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From chen...@apache.org
Subject svn commit: r1516535 - in /ctakes/trunk: ./ ctakes-examples/ ctakes-examples/.settings/ ctakes-examples/data/ ctakes-examples/src/ ctakes-examples/src/main/ ctakes-examples/src/main/java/ ctakes-examples/src/main/resources/ ctakes-examples/src/test/ ct...
Date Thu, 22 Aug 2013 18:32:24 GMT
Author: chenpei
Date: Thu Aug 22 18:32:23 2013
New Revision: 1516535

URL: http://svn.apache.org/r1516535
Log:
CTAKES-223 - Thanks John Green for contributing the sample clinical notes.  Added it to the
ctakes-examples project.  the dir structure may change once the gold annotations get started...

Added:
    ctakes/trunk/ctakes-examples/
    ctakes/trunk/ctakes-examples/.classpath   (with props)
    ctakes/trunk/ctakes-examples/.project   (with props)
    ctakes/trunk/ctakes-examples/.settings/
    ctakes/trunk/ctakes-examples/.settings/org.eclipse.core.resources.prefs
    ctakes/trunk/ctakes-examples/.settings/org.eclipse.jdt.core.prefs
    ctakes/trunk/ctakes-examples/.settings/org.eclipse.m2e.core.prefs
    ctakes/trunk/ctakes-examples/data/
    ctakes/trunk/ctakes-examples/data/GenSurg_UmbilicalHernia_1.rtf
    ctakes/trunk/ctakes-examples/data/OBGYN_HysterectomyAndBSO_1.rtf
    ctakes/trunk/ctakes-examples/data/OBGYN_IUD_1.rtf
    ctakes/trunk/ctakes-examples/data/OBGYN_LaborProgressNote_1.rtf
    ctakes/trunk/ctakes-examples/data/OBGYN_MVAPrego_1.rtf
    ctakes/trunk/ctakes-examples/data/OBGYN_PROMCheck_1.rtf
    ctakes/trunk/ctakes-examples/pom.xml   (with props)
    ctakes/trunk/ctakes-examples/src/
    ctakes/trunk/ctakes-examples/src/main/
    ctakes/trunk/ctakes-examples/src/main/java/
    ctakes/trunk/ctakes-examples/src/main/resources/
    ctakes/trunk/ctakes-examples/src/test/
    ctakes/trunk/ctakes-examples/src/test/java/
    ctakes/trunk/ctakes-examples/src/test/resources/
Modified:
    ctakes/trunk/pom.xml

Added: ctakes/trunk/ctakes-examples/.classpath
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples/.classpath?rev=1516535&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples/.classpath (added)
+++ ctakes/trunk/ctakes-examples/.classpath Thu Aug 22 18:32:23 2013
@@ -0,0 +1,36 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="src" output="target/classes" path="src/main/java">
+		<attributes>
+			<attribute name="optional" value="true"/>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
+		<attributes>
+			<attribute name="optional" value="true"/>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="output" path="target/classes"/>
+</classpath>

Propchange: ctakes/trunk/ctakes-examples/.classpath
------------------------------------------------------------------------------
    svn:eol-style = native

Added: ctakes/trunk/ctakes-examples/.project
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples/.project?rev=1516535&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples/.project (added)
+++ ctakes/trunk/ctakes-examples/.project Thu Aug 22 18:32:23 2013
@@ -0,0 +1,23 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>ctakes-examples</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.m2e.core.maven2Builder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+		<nature>org.eclipse.m2e.core.maven2Nature</nature>
+	</natures>
+</projectDescription>

Propchange: ctakes/trunk/ctakes-examples/.project
------------------------------------------------------------------------------
    svn:eol-style = native

Added: ctakes/trunk/ctakes-examples/.settings/org.eclipse.core.resources.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples/.settings/org.eclipse.core.resources.prefs?rev=1516535&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples/.settings/org.eclipse.core.resources.prefs (added)
+++ ctakes/trunk/ctakes-examples/.settings/org.eclipse.core.resources.prefs Thu Aug 22 18:32:23
2013
@@ -0,0 +1,6 @@
+eclipse.preferences.version=1
+encoding//src/main/java=UTF-8
+encoding//src/main/resources=UTF-8
+encoding//src/test/java=UTF-8
+encoding//src/test/resources=UTF-8
+encoding/<project>=UTF-8

