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From chen...@apache.org
Subject svn commit: r1491916 [14/26] - in /ctakes/trunk/ctakes-regression-test/testdata/expectedoutput: CoreferenceCPETest/ POSTaggerCPETest/ RegressionPipelineCPETest/
Date Tue, 11 Jun 2013 19:23:19 GMT
Modified: ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_unknown.txt.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_unknown.txt.xml?rev=1491916&r1=1491915&r2=1491916&view=diff
==============================================================================
--- ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_unknown.txt.xml
(original)
+++ ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_unknown.txt.xml
Tue Jun 11 19:23:17 2013
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <CAS version="2">
-    <uima.cas.Sofa _indexed="0" _id="3" sofaNum="1" sofaID="_InitialView" mimeType="text"
sofaString="Patient Centered Medicine 2&#13;&#10;Revised: 7/27/99&#13;&#10;DATA
BASE: SAMPLE HISTORY&#13;&#10;IDENTIFYING DATA &#13;&#10;CM is a 45-year-old,
widowed, white saleswoman, born in the U.S.&#13;&#10;CHIEF COMPLAINT&#13;&#10;�Bad
headaches�&#13;&#10;HISTORY OF PRESENT ILLNESS &#13;&#10;Patient Perspective&#13;&#10;She
thinks her headaches may be like those in the past. However, she now has high blood&#13;&#10;pressure
and is concerned because her mother had high blood pressure and died of a&#13;&#10;stroke.
She is also concerned that they make her irritable with her family.&#13;&#10;PAST
MEDICAL HISTORY&#13;&#10;Significant Childhood Illnesses&#13;&#10;Only measles
and chickenpox&#13;&#10;Immunizations&#13;&#10;Last tetanus 1998&#13;&#10;Flu
vaccine last November&#13;&#10;Adult Illnesses/Hospitalizations&#13;&#10;-
Kidney infection 1982 treated with ampicillin and d
 eveloped a generalized rash.&#13;&#10;- Hypertension x 7 years, well controlled with
home BPs normally 120-130/low 80s&#13;&#10;Patient Centered Medicine 2&#13;&#10;2
Revised: 7/27/99&#13;&#10;Psychiatric Illnesses/Hospitalizations&#13;&#10;None&#13;&#10;Operations&#13;&#10;Tonsillectomy,
age 6,&#13;&#10;Appendectomy, age 13&#13;&#10;Injuries/Accidents&#13;&#10;1998
foot laceration, 4 stitches&#13;&#10;Obstetric History&#13;&#10;G3, P3, 3
living children. Menarche age 12. Last menses 2 weeks ago.&#13;&#10;Transfusions&#13;&#10;None&#13;&#10;CURRENT
HEALTH STATUS&#13;&#10;Medications&#13;&#10;Aspirin for headaches&#13;&#10;Multivitamin
1 per day&#13;&#10;Hydrochlorothiazide 25 mg per day (x 7 years)&#13;&#10;No
herbs or supplements&#13;&#10;Allergies/Drug Reactions&#13;&#10;Ampicillin
causes rash&#13;&#10;Health Screening&#13;&#10;- Last pap smear 2000, normal.&#13;&#10;-
Normal mammogram in 2000.&#13;&#10;- Does breast self-exams monthly&#13;&#10;-
Cholesterol = 220 (in 2000
 )&#13;&#10;Diet, Sleep, Exercise&#13;&#10;- Diet � Low in calcium with
little milk or cheese. She frequently eats mid-morning and&#13;&#10;evening snacks
that are high in fat. She does follow a low salt diet.&#13;&#10;- Sleep � Generally
good, average 7 hr&#13;&#10;- Exercise � �No time�&#13;&#10;Habits&#13;&#10;-
Alcohol � Rare drink (wine) only, no history of abuse&#13;&#10;- Drugs �
Never tried illegal drugs&#13;&#10;Alternative Therapies&#13;&#10;None&#13;&#10;Patient
Centered Medicine 2&#13;&#10;PSYCHOSOCIAL HISTORY&#13;&#10;- 4 yr ago her
husband died suddenly of heart attack, leaving little savings and no&#13;&#10;insurance.&#13;&#10;-
Lives alone, recently moved to a small apartment to be near daughter&#13;&#10;- Cosmetic
saleswoman for 15 years at Sears. Likes her job but feels stressed by demands&#13;&#10;from
the new manager&#13;&#10;- Not sexually active since the death of her husband who
was her only partner&#13;&#10;- Denies d
 epression&#13;&#10;- Feels safe at work and home&#13;&#10;FAMILY HISTORY&#13;&#10;-
Mother died, 67, stroke; had varicose veins, headaches, hypertension&#13;&#10;- Father
died, 43, train accident&#13;&#10;- One brother, 56, has high blood pressure, otherwise
well&#13;&#10;- One brother, 51, apparently well except for mild arthritis&#13;&#10;-
Daughter, 23, �migraine headaches,� otherwise well&#13;&#10;- Son, 21, well&#13;&#10;-
Son, 20, well&#13;&#10;REVIEW OF SYSTEMS:&#13;&#10;General: Has gained about
10 lb in the past 4 yr, no fatigue&#13;&#10;Skin: No rashes or other changes&#13;&#10;Head:
See present illness.&#13;&#10;Eyes: Reading glasses for 5 yr, last checked 1 yr ago.
