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From james-mas...@apache.org
Subject svn commit: r1517918 - in /ctakes/branches/ctakes-3.1.0: ./ ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/ ctakes-side-effect/desc/analysis_engine/
Date Tue, 27 Aug 2013 18:51:00 GMT
Author: james-masanz
Date: Tue Aug 27 18:50:59 2013
New Revision: 1517918

URL: http://svn.apache.org/r1517918
Log:
merge CTAKES-141 r1442300, which was copied to r1517854 for trunk, into 3.1.0 branch

Modified:
    ctakes/branches/ctakes-3.1.0/   (props changed)
    ctakes/branches/ctakes-3.1.0/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffect.xml
    ctakes/branches/ctakes-3.1.0/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml
    ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml
    ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml
    ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml
    ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml
    ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml
    ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml
    ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml
    ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml

Propchange: ctakes/branches/ctakes-3.1.0/
------------------------------------------------------------------------------
  Merged /ctakes/trunk:r1517854

Modified: ctakes/branches/ctakes-3.1.0/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffect.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.0/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffect.xml?rev=1517918&r1=1517917&r2=1517918&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.0/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffect.xml
(original)
+++ ctakes/branches/ctakes-3.1.0/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffect.xml
Tue Aug 27 18:50:59 2013
@@ -225,7 +225,7 @@
 				<properties>
 					<property key="textMetaFields" value="preferred_designation|other_designation"/>
 					<property key="maxPermutationLevel" value="5"/>
-					<property key="windowAnnotations" value="edu.mayo.bmi.uima.lookup.type.DrugLookupWindowAnnotation"/>
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation"/>
 					<property key="exclusionTags" value="AUX,AUXD,AUXG,AUXN,AUXP,AUXZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
 				</properties>
 			</lookupInitializer>

Modified: ctakes/branches/ctakes-3.1.0/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.0/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml?rev=1517918&r1=1517917&r2=1517918&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.0/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml
(original)
+++ ctakes/branches/ctakes-3.1.0/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml
Tue Aug 27 18:50:59 2013
@@ -226,7 +226,7 @@
 				<properties>
 					<property key="textMetaFields" value="preferred_designation|other_designation"/>
 					<property key="maxPermutationLevel" value="5"/>
-					<property key="windowAnnotations" value="edu.mayo.bmi.uima.lookup.type.DrugLookupWindowAnnotation"/>
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation"/>
 					<property key="exclusionTags" value="AUX,AUXD,AUXG,AUXN,AUXP,AUXZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
 				</properties>
 			</lookupInitializer>

Modified: ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml?rev=1517918&r1=1517917&r2=1517918&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml
(original)
+++ ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml
Tue Aug 27 18:50:59 2013
@@ -86,7 +86,7 @@
       <nameValuePair>
         <name>ChunkCreatorClass</name>
         <value>
-          <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+          <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
         </value>
       </nameValuePair>
     </configurationParameterSettings>

Modified: ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml?rev=1517918&r1=1517917&r2=1517918&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml
(original)
+++ ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml
Tue Aug 27 18:50:59 2013
@@ -86,7 +86,7 @@
       <nameValuePair>
         <name>ChunkCreatorClass</name>
         <value>
-          <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+          <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
         </value>
       </nameValuePair>
     </configurationParameterSettings>

Modified: ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml?rev=1517918&r1=1517917&r2=1517918&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml
(original)
+++ ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml
Tue Aug 27 18:50:59 2013
@@ -86,7 +86,7 @@
       <nameValuePair>
         <name>ChunkCreatorClass</name>
         <value>
-          <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+          <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
         </value>
       </nameValuePair>
     </configurationParameterSettings>

Modified: ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml?rev=1517918&r1=1517917&r2=1517918&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml
(original)
+++ ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml
Tue Aug 27 18:50:59 2013
@@ -86,7 +86,7 @@
       <nameValuePair>
         <name>ChunkCreatorClass</name>
         <value>
-          <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+          <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
         </value>
       </nameValuePair>
     </configurationParameterSettings>

Modified: ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml?rev=1517918&r1=1517917&r2=1517918&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml
(original)
+++ ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml
Tue Aug 27 18:50:59 2013
@@ -97,7 +97,7 @@
       <nameValuePair>
         <name>ChunkCreatorClass</name>
         <value>
-          <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+          <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
         </value>
       </nameValuePair>
     </configurationParameterSettings>

Modified: ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml?rev=1517918&r1=1517917&r2=1517918&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml
(original)
+++ ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml
Tue Aug 27 18:50:59 2013
@@ -97,7 +97,7 @@
       <nameValuePair>
         <name>ChunkCreatorClass</name>
         <value>
-          <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+          <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
         </value>
       </nameValuePair>
     </configurationParameterSettings>

Modified: ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml?rev=1517918&r1=1517917&r2=1517918&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml
(original)
+++ ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml
Tue Aug 27 18:50:59 2013
@@ -97,7 +97,7 @@
       <nameValuePair>
         <name>ChunkCreatorClass</name>
         <value>
-          <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+          <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
         </value>
       </nameValuePair>
     </configurationParameterSettings>

Modified: ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml?rev=1517918&r1=1517917&r2=1517918&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml
(original)
+++ ctakes/branches/ctakes-3.1.0/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml
Tue Aug 27 18:50:59 2013
@@ -97,7 +97,7 @@
       <nameValuePair>
         <name>ChunkCreatorClass</name>
         <value>
-          <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+          <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
         </value>
       </nameValuePair>
     </configurationParameterSettings>



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