commons-io</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>jdom</groupId>
+			<artifactId>jdom</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.jdom</groupId>
+			<artifactId>jdom2</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>com.google.guava</groupId>
+			<artifactId>guava</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>log4j</groupId>
+			<artifactId>log4j</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.opennlp</groupId>
+			<artifactId>opennlp-maxent</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.opennlp</groupId>
+			<artifactId>opennlp-tools</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.lucene</groupId>
+			<artifactId>lucene-core</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>junit</groupId>
+			<artifactId>junit</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>edu.mit.findstruct</groupId>
+			<artifactId>findstructapi</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>com.googlecode.armbrust-file-utils</groupId>
+			<artifactId>sqlwrapper</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>net.sourceforge.openai</groupId>
+			<artifactId>openaifsm</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.uima</groupId>
+			<artifactId>uimaj-examples</artifactId> <!--  for XCasWriterCasConsumer -->
+		</dependency>
+		
+				
+	</dependencies>
+</project>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-coreference-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-coreference-res/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-coreference-res/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-coreference-res/pom.xml Thu Nov 14 19:57:46 2013
@@ -24,7 +24,7 @@
   <parent>
     <groupId>org.apache.ctakes</groupId>
     <artifactId>ctakes</artifactId>
-    <version>3.2.0-SNAPSHOT</version>
+    <version>3.1.1</version>
   </parent>
   <artifactId>ctakes-coreference-res</artifactId>
   <name>Apache cTAKES Resources coreference</name>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-coreference/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-coreference/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-coreference/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-coreference/pom.xml Thu Nov 14 19:57:46 2013
@@ -1,94 +1,94 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
-    Licensed to the Apache Software Foundation (ASF) under one
-    or more contributor license agreements.  See the NOTICE file
-    distributed with this work for additional information
-    regarding copyright ownership.  The ASF licenses this file
-    to you under the Apache License, Version 2.0 (the
-    "License"); you may not use this file except in compliance
-    with the License.  You may obtain a copy of the License at
-
-      http://www.apache.org/licenses/LICENSE-2.0
-
-    Unless required by applicable law or agreed to in writing,
-    software distributed under the License is distributed on an
-    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    KIND, either express or implied.  See the License for the
-    specific language governing permissions and limitations
-    under the License.
-
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<artifactId>ctakes-coreference</artifactId>
-	<name>Apache cTAKES CoReference Resolver</name>
-	<parent>
-		<groupId>org.apache.ctakes</groupId>
-		<artifactId>ctakes</artifactId>
-		<version>3.2.0-SNAPSHOT</version>
-	</parent>
-	<dependencies>
-	     <dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-coreference-res</artifactId>
-		</dependency>		    
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-type-system</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-core</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-utils</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-constituency-parser</artifactId>
-		</dependency>		
-		<dependency>
-			<groupId>org.apache.opennlp</groupId>
-			<artifactId>opennlp-tools</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>log4j</groupId>
-			<artifactId>log4j</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>jdom</groupId>
-			<artifactId>jdom</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>junit</groupId>
-			<artifactId>junit</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-relation-extractor</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-dictionary-lookup</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>net.sourceforge.ctakesresources</groupId>
-			<artifactId>ctakes-resources-umls2011ab</artifactId>
-			<version>3.1.1</version>
-		</dependency>
-	</dependencies>
-	
-		<build>
-		<plugins>
-			<plugin>
-				<groupId>org.cleartk</groupId>
-				<artifactId>jcasgen-maven-plugin</artifactId>
-				<configuration>
-					<typeSystem>src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml</typeSystem>
-				</configuration>
-			</plugin>
-		</plugins>
-	</build>
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<artifactId>ctakes-coreference</artifactId>
+	<name>Apache cTAKES CoReference Resolver</name>
+	<parent>
+		<groupId>org.apache.ctakes</groupId>
+		<artifactId>ctakes</artifactId>
+		<version>3.1.1</version>
+	</parent>
+	<dependencies>
+	     <dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-coreference-res</artifactId>
+		</dependency>		    
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-type-system</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-core</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-utils</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-constituency-parser</artifactId>
+		</dependency>		
+		<dependency>
+			<groupId>org.apache.opennlp</groupId>
+			<artifactId>opennlp-tools</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>log4j</groupId>
+			<artifactId>log4j</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>jdom</groupId>
+			<artifactId>jdom</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>junit</groupId>
+			<artifactId>junit</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-relation-extractor</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-dictionary-lookup</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>net.sourceforge.ctakesresources</groupId>
+			<artifactId>ctakes-resources-umls2011ab</artifactId>
+			<version>3.1.1</version>
+		</dependency>
+	</dependencies>
+	
+		<build>
+		<plugins>
+			<plugin>
+				<groupId>org.cleartk</groupId>
+				<artifactId>jcasgen-maven-plugin</artifactId>
+				<configuration>