No double or blurry vision&#13;&#10;Ears: Hearing good. No tinnitus, vertigo, infections&#13;&#10;Nose,
Sinuses: occasional mild cold. No hay fever, sinus trouble&#13;&#10;Mouth and Throat:
Last to dentist 2 yr ago. Occasional canker sore&#13;&#10;Neck: No lumps, goiter,
pain&#13;&#10;Breasts
 : No lumps, pain, discharge.&#13;&#10;Respiratory: No cough, wheezing, shortness
of breath, pneumonia, tuberculosis.&#13;&#10;Cardiac: No known heart disease. No orthopnea,
chest pain, palpitations.&#13;&#10;Gastrointestinal: Appetite good; no reflux. Bowel
movement about once daily though&#13;&#10;sometimes has hard stools for 2-3 d when
especially tense; no diarrhea or&#13;&#10;bleeding. No pain, jaundice, gallbladder
or liver trouble&#13;&#10;Urinary: No frequency, dysuria, hematuria or flank pain&#13;&#10;Genitoreproductive:
Regular menstrual periods. No vaginal discharge or itch&#13;&#10;Musculoskeletal:
Mild aching low back pain often after a long day�s work; no radiation&#13;&#10;down
legs; used to do back exercises, but not now. No other joint pain&#13;&#10;Patient
Centered Medicine 2&#13;&#10;Peripheral Vascular: Varicose veins appeared in both
legs during first pregnancy. Has had&#13;&#10;swollen ankles after prolonged standing
for 10 yr; no history of&#13;&#1
 0;phlebitis or leg pain&#13;&#10;Neurological: No fainting, seizures, tremors, weakness,
or tingling. Memory good&#13;&#10;Psychiatric: No anxiety or nervousness or depression&#13;&#10;Endocrine:
No known thyroid trouble, temperature intolerance. Sweating average. No&#13;&#10;symptoms
or history of diabetes&#13;&#10;Hematologic: No easy bleeding. No anemia&#13;&#10;Adapted
from Bates� Guide to Physical Examination and History Taking, Chapter 21, The Patient�s
Record, pp. 722-&#13;&#10;726"/>
+    <uima.cas.Sofa _indexed="0" _id="3" sofaNum="1" sofaID="_InitialView" mimeType="text"
sofaString="Patient Centered Medicine 2&#13;&#10;Revised: 7/27/99&#13;&#10;DATA
BASE: SAMPLE HISTORY&#13;&#10;IDENTIFYING DATA &#13;&#10;CM is a 45-year-old,
widowed, white saleswoman, born in the U.S.&#13;&#10;CHIEF COMPLAINT&#13;&#10;“Bad
headaches”&#13;&#10;HISTORY OF PRESENT ILLNESS &#13;&#10;Patient Perspective&#13;&#10;She
thinks her headaches may be like those in the past. However, she now has high blood&#13;&#10;pressure
and is concerned because her mother had high blood pressure and died of a&#13;&#10;stroke.