Added: ctakes/trunk/ctakes-examples/.settings/org.eclipse.jdt.core.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples/.settings/org.eclipse.jdt.core.prefs?rev=1516535&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples/.settings/org.eclipse.jdt.core.prefs (added)
+++ ctakes/trunk/ctakes-examples/.settings/org.eclipse.jdt.core.prefs Thu Aug 22 18:32:23
2013
@@ -0,0 +1,88 @@
+eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.annotation.missingNonNullByDefaultAnnotation=ignore
+org.eclipse.jdt.core.compiler.annotation.nonnull=org.eclipse.jdt.annotation.NonNull
+org.eclipse.jdt.core.compiler.annotation.nonnullbydefault=org.eclipse.jdt.annotation.NonNullByDefault
+org.eclipse.jdt.core.compiler.annotation.nullable=org.eclipse.jdt.annotation.Nullable
+org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.6
+org.eclipse.jdt.core.compiler.compliance=1.6
+org.eclipse.jdt.core.compiler.problem.annotationSuperInterface=warning
+org.eclipse.jdt.core.compiler.problem.autoboxing=ignore
+org.eclipse.jdt.core.compiler.problem.comparingIdentical=warning
+org.eclipse.jdt.core.compiler.problem.deadCode=warning
+org.eclipse.jdt.core.compiler.problem.deprecation=warning
+org.eclipse.jdt.core.compiler.problem.deprecationInDeprecatedCode=disabled
+org.eclipse.jdt.core.compiler.problem.deprecationWhenOverridingDeprecatedMethod=disabled
+org.eclipse.jdt.core.compiler.problem.discouragedReference=warning
+org.eclipse.jdt.core.compiler.problem.emptyStatement=warning
+org.eclipse.jdt.core.compiler.problem.explicitlyClosedAutoCloseable=warning
+org.eclipse.jdt.core.compiler.problem.fallthroughCase=ignore
+org.eclipse.jdt.core.compiler.problem.fatalOptionalError=disabled
+org.eclipse.jdt.core.compiler.problem.fieldHiding=warning
+org.eclipse.jdt.core.compiler.problem.finalParameterBound=warning
+org.eclipse.jdt.core.compiler.problem.finallyBlockNotCompletingNormally=warning
+org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
+org.eclipse.jdt.core.compiler.problem.hiddenCatchBlock=warning
+org.eclipse.jdt.core.compiler.problem.includeNullInfoFromAsserts=disabled
+org.eclipse.jdt.core.compiler.problem.incompatibleNonInheritedInterfaceMethod=warning
+org.eclipse.jdt.core.compiler.problem.incompleteEnumSwitch=warning
+org.eclipse.jdt.core.compiler.problem.indirectStaticAccess=warning
+org.eclipse.jdt.core.compiler.problem.localVariableHiding=warning
+org.eclipse.jdt.core.compiler.problem.methodWithConstructorName=warning
+org.eclipse.jdt.core.compiler.problem.missingDefaultCase=ignore
+org.eclipse.jdt.core.compiler.problem.missingDeprecatedAnnotation=warning
+org.eclipse.jdt.core.compiler.problem.missingEnumCaseDespiteDefault=disabled
+org.eclipse.jdt.core.compiler.problem.missingHashCodeMethod=warning
+org.eclipse.jdt.core.compiler.problem.missingOverrideAnnotation=warning
+org.eclipse.jdt.core.compiler.problem.missingOverrideAnnotationForInterfaceMethodImplementation=disabled
+org.eclipse.jdt.core.compiler.problem.missingSerialVersion=warning
+org.eclipse.jdt.core.compiler.problem.missingSynchronizedOnInheritedMethod=warning
+org.eclipse.jdt.core.compiler.problem.noEffectAssignment=warning
+org.eclipse.jdt.core.compiler.problem.noImplicitStringConversion=warning
+org.eclipse.jdt.core.compiler.problem.nonExternalizedStringLiteral=ignore