+					<typeSystem>src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml</typeSystem>
+				</configuration>
+			</plugin>
+		</plugins>
+	</build>
+</project>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-dependency-parser-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-dependency-parser-res/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-dependency-parser-res/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-dependency-parser-res/pom.xml Thu Nov 14 19:57:46 2013
@@ -24,7 +24,7 @@
   <parent>
     <groupId>org.apache.ctakes</groupId>
     <artifactId>ctakes</artifactId>
-    <version>3.2.0-SNAPSHOT</version>
+    <version>3.1.1</version>
   </parent>
   <artifactId>ctakes-dependency-parser-res</artifactId>
   <name>Apache cTAKES Resources dependency-parser</name>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-dependency-parser/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-dependency-parser/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-dependency-parser/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-dependency-parser/pom.xml Thu Nov 14 19:57:46 2013
@@ -1,94 +1,94 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
-    Licensed to the Apache Software Foundation (ASF) under one
-    or more contributor license agreements.  See the NOTICE file
-    distributed with this work for additional information
-    regarding copyright ownership.  The ASF licenses this file
-    to you under the Apache License, Version 2.0 (the
-    "License"); you may not use this file except in compliance
-    with the License.  You may obtain a copy of the License at
-
-      http://www.apache.org/licenses/LICENSE-2.0
-
-    Unless required by applicable law or agreed to in writing,
-    software distributed under the License is distributed on an
-    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    KIND, either express or implied.  See the License for the
-    specific language governing permissions and limitations
-    under the License.
-
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<artifactId>ctakes-dependency-parser</artifactId>
-	<name>Apache cTAKES Dependency Parser</name>
-	<parent>
-		<groupId>org.apache.ctakes</groupId>
-		<artifactId>ctakes</artifactId>
-		<version>3.2.0-SNAPSHOT</version>
-	</parent>
-	<dependencies>
-	     <dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-dependency-parser-res</artifactId>
-		</dependency>		        
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-type-system</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-core</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-lvg</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-pos-tagger</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.ctakes</groupId>
-			<artifactId>ctakes-utils</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>com.googlecode.clearnlp</groupId>
-			<artifactId>clearnlp</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>args4j</groupId>
-			<artifactId>args4j</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>junit</groupId>
-			<artifactId>junit</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.cleartk</groupId>
-			<artifactId>cleartk-util</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>org.uimafit</groupId>
-			<artifactId>uimafit</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>com.carrotsearch</groupId>
-			<artifactId>hppc</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>commons-io</groupId>
-			<artifactId>commons-io</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>commons-lang</groupId>
-			<artifactId>commons-lang</artifactId>
-		</dependency>
-		<dependency>
-			<groupId>commons-logging</groupId>
-			<artifactId>commons-logging</artifactId>
-		</dependency>
-	</dependencies>
-	<description>This wraps the ClearNLP dependency parser and semantic role labeler into a UIMA friendly annotator</description>
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<artifactId>ctakes-dependency-parser</artifactId>
+	<name>Apache cTAKES Dependency Parser</name>
+	<parent>
+		<groupId>org.apache.ctakes</groupId>
+		<artifactId>ctakes</artifactId>
+		<version>3.1.1</version>
+	</parent>
+	<dependencies>
+	     <dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-dependency-parser-res</artifactId>
+		</dependency>		        
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-type-system</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-core</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-lvg</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-pos-tagger</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.ctakes</groupId>
+			<artifactId>ctakes-utils</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>com.googlecode.clearnlp</groupId>
+			<artifactId>clearnlp</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>args4j</groupId>
+			<artifactId>args4j</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>junit</groupId>
+			<artifactId>junit</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.cleartk</groupId>
+			<artifactId>cleartk-util</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.uimafit</groupId>
+			<artifactId>uimafit</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>com.carrotsearch</groupId>
+			<artifactId>hppc</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>commons-io</groupId>
+			<artifactId>commons-io</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>commons-lang</groupId>
+			<artifactId>commons-lang</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>commons-logging</groupId>
+			<artifactId>commons-logging</artifactId>
+		</dependency>
+	</dependencies>
+	<description>This wraps the ClearNLP dependency parser and semantic role labeler into a UIMA friendly annotator</description>
+</project>

Modified: ctakes/branches/ctakes-3.1.1/ctakes-dictionary-lookup-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-dictionary-lookup-res/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-dictionary-lookup-res/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-dictionary-lookup-res/pom.xml Thu Nov 14 19:57:46 2013
@@ -24,7 +24,7 @@
   <parent>
     <groupId>org.apache.ctakes</groupId>
     <artifactId>ctakes</artifactId>
-    <version>3.2.0-SNAPSHOT</version>
+    <version>3.1.1</version>
   </parent>
   <artifactId>ctakes-dictionary-lookup-res</artifactId>
   <name>Apache cTAKES Resources dictionary-lookup</name>



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