She is also concerned that they make her irritable with her family.&#13;&#10;PAST
MEDICAL HISTORY&#13;&#10;Significant Childhood Illnesses&#13;&#10;Only measles
and chickenpox&#13;&#10;Immunizations&#13;&#10;Last tetanus 1998&#13;&#10;Flu
vaccine last November&#13;&#10;Adult Illnesses/Hospitalizations&#13;&#10;-
Kidney infection 1982 treated with ampicillin and d
 eveloped a generalized rash.&#13;&#10;- Hypertension x 7 years, well controlled with
home BPs normally 120-130/low 80s&#13;&#10;Patient Centered Medicine 2&#13;&#10;2
Revised: 7/27/99&#13;&#10;Psychiatric Illnesses/Hospitalizations&#13;&#10;None&#13;&#10;Operations&#13;&#10;Tonsillectomy,
age 6,&#13;&#10;Appendectomy, age 13&#13;&#10;Injuries/Accidents&#13;&#10;1998
foot laceration, 4 stitches&#13;&#10;Obstetric History&#13;&#10;G3, P3, 3
living children. Menarche age 12. Last menses 2 weeks ago.&#13;&#10;Transfusions&#13;&#10;None&#13;&#10;CURRENT
HEALTH STATUS&#13;&#10;Medications&#13;&#10;Aspirin for headaches&#13;&#10;Multivitamin
1 per day&#13;&#10;Hydrochlorothiazide 25 mg per day (x 7 years)&#13;&#10;No
herbs or supplements&#13;&#10;Allergies/Drug Reactions&#13;&#10;Ampicillin
causes rash&#13;&#10;Health Screening&#13;&#10;- Last pap smear 2000, normal.&#13;&#10;-
Normal mammogram in 2000.&#13;&#10;- Does breast self-exams monthly&#13;&#10;-
Cholesterol = 220 (in 2000
 )&#13;&#10;Diet, Sleep, Exercise&#13;&#10;- Diet – Low in calcium with
little milk or cheese. She frequently eats mid-morning and&#13;&#10;evening snacks
that are high in fat. She does follow a low salt diet.&#13;&#10;- Sleep – Generally
good, average 7 hr&#13;&#10;- Exercise – “No time”&#13;&#10;Habits&#13;&#10;-
Alcohol – Rare drink (wine) only, no history of abuse&#13;&#10;- Drugs –
Never tried illegal drugs&#13;&#10;Alternative Therapies&#13;&#10;None&#13;&#10;Patient
Centered Medicine 2&#13;&#10;PSYCHOSOCIAL HISTORY&#13;&#10;- 4 yr ago her
husband died suddenly of heart attack, leaving little savings and no&#13;&#10;insurance.&#13;&#10;-
Lives alone, recently moved to a small apartment to be near daughter&#13;&#10;- Cosmetic
saleswoman for 15 years at Sears. Likes her job but feels stressed by demands&#13;&#10;from
the new manager&#13;&#10;- Not sexually active since the death of her husband who
was her only partner&#13;&#10;- Denies d
 epression&#13;&#10;- Feels safe at work and home&#13;&#10;FAMILY HISTORY&#13;&#10;-
Mother died, 67, stroke; had varicose veins, headaches, hypertension&#13;&#10;- Father
died, 43, train accident&#13;&#10;- One brother, 56, has high blood pressure, otherwise
well&#13;&#10;- One brother, 51, apparently well except for mild arthritis&#13;&#10;-
Daughter, 23, “migraine headaches,” otherwise well&#13;&#10;- Son, 21, well&#13;&#10;-
Son, 20, well&#13;&#10;REVIEW OF SYSTEMS:&#13;&#10;General: Has gained about
10 lb in the past 4 yr, no fatigue&#13;&#10;Skin: No rashes or other changes&#13;&#10;Head:
See present illness.&#13;&#10;Eyes: Reading glasses for 5 yr, last checked 1 yr ago.