+org.eclipse.jdt.core.compiler.problem.nullAnnotationInferenceConflict=error
+org.eclipse.jdt.core.compiler.problem.nullReference=warning
+org.eclipse.jdt.core.compiler.problem.nullSpecViolation=error
+org.eclipse.jdt.core.compiler.problem.nullUncheckedConversion=warning
+org.eclipse.jdt.core.compiler.problem.overridingPackageDefaultMethod=warning
+org.eclipse.jdt.core.compiler.problem.parameterAssignment=ignore
+org.eclipse.jdt.core.compiler.problem.possibleAccidentalBooleanAssignment=warning
+org.eclipse.jdt.core.compiler.problem.potentialNullReference=warning
+org.eclipse.jdt.core.compiler.problem.potentiallyUnclosedCloseable=warning
+org.eclipse.jdt.core.compiler.problem.rawTypeReference=warning
+org.eclipse.jdt.core.compiler.problem.redundantNullAnnotation=warning
+org.eclipse.jdt.core.compiler.problem.redundantNullCheck=warning
+org.eclipse.jdt.core.compiler.problem.redundantSpecificationOfTypeArguments=warning
+org.eclipse.jdt.core.compiler.problem.redundantSuperinterface=warning
+org.eclipse.jdt.core.compiler.problem.reportMethodCanBePotentiallyStatic=ignore
+org.eclipse.jdt.core.compiler.problem.reportMethodCanBeStatic=warning
+org.eclipse.jdt.core.compiler.problem.specialParameterHidingField=disabled
+org.eclipse.jdt.core.compiler.problem.staticAccessReceiver=warning
+org.eclipse.jdt.core.compiler.problem.suppressOptionalErrors=disabled
+org.eclipse.jdt.core.compiler.problem.suppressWarnings=enabled
+org.eclipse.jdt.core.compiler.problem.syntheticAccessEmulation=warning
+org.eclipse.jdt.core.compiler.problem.typeParameterHiding=warning
+org.eclipse.jdt.core.compiler.problem.unavoidableGenericTypeProblems=enabled
+org.eclipse.jdt.core.compiler.problem.uncheckedTypeOperation=warning
+org.eclipse.jdt.core.compiler.problem.unclosedCloseable=warning
+org.eclipse.jdt.core.compiler.problem.undocumentedEmptyBlock=warning
+org.eclipse.jdt.core.compiler.problem.unhandledWarningToken=warning
+org.eclipse.jdt.core.compiler.problem.unnecessaryElse=warning
+org.eclipse.jdt.core.compiler.problem.unnecessaryTypeCheck=warning
+org.eclipse.jdt.core.compiler.problem.unqualifiedFieldAccess=ignore
+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownException=warning
+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownExceptionExemptExceptionAndThrowable=enabled
+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownExceptionIncludeDocCommentReference=enabled
+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownExceptionWhenOverriding=disabled
+org.eclipse.jdt.core.compiler.problem.unusedImport=warning
+org.eclipse.jdt.core.compiler.problem.unusedLabel=warning
+org.eclipse.jdt.core.compiler.problem.unusedLocal=warning
+org.eclipse.jdt.core.compiler.problem.unusedObjectAllocation=warning
+org.eclipse.jdt.core.compiler.problem.unusedParameter=warning
+org.eclipse.jdt.core.compiler.problem.unusedParameterIncludeDocCommentReference=enabled
+org.eclipse.jdt.core.compiler.problem.unusedParameterWhenImplementingAbstract=disabled
+org.eclipse.jdt.core.compiler.problem.unusedParameterWhenOverridingConcrete=disabled
+org.eclipse.jdt.core.compiler.problem.unusedPrivateMember=warning
+org.eclipse.jdt.core.compiler.problem.unusedWarningToken=ignore
+org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=warning
+org.eclipse.jdt.core.compiler.source=1.6

