Return-Path: X-Original-To: apmail-ctakes-commits-archive@www.apache.org Delivered-To: apmail-ctakes-commits-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 20F6910060 for ; Mon, 8 Jul 2013 09:11:55 +0000 (UTC) Received: (qmail 70931 invoked by uid 500); 8 Jul 2013 09:11:41 -0000 Delivered-To: apmail-ctakes-commits-archive@ctakes.apache.org Received: (qmail 70908 invoked by uid 500); 8 Jul 2013 09:11:41 -0000 Mailing-List: contact commits-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: dev@ctakes.apache.org Delivered-To: mailing list commits@ctakes.apache.org Received: (qmail 70890 invoked by uid 99); 8 Jul 2013 09:11:40 -0000 Received: from nike.apache.org (HELO nike.apache.org) (192.87.106.230) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 08 Jul 2013 09:11:40 +0000 X-ASF-Spam-Status: No, hits=-2000.0 required=5.0 tests=ALL_TRUSTED X-Spam-Check-By: apache.org Received: from [140.211.11.4] (HELO eris.apache.org) (140.211.11.4) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 08 Jul 2013 09:11:38 +0000 Received: from eris.apache.org (localhost [127.0.0.1]) by eris.apache.org (Postfix) with ESMTP id 3932E238897A; Mon, 8 Jul 2013 09:11:17 +0000 (UTC) Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Subject: svn commit: r1500617 - /ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/ReadPreprocessTrainTestJudge.java Date: Mon, 08 Jul 2013 09:11:17 -0000 To: commits@ctakes.apache.org From: james-masanz@apache.org X-Mailer: svnmailer-1.0.9 Message-Id: <20130708091117.3932E238897A@eris.apache.org> X-Virus-Checked: Checked by ClamAV on apache.org Author: james-masanz Date: Mon Jul 8 09:11:16 2013 New Revision: 1500617 URL: http://svn.apache.org/r1500617 Log: new 'wrapper'. see AssertionConst for shared constants, using that class rather than having run configs that must be kept in sync Added: ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/ReadPreprocessTrainTestJudge.java (with props) Added: ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/ReadPreprocessTrainTestJudge.java URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/ReadPreprocessTrainTestJudge.java?rev=1500617&view=auto ============================================================================== --- ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/ReadPreprocessTrainTestJudge.java (added) +++ ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/ReadPreprocessTrainTestJudge.java Mon Jul 8 09:11:16 2013 @@ -0,0 +1,56 @@ +package org.apache.ctakes.assertion.train; + +import java.io.File; +import java.util.ArrayList; +import java.util.HashMap; + +import org.apache.ctakes.assertion.eval.AssertionEvaluation; +import org.apache.ctakes.assertion.pipelines.RunJudgeAttributeInstances; +import org.apache.ctakes.assertion.util.AssertionConst; +import org.kohsuke.args4j.Option; + +import scala.actors.threadpool.Arrays; + +public class ReadPreprocessTrainTestJudge { + + public static void main(String[] args) throws Exception { + + ReadAndPreprocessForAttributeModels.main(null); + + TrainAttributeModels.main(null); + + TestAttributeModels.main(null); + + + + // Set up parameters for judging test + // output of test step becomes input for runjudge + ArrayList params; + params = new ArrayList(); + + //@Option( + // name = "--input-dir", + // usage = "where to read the fully-annotated xmi data from", + // required = true) + // public String inputDir = AssertionConst.evalOutputDir; + params.add("--input-dir"); + params.add(AssertionConst.evalOutputDir); + + //@Option( + // name = "--output-dir", + // usage = "where to write the 'adjudicated' instances in xmi format to", + // required = true) + // public String outputDir = AssertionConst.instanceGatheringOutputDir; + params.add("--output-dir"); + params.add(AssertionConst.instanceGatheringOutputDir); + + String [] parmsAsArray; + parmsAsArray = params.toArray(new String[] {}); + + RunJudgeAttributeInstances.main(parmsAsArray); + + // Run the actual assertion preprocessing on just one data source + if (true) /** TODO Should this be done here? **/ AssertionEvaluation.main(parmsAsArray); + + } +} Propchange: ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/ReadPreprocessTrainTestJudge.java ------------------------------------------------------------------------------ svn:mime-type = text/plain