No double or blurry vision&#13;&#10;Ears: Hearing good. No tinnitus, vertigo, infections&#13;&#10;Nose,
Sinuses: occasional mild cold. No hay fever, sinus trouble&#13;&#10;Mouth and Throat:
Last to dentist 2 yr ago. Occasional canker sore&#13;&#10;Neck: No lumps, goiter,
pain&#13;&#10;Breasts
 : No lumps, pain, discharge.&#13;&#10;Respiratory: No cough, wheezing, shortness
of breath, pneumonia, tuberculosis.&#13;&#10;Cardiac: No known heart disease. No orthopnea,
chest pain, palpitations.&#13;&#10;Gastrointestinal: Appetite good; no reflux. Bowel
movement about once daily though&#13;&#10;sometimes has hard stools for 2-3 d when
especially tense; no diarrhea or&#13;&#10;bleeding. No pain, jaundice, gallbladder
or liver trouble&#13;&#10;Urinary: No frequency, dysuria, hematuria or flank pain&#13;&#10;Genitoreproductive:
Regular menstrual periods. No vaginal discharge or itch&#13;&#10;Musculoskeletal:
Mild aching low back pain often after a long day’s work; no radiation&#13;&#10;down
legs; used to do back exercises, but not now. No other joint pain&#13;&#10;Patient
Centered Medicine 2&#13;&#10;Peripheral Vascular: Varicose veins appeared in both
legs during first pregnancy. Has had&#13;&#10;swollen ankles after prolonged standing
for 10 yr; no history of&#13;&#1
 0;phlebitis or leg pain&#13;&#10;Neurological: No fainting, seizures, tremors, weakness,
or tingling. Memory good&#13;&#10;Psychiatric: No anxiety or nervousness or depression&#13;&#10;Endocrine:
No known thyroid trouble, temperature intolerance. Sweating average. No&#13;&#10;symptoms
or history of diabetes&#13;&#10;Hematologic: No easy bleeding. No anemia&#13;&#10;Adapted
from Bates’ Guide to Physical Examination and History Taking, Chapter 21, The Patient’s
Record, pp. 722-&#13;&#10;726"/>
     <org.apache.ctakes.typesystem.type.structured.DocumentID _indexed="1" _id="1" documentID="doc1_07543210_sample_unknown.txt"/>
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     <org.apache.ctakes.typesystem.type.textspan.Segment _indexed="1" _id="15" _ref_sofa="3"
begin="0" end="4444" id="SIMPLE_SEGMENT"/>

Modified: ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_current.txt.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_current.txt.xml?rev=1491916&r1=1491915&r2=1491916&view=diff
==============================================================================
--- ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_current.txt.xml
(original)
+++ ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_current.txt.xml
Tue Jun 11 19:23:17 2013
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <CAS version="2">
-    <uima.cas.Sofa _indexed="0" _id="3" sofaNum="1" sofaID="_InitialView" mimeType="text"
sofaString="Patient Centered Medicine 2&#13;&#10;Revised: 7/27/99&#13;&#10;DATA
BASE: SAMPLE HISTORY&#13;&#10;IDENTIFYING DATA &#13;&#10;CM is a 45-year-old,
widowed, white saleswoman, born in the U.S.&#13;&#10;CHIEF COMPLAINT&#13;&#10;�Bad
headaches�&#13;&#10;HISTORY OF PRESENT ILLNESS (HPI, Problem by problem)&#13;&#10;For
about 3 months Mrs. M. has been increasingly troubled by headaches that are rightsided,&#13;&#10;usually
throbbing, and can range from mild to moderately severe. Typically her&#13;&#10;headaches
are rated at 4 over 10. She recently had a severe headache that she rated 8 over&#13;&#10;10
and missed work because of this headache. This was associated with nausea and&#13;&#10;vomiting.
Headaches have increased in frequency and now average once a wk. The&#13;&#10;headaches
usually last from 2 to 4 hours. However, the most recent headache, which was&#13;&#10;the
  most severe, lasted almost 8 hours. During a headache bright lights bother her and she&#13;&#10;just
wants to lie down in a dark quiet room and fall asleep. Aspirin provides little relief.&#13;&#10;She
has not noticed any association with food or drink. She has no other related symptoms,&#13;&#10;such
as fever, dental pain, weakness, numbness or loss of vision. There is no history of head&#13;&#10;injury
or trauma. She remembers having a similar kind of headache with nausea and&#13;&#10;vomiting
that began at age 15, recurred through her mid-20s, then diminished to one every&#13;&#10;2
or 3 months and disappeared.&#13;&#10;Patient Perspective&#13;&#10;She thinks
her headaches may be like those in the past. However, she now has high blood&#13;&#10;pressure
and is concerned because her mother had high blood pressure and died of a&#13;&#10;stroke.