Added: ctakes/trunk/ctakes-examples/.settings/org.eclipse.m2e.core.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples/.settings/org.eclipse.m2e.core.prefs?rev=1516535&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples/.settings/org.eclipse.m2e.core.prefs (added)
+++ ctakes/trunk/ctakes-examples/.settings/org.eclipse.m2e.core.prefs Thu Aug 22 18:32:23
2013
@@ -0,0 +1,4 @@
+activeProfiles=
+eclipse.preferences.version=1
+resolveWorkspaceProjects=true
+version=1

Added: ctakes/trunk/ctakes-examples/data/GenSurg_UmbilicalHernia_1.rtf
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples/data/GenSurg_UmbilicalHernia_1.rtf?rev=1516535&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples/data/GenSurg_UmbilicalHernia_1.rtf (added)
+++ ctakes/trunk/ctakes-examples/data/GenSurg_UmbilicalHernia_1.rtf Thu Aug 22 18:32:23 2013
@@ -0,0 +1,36 @@
+{\rtf1\ansi\ansicpg1252\cocoartf1138\cocoasubrtf510
+{\fonttbl\f0\fswiss\fcharset0 ArialMT;}
+{\colortbl;\red255\green255\blue255;}
+\margl1440\margr1440\vieww10800\viewh8400\viewkind0
+\deftab720
+\pard\pardeftab720
+
+\f0\fs24 \cf0 Case description for C-Takes documenting:\
+Setting: Outpatient.\
+Specialty: General Surgery.\'a0\
+Note detail level (1-5): 3.\
+Level of abbreviation (Low/Medium/High): Medium.\'a0\
+\
+CC/HPI: Mrs. X is a 66 yo caucasian woman w/ a known hist of umbilical hernia who presents
to the clinic for f/u of a suspected umbilical hernia s/p panni. The panni was performed on
2 Feb 2010. She presented to the clinic 3 weeks ago for 'redness' and TTP periumbilically.
At that time an umbilical hernia was suspected, however the US at that time was documented
as being negative. Patient was scheduled for f/u today. She describes that it feels worse
after being "on her feet all day". Better or gone when she lies down. When she eats it feels
like "her guts are going to pop out". It also feels like she needs to burp all the time like
"she drank a soda". This is the first day she has been able to get around relatively comfortably
w/o her abdominal binder. She can not eat much due to all of the above. She states that the
symptoms she is experiencing are consistent with the symptioms she felt 17 years ago when
she had an umbilical hernia.\'a0\
+\pard\pardeftab720\sa240
+\cf0 ROS:\'a0Denies n/v/cp/sob/f/c/ns.\'a0Reflux/burping as noted. Consistently constipated
and when she bears down now\'a0 s/p panni, she can not feel herself deficate. She does have
atleast one bowel a day on average. She has had bladder dysfunction for which she is seeing
OBGYN, however it seems to have began before the panni.\
+\pard\pardeftab720
+\cf0 PMHx: Umbilical hernia 17 years ago, thyroid cancer, gall bladder disease, HTN.\
+\
+PSHx: Panni, Breast reduction, Cholcystectomy, partial thyroidectomy.\
+\
+Meds: Lisinopril, Mobec, Primpro, Synthroid, Prilosec, Zocar, Asp, Zirtec, Hydrochlorothyazide.\
+\
+Allergies: Sulfa.\
+\pard\pardeftab720\sa240
+\cf0 PE:\uc0\u8232 CV: No r/m/g. RRR.\u8232 Pulm: CTAB.\u8232 Abd: Inspection of the abdomen
revealed NBS. Periumbilical erythema with TTP was appreciated. Bulging at umbilicis on valsalva.\
+\pard\pardeftab720
+\cf0 Labs/Ancillary studies:\'a0\
+US: Revealed no disruption of the abdominal fascia while standing or while standing w/ valsalva.\
+\
+A/P:\'a0\
+Umbilical hernia: Mrs. X is a 66 yo woman in no acute distress who is now s/p panni w/ a
known history of umbilical hernia 17 years ago with s/s c/w with an umbilical hernia but negative
US.\'a0\
+- Check creatinine with BMP.\
+- Order CT with PO/IV contrast.\
+- Schedule f/u after results.\
+}
\ No newline at end of file