She is also concerned that they make her irritable with her family.&#13;&#10;PAST
MEDICAL HISTORY&#13;&#10;Significant Childhood Il
 lnesses&#13;&#10;Only measles and chickenpox&#13;&#10;Immunizations&#13;&#10;Last
tetanus 1998&#13;&#10;Flu vaccine last November&#13;&#10;Adult Illnesses/Hospitalizations&#13;&#10;-
Kidney infection 1982 treated with ampicillin and developed a generalized rash.&#13;&#10;-
Hypertension x 7 years, well controlled with home BPs normally 120-130/low 80s&#13;&#10;Patient
Centered Medicine 2&#13;&#10;2 Revised: 7/27/99&#13;&#10;Psychiatric Illnesses/Hospitalizations&#13;&#10;None&#13;&#10;Operations&#13;&#10;Tonsillectomy,
age 6,&#13;&#10;Appendectomy, age 13&#13;&#10;Injuries/Accidents&#13;&#10;1998
foot laceration, 4 stitches&#13;&#10;Obstetric History&#13;&#10;G3, P3, 3
living children. Menarche age 12. Last menses 2 weeks ago.&#13;&#10;Transfusions&#13;&#10;None&#13;&#10;CURRENT
HEALTH STATUS&#13;&#10;Medications&#13;&#10;Aspirin for headaches&#13;&#10;Multivitamin
1 per day&#13;&#10;Hydrochlorothiazide 25 mg per day (x 7 years)&#13;&#10;No
herbs or supplements&#13;&#10;Aller
 gies/Drug Reactions&#13;&#10;Ampicillin causes rash&#13;&#10;Health Screening&#13;&#10;-
Last pap smear 2000, normal.&#13;&#10;- Normal mammogram in 2000.&#13;&#10;-
Does breast self-exams monthly&#13;&#10;- Cholesterol = 220 (in 2000)&#13;&#10;Diet,
Sleep, Exercise&#13;&#10;- Diet � Low in calcium with little milk or cheese.
She frequently eats mid-morning and&#13;&#10;evening snacks that are high in fat.
She does follow a low salt diet.&#13;&#10;- Sleep � Generally good, average 7
hr&#13;&#10;- Exercise � �No time�&#13;&#10;Habits&#13;&#10;-
Tobacco � 1 pack cigs per day from age 18&#13;&#10;- Alcohol � Rare drink
(wine) only, no history of abuse&#13;&#10;- Drugs � Never tried illegal drugs&#13;&#10;Alternative
Therapies&#13;&#10;None&#13;&#10;Patient Centered Medicine 2&#13;&#10;PSYCHOSOCIAL
HISTORY&#13;&#10;- 4 yr ago her husband died suddenly of heart attack, leaving little
savings and no&#13;&#10;insurance.&#13;&#10;- Lives alone
 , recently moved to a small apartment to be near daughter&#13;&#10;- Cosmetic saleswoman
for 15 years at Sears. Likes her job but feels stressed by demands&#13;&#10;from the
new manager&#13;&#10;- Not sexually active since the death of her husband who was
her only partner&#13;&#10;- Denies depression&#13;&#10;- Feels safe at work
and home&#13;&#10;FAMILY HISTORY&#13;&#10;- Mother died, 67, stroke; had varicose
veins, headaches, hypertension&#13;&#10;- Father died, 43, train accident&#13;&#10;-
One brother, 56, has high blood pressure, otherwise well&#13;&#10;- One brother, 51,
apparently well except for mild arthritis&#13;&#10;- Daughter, 23, �migraine
headaches,� otherwise well&#13;&#10;- Son, 21, well&#13;&#10;- Son, 20,
well&#13;&#10;REVIEW OF SYSTEMS:&#13;&#10;General: Has gained about 10 lb
in the past 4 yr, no fatigue&#13;&#10;Skin: No rashes or other changes&#13;&#10;Head:
See present illness.&#13;&#10;Eyes: Reading glasses for 5 yr, last checked 1 yr ago.
N
 o double or blurry vision&#13;&#10;Ears: Hearing good. No tinnitus, vertigo, infections&#13;&#10;Nose,
Sinuses: occasional mild cold. No hay fever, sinus trouble&#13;&#10;Mouth and Throat:
Last to dentist 2 yr ago. Occasional canker sore&#13;&#10;Neck: No lumps, goiter,
pain&#13;&#10;Breasts: No lumps, pain, discharge.&#13;&#10;Respiratory: No
cough, wheezing, shortness of breath, pneumonia, tuberculosis.&#13;&#10;Cardiac: No
known heart disease. No orthopnea, chest pain, palpitations.&#13;&#10;Gastrointestinal:
Appetite good; no reflux. Bowel movement about once daily though&#13;&#10;sometimes
has hard stools for 2-3 d when especially tense; no diarrhea or&#13;&#10;bleeding.
No pain, jaundice, gallbladder or liver trouble&#13;&#10;Urinary: No frequency, dysuria,
hematuria or flank pain&#13;&#10;Genitoreproductive: Regular menstrual periods. No
vaginal discharge or itch&#13;&#10;Musculoskeletal: Mild aching low back pain often
after a long day�s work; no radiation&#13;&
 #10;down legs; used to do back exercises, but not now. No other joint pain&#13;&#10;Patient
Centered Medicine 2&#13;&#10;Peripheral Vascular: Varicose veins appeared in both
legs during first pregnancy. Has had&#13;&#10;swollen ankles after prolonged standing
for 10 yr; no history of&#13;&#10;phlebitis or leg pain&#13;&#10;Neurological:
No fainting, seizures, tremors, weakness, or tingling. Memory good&#13;&#10;Psychiatric:
No anxiety or nervousness or depression&#13;&#10;Endocrine: No known thyroid trouble,
temperature intolerance. Sweating average. No&#13;&#10;symptoms or history of diabetes&#13;&#10;Hematologic:
No easy bleeding. No anemia&#13;&#10;Adapted from Bates� Guide to Physical Examination
and History Taking, Chapter 21, The Patient�s Record, pp. 722-&#13;&#10;726"/>
+    <uima.cas.Sofa _indexed="0" _id="3" sofaNum="1" sofaID="_InitialView" mimeType="text"
sofaString="Patient Centered Medicine 2&#13;&#10;Revised: 7/27/99&#13;&#10;DATA
BASE: SAMPLE HISTORY&#13;&#10;IDENTIFYING DATA &#13;&#10;CM is a 45-year-old,
widowed, white saleswoman, born in the U.S.&#13;&#10;CHIEF COMPLAINT&#13;&#10;“Bad
headaches”&#13;&#10;HISTORY OF PRESENT ILLNESS (HPI, Problem by problem)&#13;&#10;For
about 3 months Mrs. M. has been increasingly troubled by headaches that are rightsided,&#13;&#10;usually
throbbing, and can range from mild to moderately severe. Typically her&#13;&#10;headaches
are rated at 4 over 10. She recently had a severe headache that she rated 8 over&#13;&#10;10
and missed work because of this headache. This was associated with nausea and&#13;&#10;vomiting.
Headaches have increased in frequency and now average once a wk. The&#13;&#10;headaches
usually last from 2 to 4 hours. However, the most recent headache, which was&#13;&#10;the
  most severe, lasted almost 8 hours. During a headache bright lights bother her and she&#13;&#10;just
wants to lie down in a dark quiet room and fall asleep. Aspirin provides little relief.&#13;&#10;She
has not noticed any association with food or drink. She has no other related symptoms,&#13;&#10;such
as fever, dental pain, weakness, numbness or loss of vision. There is no history of head&#13;&#10;injury
or trauma. She remembers having a similar kind of headache with nausea and&#13;&#10;vomiting
that began at age 15, recurred through her mid-20s, then diminished to one every&#13;&#10;2
or 3 months and disappeared.&#13;&#10;Patient Perspective&#13;&#10;She thinks
her headaches may be like those in the past. However, she now has high blood&#13;&#10;pressure
and is concerned because her mother had high blood pressure and died of a&#13;&#10;stroke.
She is also concerned that they make her irritable with her family.&#13;&#10;PAST
MEDICAL HISTORY&#13;&#10;Significant Childhood Il
 lnesses&#13;&#10;Only measles and chickenpox&#13;&#10;Immunizations&#13;&#10;Last
tetanus 1998&#13;&#10;Flu vaccine last November&#13;&#10;Adult Illnesses/Hospitalizations&#13;&#10;-
Kidney infection 1982 treated with ampicillin and developed a generalized rash.&#13;&#10;-
Hypertension x 7 years, well controlled with home BPs normally 120-130/low 80s&#13;&#10;Patient
Centered Medicine 2&#13;&#10;2 Revised: 7/27/99&#13;&#10;Psychiatric Illnesses/Hospitalizations&#13;&#10;None&#13;&#10;Operations&#13;&#10;Tonsillectomy,
age 6,&#13;&#10;Appendectomy, age 13&#13;&#10;Injuries/Accidents&#13;&#10;1998
foot laceration, 4 stitches&#13;&#10;Obstetric History&#13;&#10;G3, P3, 3
living children. Menarche age 12. Last menses 2 weeks ago.&#13;&#10;Transfusions&#13;&#10;None&#13;&#10;CURRENT
HEALTH STATUS&#13;&#10;Medications&#13;&#10;Aspirin for headaches&#13;&#10;Multivitamin
1 per day&#13;&#10;Hydrochlorothiazide 25 mg per day (x 7 years)&#13;&#10;No
herbs or supplements&#13;&#10;Aller
 gies/Drug Reactions&#13;&#10;Ampicillin causes rash&#13;&#10;Health Screening&#13;&#10;-
Last pap smear 2000, normal.&#13;&#10;- Normal mammogram in 2000.&#13;&#10;-
Does breast self-exams monthly&#13;&#10;- Cholesterol = 220 (in 2000)&#13;&#10;Diet,
Sleep, Exercise&#13;&#10;- Diet – Low in calcium with little milk or cheese.