Added: ctakes/trunk/ctakes-examples/data/OBGYN_HysterectomyAndBSO_1.rtf
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples/data/OBGYN_HysterectomyAndBSO_1.rtf?rev=1516535&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples/data/OBGYN_HysterectomyAndBSO_1.rtf (added)
+++ ctakes/trunk/ctakes-examples/data/OBGYN_HysterectomyAndBSO_1.rtf Thu Aug 22 18:32:23 2013
@@ -0,0 +1,28 @@
+Case description for C-Takes documenting:
+Setting: Inpatient.
+Specialty: OB/GYN. 
+Note detail level (1-5): 2.
+Level of abbreviation (Low/Medium/High): Medium.
+
+S:
+Mrs X is a 61 yo caucasian woman G2P2 now POD 1 s/p TLH/BSO/PPALND complicated by a minor
bowel perforation. Procedure for Endometriod adenocarcinoma FIGO grade 1.
+Overnight: Patient denies n/v, chills/fevers/night sweats. She is not ambulating. Foley is
still in. She has not passed flatus or stool. Is eating a little.
+Pain is well controlled on Ultram.
+
+O:
+Vits: HR 86 (86), BP 108/69 (132/81) Tmax 99.5 Tc 99.5 RR 18(20) Spo2 95 RA
+I: 1325 O: 2200
+CV: No r/m/g, rrr. 
+Pulm: CTAB
+Abdom: Non distended, norm bowel snds, not tender to palp. 
+Inc: Clean, intact, mildly erythematous 
+
+Labs/Anc: 13.1/13.8/218/40.7 - 138/3.5/105.2/23/9.4/0.65<134
+
+A/P:
+Mrs. X is a 62 yo POD 1 from TLH/BSO/PPALND doing well with no acute issues. 
+- Continue incentive spirometry. 
+- Continue to advance diet as tolerated. 
+- Return to home meds on discharge.
+- Continue DVT proph. until ambulating.
+- DC foley when ambulating. DC IV. Once ambulating and making urine without foley/IV, discharge
home. 
\ No newline at end of file

Added: ctakes/trunk/ctakes-examples/data/OBGYN_IUD_1.rtf
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples/data/OBGYN_IUD_1.rtf?rev=1516535&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples/data/OBGYN_IUD_1.rtf (added)
+++ ctakes/trunk/ctakes-examples/data/OBGYN_IUD_1.rtf Thu Aug 22 18:32:23 2013
@@ -0,0 +1,26 @@
+Case description for C-Takes documenting:
+Setting: Outpatient.
+Specialty: OB/GYN. 
+Note detail level (1-5): 2.
+Level of abbreviation (Low/Medium/High): Medium.
+
+HPI/CC: Mrs. X is a 33yo G1P1 with a LMP of Feb 5th and a known history of PCOS who presents
to the clinic today with a CC of pelvic pain, spotting, and vaginal odor.
+Patient had an Mirena IUD placed on the 6th of Feb. Since that time she has experienced cyclic
suprapubic/vaginal pain that she associates with the IUD placement.
+The pain has ranged from 6-10/10. Patient has been taking Norco prescribed for chronic back
pain to help "deal" with the IUD related pain.Patient reports feeling dizzy
+and lightheaded since the placement. Upon further questioning patient reports that her partner
can "feel the strings poking him" during intercourse.
+However, she claims she can not locate the IUD strings on self examination.
+
+ROS: Patient denies n/v, f/ns, sob, and cp. She denies dysuria and reports normal bowel movements.

+PMHx: PCOS, otherwise not contributory.
+SurgHx: Not contributory.
+FamHx: Not contributory.
+SocHx: Not contributory.
+Meds: Gabapentin/Norco (chronic back pain).
+
+Vits: BP 113/67, HR 59, T 98.4
+PE: Reveals a fairly fit woman of stated age in mild distress. Normal labia. No discharge
on speculum exam but some blood was noted in the vault along with a faint
+unpleasant odor. 
+
+Labs/Anc: KOH Wet prep revealed multiple hyphae per hpf. Gen probe pending. 
+
+A/P: Mrs. X is a 33yo G1P1 in no acute distress. In clinic for IUD check. Found to have yeast
infection incidentally on KOH wet prep. Will treat with diflucan. 

Added: ctakes/trunk/ctakes-examples/data/OBGYN_LaborProgressNote_1.rtf
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples/data/OBGYN_LaborProgressNote_1.rtf?rev=1516535&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples/data/OBGYN_LaborProgressNote_1.rtf (added)
+++ ctakes/trunk/ctakes-examples/data/OBGYN_LaborProgressNote_1.rtf Thu Aug 22 18:32:23 2013
@@ -0,0 +1,13 @@
+Case description for C-Takes documenting:
+Setting: Inpatient.
+Specialty: OB/GYN. 
+Note detail level (1-5): 1.
+Level of abbreviation (Low/Medium/High): Low.
+
+S: Pt is comfortable s/p epidural, rates pain as a 2/10.
+
+O: Vital signs stable, T99.0. FHR: 145 with moderate variability, pos accels, no recurrent
decels. Strong contractions palpated 2/10min. RT soft. AROM, Clear fluid.
+
+A: Cat 1 tracing, labor progressing.
+
+P: Close observation of maternal fetal well being and labor progression. Re-eval in 2hrs
or PRN.

Added: ctakes/trunk/ctakes-examples/data/OBGYN_MVAPrego_1.rtf
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples/data/OBGYN_MVAPrego_1.rtf?rev=1516535&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples/data/OBGYN_MVAPrego_1.rtf (added)
+++ ctakes/trunk/ctakes-examples/data/OBGYN_MVAPrego_1.rtf Thu Aug 22 18:32:23 2013
@@ -0,0 +1,22 @@
+Case description for C-Takes documenting:
+Setting: Outpatient.
+Specialty: OB/GYN. 
+Note detail level (1-5): 2.
+Level of abbreviation (Low/Medium/High): Medium.
+
+HPI/CC: Mrs. X is a 22 yo G1P0 at 14 and 2 in an uncomplicated pregnancy who presents to
the clinic today with a CC of continued MSK of 1st-3rd metacarpophalangeal joints s/p MVA
4 weeks ago. She is currently in 4/10 pain and is wearing a brace on her right hand. It is
significantly interfering with her ability to perform her work as a waitress. FHTs@154. Currently
has a UTI being managed by another provider. Patient reports some nausea that she associates
with the pregnancy and some SOB also, she feels, associated with the pregnancy. 
+
+ROS: Patient denies vomiting, night sweats, fever, cp, vaginal bleeding/discharge
+PMHx: Migraines. 
+SHx: Not contributory.
+FamHx:Not contributory.
+SocHx: Asked about domestic violence. Patient denies domestic violence at home.
+Meds: Fioricet for migraines. Tylenol, PNV, and an antibiotic she could not recall for a
UTI diagnosed three days by another provider. 
+
+Vits: BP 121/64, HR 97, T 98.7
+PE:
+Reveals a slightly overweight healthy appearing woman of her stated age and gestation. After
removing right hand brace, joints appear slightly swollen compared to the contralateral side.
No erythema, heat. Slightly decreased hand strength/ROM. No tingling, numbness.
+
+Labs/Anc: FHT 154. Radiograph done of wrist at time of accident - does not fully visualize
the affected area. From what can be seen: no fractures.
+
+A/P: Mrs. X is a 22yo G1P0 at 14 and 2 with FHTs@154 s/p MVA with right hand pain. Reassure
her. Give her ibuprofen and council her not to take it after 21 weeks. 