She frequently eats mid-morning and&#13;&#10;evening snacks that are high in fat.
She does follow a low salt diet.&#13;&#10;- Sleep – Generally good, average 7
hr&#13;&#10;- Exercise – “No time”&#13;&#10;Habits&#13;&#10;-
Tobacco – 1 pack cigs per day from age 18&#13;&#10;- Alcohol – Rare drink
(wine) only, no history of abuse&#13;&#10;- Drugs – Never tried illegal drugs&#13;&#10;Alternative
Therapies&#13;&#10;None&#13;&#10;Patient Centered Medicine 2&#13;&#10;PSYCHOSOCIAL
HISTORY&#13;&#10;- 4 yr ago her husband died suddenly of heart attack, leaving little
savings and no&#13;&#10;insurance.&#13;&#10;- Lives alone
 , recently moved to a small apartment to be near daughter&#13;&#10;- Cosmetic saleswoman
for 15 years at Sears. Likes her job but feels stressed by demands&#13;&#10;from the
new manager&#13;&#10;- Not sexually active since the death of her husband who was
her only partner&#13;&#10;- Denies depression&#13;&#10;- Feels safe at work
and home&#13;&#10;FAMILY HISTORY&#13;&#10;- Mother died, 67, stroke; had varicose
veins, headaches, hypertension&#13;&#10;- Father died, 43, train accident&#13;&#10;-
One brother, 56, has high blood pressure, otherwise well&#13;&#10;- One brother, 51,
apparently well except for mild arthritis&#13;&#10;- Daughter, 23, “migraine
headaches,” otherwise well&#13;&#10;- Son, 21, well&#13;&#10;- Son, 20,
well&#13;&#10;REVIEW OF SYSTEMS:&#13;&#10;General: Has gained about 10 lb
in the past 4 yr, no fatigue&#13;&#10;Skin: No rashes or other changes&#13;&#10;Head:
See present illness.&#13;&#10;Eyes: Reading glasses for 5 yr, last checked 1 yr ago.
N
 o double or blurry vision&#13;&#10;Ears: Hearing good. No tinnitus, vertigo, infections&#13;&#10;Nose,
Sinuses: occasional mild cold. No hay fever, sinus trouble&#13;&#10;Mouth and Throat:
Last to dentist 2 yr ago. Occasional canker sore&#13;&#10;Neck: No lumps, goiter,
pain&#13;&#10;Breasts: No lumps, pain, discharge.&#13;&#10;Respiratory: No
cough, wheezing, shortness of breath, pneumonia, tuberculosis.&#13;&#10;Cardiac: No
known heart disease. No orthopnea, chest pain, palpitations.&#13;&#10;Gastrointestinal:
Appetite good; no reflux. Bowel movement about once daily though&#13;&#10;sometimes
has hard stools for 2-3 d when especially tense; no diarrhea or&#13;&#10;bleeding.