Added: ctakes/trunk/ctakes-examples/data/OBGYN_PROMCheck_1.rtf
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples/data/OBGYN_PROMCheck_1.rtf?rev=1516535&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples/data/OBGYN_PROMCheck_1.rtf (added)
+++ ctakes/trunk/ctakes-examples/data/OBGYN_PROMCheck_1.rtf Thu Aug 22 18:32:23 2013
@@ -0,0 +1,33 @@
+Case description for C-Takes documenting:
+Setting: Outpatient.
+Specialty: OB/GYN. 
+Note detail level (1-5): 3.
+Level of abbreviation (Low/Medium/High): Medium.
+
+Mrs. X is a 31 yo G4P3003 at 25+1 weeks who presents with a CC of leakage of fluid after
urinating and while walking. Her pregnancy has been uncomplicated to date. The leakage began
two days ago in the afternoon. It has continued until today, when she came in to the clinic
at the urging of a friend. It is worse when she walks and after urination. The fluid appears
clear on a pad. It is not copious. She thinks that it may be coming from her vagina, but she
is unsure. Denies gush of fluid, VB, CTX. There is +FM.
+
+ROS: She denies urinary symptoms, cp/sob/n/v/ns/ha/changes in vision.
+GynHx: Last pap last year. No history of abnormal paps. Chlamydia in college. Three previous
pregnancies resulted in uncomplicated SVDs. Pelvis proven to 6lbs 6oz. Last pregnancy complicated
by GDM.
+PMHx: Pt reports congenital heart murmor.
+SurgHx: Non contrib.
+FamHx: Non contrib.
+Meds: PNV - denies any other medications.
+Allergies: NKDA
+
+Vit: Tc 97.9 BP 111/66 HR 80 RR 18 SpO2 100% 
+PE: Well appearing AA woman who appears her stated age and in no acute distress.
+CV: No m/r/g, rrr.
+Abd: Gravid abdomen consistent with gestational age. Gross fetal movement noted.
+Gyn: No leakage of urine w/ cough. Speculum exam: Diffuse vaginal sidewall tenderness, scant
amount of off-white cervical discharge. No odor. No pooling in posterior fornix. Closed cervical
os without friability. No blood noted in vault nor otherwise abnormal discharge.
+
+Labs/Studies:
+KOH/Wet prep showed no clue cells/spores/hyphae.
+Fern test neg. Nitrazine test neg.
+Gon/Chlamydia pending.
+US: AFI 17cm. Observed fetal cardiac activity.
+NST: reactive.
+FHR: 140s w/ pos accels. Rare variable decel. Moderate variability.
+
+A/P:
+Possible PROM: Mrs. X is a 33 yo G4P3003 at 25+1 weeks in no acute distress. No signs of
PROM observed given absence of ferning, neg nitrazine test and AFI WNL. No signs/symptoms
of PTL given history and tocometer. Though patient had vaginal wall tenderness on pelvic exam,
KOH and wetprep unrevealing for evidence of candidal/BV infection and other suggestive symptoms
absent.
+- Discussed with patient to return to triage for vaginal bleeding, s/s of PTL, developing
s/s of candidal infection or other new/concerning symptoms. Otherwise to follow up for ROB
care. Patient indicates understanding and agrees with this plan.

Added: ctakes/trunk/ctakes-examples/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples/pom.xml?rev=1516535&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples/pom.xml (added)
+++ ctakes/trunk/ctakes-examples/pom.xml Thu Aug 22 18:32:23 2013
@@ -0,0 +1,32 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+    <parent>
+    <groupId>org.apache.ctakes</groupId>
+    <artifactId>ctakes</artifactId>
+    <version>3.1.0-SNAPSHOT</version>
+  </parent>
+  <artifactId>ctakes-examples</artifactId>
+  <name>ctakes-examples</name>
+  <description>Apache cTAKES Examples</description>
+</project>
\ No newline at end of file

Propchange: ctakes/trunk/ctakes-examples/pom.xml
------------------------------------------------------------------------------
    svn:eol-style = native

Modified: ctakes/trunk/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/pom.xml?rev=1516535&r1=1516534&r2=1516535&view=diff
==============================================================================
--- ctakes/trunk/pom.xml (original)
+++ ctakes/trunk/pom.xml Thu Aug 22 18:32:23 2013
@@ -131,6 +131,7 @@
 		<module>ctakes-drug-ner-res</module>
 		<module>ctakes-ne-contexts-res</module>
 		<module>ctakes-template-filler</module>
+		<module>ctakes-examples</module>
 	</modules>
 	<dependencyManagement>
 		<dependencies>



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