No pain, jaundice, gallbladder or liver trouble&#13;&#10;Urinary: No frequency, dysuria,
hematuria or flank pain&#13;&#10;Genitoreproductive: Regular menstrual periods. No
vaginal discharge or itch&#13;&#10;Musculoskeletal: Mild aching low back pain often
after a long day’s work; no radiation&#13;&
 #10;down legs; used to do back exercises, but not now. No other joint pain&#13;&#10;Patient
Centered Medicine 2&#13;&#10;Peripheral Vascular: Varicose veins appeared in both
legs during first pregnancy. Has had&#13;&#10;swollen ankles after prolonged standing
for 10 yr; no history of&#13;&#10;phlebitis or leg pain&#13;&#10;Neurological:
No fainting, seizures, tremors, weakness, or tingling. Memory good&#13;&#10;Psychiatric:
No anxiety or nervousness or depression&#13;&#10;Endocrine: No known thyroid trouble,
temperature intolerance. Sweating average. No&#13;&#10;symptoms or history of diabetes&#13;&#10;Hematologic:
No easy bleeding. No anemia&#13;&#10;Adapted from Bates’ Guide to Physical Examination
and History Taking, Chapter 21, The Patient’s Record, pp. 722-&#13;&#10;726"/>
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Modified: ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_past_smoker.txt.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_past_smoker.txt.xml?rev=1491916&r1=1491915&r2=1491916&view=diff
==============================================================================
--- ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_past_smoker.txt.xml
(original)
+++ ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_past_smoker.txt.xml
Tue Jun 11 19:23:17 2013
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <CAS version="2">
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sofaString="Patient Centered Medicine 2&#13;&#10;Revised: 2/7/10&#13;&#10;DATA
BASE: SAMPLE HISTORY&#13;&#10;IDENTIFYING DATA &#13;&#10;CM is a 45-year-old,
widowed, white saleswoman, born in the U.S.&#13;&#10;CHIEF COMPLAINT&#13;&#10;�Insomnia�&#13;&#10;HISTORY
OF PRESENT ILLNESS &#13;&#10;She is also concerned that they make her irritable with
her family.  She isn't sleeping well, since she quit smoking cigs.&#13;&#10;PAST MEDICAL
HISTORY&#13;&#10;Significant Childhood Illnesses&#13;&#10;Only measles and
chickenpox&#13;&#10;Immunizations&#13;&#10;Last tetanus 1998&#13;&#10;Flu
vaccine last November&#13;&#10;Adult Illnesses/Hospitalizations&#13;&#10;-
Kidney infection 1982 treated with ampicillin and developed a generalized rash.&#13;&#10;-
Hypertension x 7 years, well controlled with home BPs normally 120-130/low 80s&#13;&#10;Patient
Centered Medicine 2&#13;&#10;Psychiatric 
 Illnesses/Hospitalizations&#13;&#10;None&#13;&#10;Operations&#13;&#10;Tonsillectomy,
age 6,&#13;&#10;Appendectomy, age 13&#13;&#10;Habits&#13;&#10;tobacco
: quit.&#13;&#10;Injuries/Accidents&#13;&#10;1998 foot laceration, 4 stitches&#13;&#10;Obstetric
History&#13;&#10;G3, P3, 3 living children. Menarche age 12. Last menses 2 weeks ago.&#13;&#10;Transfusions&#13;&#10;None&#13;&#10;"/>
+    <uima.cas.Sofa _indexed="0" _id="3" sofaNum="1" sofaID="_InitialView" mimeType="text"
sofaString="Patient Centered Medicine 2&#13;&#10;Revised: 2/7/10&#13;&#10;DATA
BASE: SAMPLE HISTORY&#13;&#10;IDENTIFYING DATA &#13;&#10;CM is a 45-year-old,
widowed, white saleswoman, born in the U.S.&#13;&#10;CHIEF COMPLAINT&#13;&#10;“Insomnia”&#13;&#10;HISTORY
OF PRESENT ILLNESS &#13;&#10;She is also concerned that they make her irritable with
her family.  She isn't sleeping well, since she quit smoking cigs.&#13;&#10;PAST MEDICAL
HISTORY&#13;&#10;Significant Childhood Illnesses&#13;&#10;Only measles and
chickenpox&#13;&#10;Immunizations&#13;&#10;Last tetanus 1998&#13;&#10;Flu
vaccine last November&#13;&#10;Adult Illnesses/Hospitalizations&#13;&#10;-
Kidney infection 1982 treated with ampicillin and developed a generalized rash.&#13;&#10;-
Hypertension x 7 years, well controlled with home BPs normally 120-130/low 80s&#13;&#10;Patient
Centered Medicine 2&#13;&#10;Psychiatric 
 Illnesses/Hospitalizations&#13;&#10;None&#13;&#10;Operations&#13;&#10;Tonsillectomy,
age 6,&#13;&#10;Appendectomy, age 13&#13;&#10;Habits&#13;&#10;tobacco
: quit.&#13;&#10;Injuries/Accidents&#13;&#10;1998 foot laceration, 4 stitches&#13;&#10;Obstetric
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