Return-Path: X-Original-To: apmail-ctakes-commits-archive@www.apache.org Delivered-To: apmail-ctakes-commits-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 35A48F814 for ; Tue, 2 Apr 2013 17:46:31 +0000 (UTC) Received: (qmail 71875 invoked by uid 500); 2 Apr 2013 17:46:30 -0000 Delivered-To: apmail-ctakes-commits-archive@ctakes.apache.org Received: (qmail 71831 invoked by uid 500); 2 Apr 2013 17:46:29 -0000 Mailing-List: contact commits-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: dev@ctakes.apache.org Delivered-To: mailing list commits@ctakes.apache.org Received: (qmail 71763 invoked by uid 99); 2 Apr 2013 17:46:29 -0000 Received: from nike.apache.org (HELO nike.apache.org) (192.87.106.230) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 02 Apr 2013 17:46:29 +0000 X-ASF-Spam-Status: No, hits=-2000.0 required=5.0 tests=ALL_TRUSTED,LOTS_OF_MONEY,MONEY_FRAUD_3 X-Spam-Check-By: apache.org Received: from [140.211.11.4] (HELO eris.apache.org) (140.211.11.4) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 02 Apr 2013 17:45:58 +0000 Received: from eris.apache.org (localhost [127.0.0.1]) by eris.apache.org (Postfix) with ESMTP id 3A12B2388BEF; Tue, 2 Apr 2013 17:45:05 +0000 (UTC) Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Subject: svn commit: r1463641 [10/42] - in /ctakes/trunk: ctakes-assertion-res/ ctakes-assertion-res/.settings/ ctakes-assertion-res/src/ ctakes-assertion-res/src/main/ ctakes-assertion-res/src/main/resources/ ctakes-assertion-res/src/main/resources/org/ ctakes... Date: Tue, 02 Apr 2013 17:44:41 -0000 To: commits@ctakes.apache.org From: chenpei@apache.org X-Mailer: svnmailer-1.0.8-patched Message-Id: <20130402174505.3A12B2388BEF@eris.apache.org> X-Virus-Checked: Checked by ClamAV on apache.org Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/hyphenated.txt URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/hyphenated.txt?rev=1463641&view=auto ============================================================================== --- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/hyphenated.txt (added) +++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/hyphenated.txt Tue Apr 2 17:41:30 2013 @@ -0,0 +1,3922 @@ +follow-up|246528 +x-ray|217606 +follow-up|73583 +x-rays|67434 +24-hour|28535 +over-the-counter|28281 +one-half|25623 +long-term|23988 +long-standing|18108 +right-sided|17737 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+anti-ds-dna|85 +one-to-two|85 +rolls-posterior|85 +chemo-radiation|85 +a-a|85 +pcn-hives|85 +neuropathic-type|85 +self-cutting|85 +6-hr|85 +1-west|84 +scale-third|84 +pre-olt|84 +high-flow|84 +re-styletted|84 +e-stim|84 +problem-solve|84 +post-biopsy|84 +dime-sized|84 +stem-cell|84 +school-related|84 +non-b|84 +six-week|84 +well-adjusted|84 +cross-bite|84 +osi-774|84 +b-50|84 +ring-enhancing|83 +units-functional|83 +bi-est|83 +0915-patient|83 +post-therapy|83 +q4-6hrs|83 +four-drug|83 +3-moderate|83 +hemoccult-positive|83 +cough-variant|83 +three-dimensional|83 +inventory-2|83 +18-year|83 +thick-walled|83 +allergies-no|83 +tobacco-quit|83 +four-year-old|83 +b-cells|82 +r-pac|82 +fellow-physician|82 +hard-working|82 +4-vessel|82 +seizure-type|82 +tavist-d|82 +large-bore|82 +end-of-study|82 +uro-gyn|82 +contra-indicated|82 +mother-alive|82 +re-enforced|82 +catapres-tts-2|82 +jan-17-02|82 +four-year|82 +pregnancy-induced|82 +amoxicillin-hives|81 +watch-and-wait|81 +muir-torre|81 +re-wrapped|81 +non-obstructing|81 +20-pack-years|81 +ii-v|81 +4-wheeled|81 +self-breast|81 +low-sugar|81 +500-cc|81 +1415-patient|81 +non-a|81 +re-order|81 +direct-current|81 +dhea-s|81 +straight-leg|81 +one-piece|81 +20-plus|81 +near-miss|81 +maxzide-25|81 +g-6-pd|81 +cross-over|81 +normochromic-normocytic|80 +single-level|80 +year-long|80 +soon-to-be|80 +port-a-cath|80 +t-gel|80 +on-going|80 +4-pudding|80 +self-employed|80 +call-pt|80 +t-cells|80 +pre-ordered|80 +hbv-hib|80 +high-volume|80 +double-vision|80 +jan-10-02|80 +l2-l5|79 +transfusion-dependent|79 +two-weeks|79 +re-dressed|79 +asthma-type|79 +16-mm|79 +self-sufficient|79 +pre-evening|79 +measles-mumps-rubella|79 +n-0-n-0|79 +non-positional|79 +visual-motor|79 +obsessive-compulsive|79 +30-pack-years|79 +one-to-one|79 +advil-prn|79 +re-established|79 +motor-vehicle|79 +anti-mitochondrial|79 +off-study|79 +high-potassium|79 +bowel-type|78 +chronic-appearing|78 +over-learned|78 +every-three-month|78 +seven-year-old|78 +call-patient|78 +9-year|78 +2-3/day|78 +diabetes-related|78 +non-skid|78 +12-day|78 +0.25-mg|78 +six-year-old|78 +adjustment-related|78 +noninsulin-requiring|78 +finger-to-nose|78 +anti-static|78 +k-complexes|78 +pre-participation|77 +2-piece|77 +musculoskeletal-type|77 +1-inch|77 +false-positive|77 +self-disclosure|77 +x2-3|77 +er-pr|77 +open-heart|77 +off-pump|77 +below-mentioned|77 +g-0|77 +med-surg|77 +sit-up|77 +vancomycin-resistant|77 +gerd-type|77 +pylori-positive|77 +three-monthly|77 +over-use|77 +resident-physicians|77 +5-hydroxyindoleacetic|77 +post-doctoral|76 +three-to-four|76 +extended-care|76 +fragrance-free|76 +guaiac-positive|76 +low-sweet|76 +insulin-required|76 +call-in|76 +end-plate|76 +1-us|76 +ten-pack-year|76 +early-stage|76 +height-50%|76 +alzheimer's-type|76 +vice-like|76 +two-plus|76 +alcohol-containing|76 +c-pap|76 +pink-tinged|76 +t-tubes|76 +nine-day|76 +multi-dose|76 +west-6a|76 +monday-wednesday-friday|76 +oxy-contin|76 +radio-guided|76 +convex-it|75 +bi-monthly|75 +500-1000mg|75 +saast-ii|75 +skin-colored|75 +96-hour|75 +ms-related|75 +two-drug|75 +antibiotic-associated|75 +crampy-type|75 +wax-wane|75 +t5-6|75 +hailey-hailey|75 +foot-drop|75 +self-rating|75 +ten-year-old|75 +c5-7|75 +second-stage|75 +st-t-wave|75 +re-admission|75 +30-mm|75 +q-fever|74 +20-30min|74 +substance-induced|74 +pre-meal|74 +single-chamber|74 +anti-edema|74 +35-minute|74 +p-a|74 +site-okay|74 +11-month|74 +12-day-old|74 +co-enzyme|74 +abrams-griffith|74 +slim-fast|74 +d-dimer|74 +sturge-weber|74 +cut-to-fit|73 +air-fill|73 +perceptual-organizational|73 +c2-c3|73 +flu-no|73 +test-taking|73 +abnormal-appearing|73 +gluten-sensitive|73 +green-yellow|73 +30-minute|73 +over-the-counter|73 +self-manage|73 +six-weeks|73 +3-4x|73 +sleep-onset|73 +t-score|73 +borderline-low|73 +high-fluid|73 +kick-in|73 +acute-on-chronic|73 +off-label|72 +community-based|72 +chang-miller's|72 +drug-free|72 +wire-localized|72 +self-harmful|72 +pre-breakfast|72 +over-response|72 +lange-collett|72 +pre-transplant|72 +exam-routinely|72 +crmp-5|72 +cardizem-cd|72 +100-pound|72 +semi-solid|72 +long-lived|72 +poorly-controlled|72 +caffeine:0-2|72 +whiplash-type|71 +school-age|71 +seven-week|71 +intra-epithelial|71 +two-dose|71 +cystic-appearing|71 +alk-phos|71 +ten-minute|71 +jan-07-02|71 +12-step|71 +three-times-a-week|71 +cramp-like|71 +re-irradiation|71 +ice-cream|71 +co-a|71 +self-affirming|71 +1-east|71 +ast-bilirubin|71 +type-2|71 +under-response|71 +radio-iodine|71 +post-transfusion|71 +post-stress|71 +b-symptoms|71 +mid-thigh|71 +re-contact|71 +step-daughter|71 +dri-aid|71 +12.5-mg|71 +re-consult|70 +0815-patient|70 +c-peptide|70 +gi/small-bowel|70 +three-phase|70 +n-type|70 +non-neurologic|70 +third-year|70 +post-polio|70 +valgus-producing|70 +jan-14-02|70 +no-showed|70 +four-wheel|70 +anti-incontinence|70 +charcot-marie|70 +two-months|70 +ls-spine|70 +cvlt-ii|70 +15-item|70 +note-office|70 +1x12-cm|70 +blister-like|70 +four-corner|70 +2.1-cm|70 +pre-hospitalization|70 +stress-dose|69 +non-hodgkin|69 +recently-diagnosed|69 +ob-gyn|69 +nurse-only|69 +triple-drug|69 +aerobic-type|69 +fragile-x|69 +angina-type|69 +sub-acute|69 +height-75%|69 +5-mechanical|69 +mcmi-iii|69 +four-vessel|69 +20-ounce|69 +cortisone-type|69 +pepto-bismol|69 +p-waves|69 +catapres-tts-1|69 +mic-key|69 +alpha-blocker|68 +mother-in-law's|68 +once-a-month|68 +forty-five|68 +t9-10|68 +post-radioiodine|68 +post-chemotherapy|68 +sit-down|68 +interleukin-12|68 +binge-eating|68 +darvocet-n-100|68 +first-stage|68 +tts-2|68 +penicillin-rash|68 +post-partum|68 +twice-married|68 +sub-q|68 +1015-patient|68 +quarter-sized|68 +to-be-learned|68 +sugar-restricted|68 +battery-third|68 +stiff-man|68 +self-cues|68 +front-wheel|68 +follows-up|67 +16-month|67 +visit-dr|67 +re-instituted|67 +double-contrast|67 +mechanical-type|67 +pre-liver|67 +roll-over|67 +smoke-no|67 +non-hodgkins|67 +self-deprecating|67 +amiodarone-induced|67 +q4-6hr|67 +similar-type|67 +non-occlusive|67 +neuro-urologic|67 +machine-o.k|67 +female-other|67 +non-caseating|67 +12-ounce|67 +needle-like|67 +wide-range|67 +one-time-only|67 +peri-ulcer|67 +out-of-control|67 +o-positive|67 +mag-ox|67 +re-addressed|66 +west-11|66 +24-month|66 +p-0|66 +great-aunts|66 +fem-pop|66 +body-wide|66 +in-breast|66 +2.0-cm|66 +medtronic-hall|66 +anti-gm1|66 +disease-related|66 +varicella-zoster|66 +great-grandmother|66 +anti-rnp|66 +steroid-responsive|66 +short-arc|66 +a-positive|66 +dose-pak|66 +irb-approved|66 +similar-appearing|65 +16-week|65 +swan-neck|65 +hemoccult-positive|65 +tension-free|65 +ashkenazi-jewish|65 +well-fitting|65 +c-kit|65 +mid-shaft|65 +codeine-nausea|65 +sun-protection|65 +time-out/privileges|65 +anti-migraine|65 +test-out|65 +well-informed|65 +3-mg|65 +pre-cancerous|65 +low-anterior|65 +jan-09-02|65 +steri-strip|65 +q6-8h|65 +2-y-o|65 +l3-s1|65 +not-too-distant|65 +high-normal|65 +l-s|65 +slo-mag|65 +re-evaluation|65 +three-step|64 +anti-coagulated|64 +non-dialysis|64 +somatosensory-evoked|64 +poorly-defined|64 +humate-p|64 +l-2|64 +six-minute|64 +32-mm|64 +12-pack-year|64 +ast-alt-bilirubin|64 +15-cm|64 +non-st-segment|64 +broad-band|64 +re-institution|64 +drop-off|64 +s-100|64 +loop-o-gram|64 +institutional-style|64 +9-pound|64 +e-coli|64 +sub-occipital|64 +break-up|64 +hand-written|64 +infra-auricular|64 +5-y-o|64 +0.9-cm|64 +moderate-sized|64 +phos-lo|64 +multi-directional|64 +average-sized|64 +side-stepping|63 +tobacco-free|63 +re-measured|63 +primary-care|63 +0.7-cm|63 +wart-like|63 +iron-deficient|63 +1045-patient|63 +visual-evoked|63 +h-2|63 +bi-level|63 +mid-sternal|63 +non-myeloablative|63 +re-insertion|63 +cpk-mb|63 +three-part|63 +l6-s1|63 +l2-5|63 +fer-in-sol|63 +t-10|63 +1.9-cm|63 +g-11|63 +ortho-tricyclen|63 +mastery-related|63 +reflux-associated|63 +flu-2001|63 +pre-supper|63 +14-day-old|63 +half-day|62 +smoke-no|62 +hand-dominant|62 +pre-dinner|62 +30-month|62 +3-hour|62 +attention-deficit/hyperactivity|62 +habit-forming|62 +2-nectar|62 +4-pound|62 +steri-stripped|62 +1310-patient|62 +l1-l4|62 +her-2/neu-negative|62 +interferon-based|62 +tylenol-prn|62 +2-g|62 +dtp-hib|62 +more-recommendations|62 +high-resolution|62 +25-50mg|62 +t-gel|62 +co-dependency|62 +co-therapists|62 +maroon-colored|62 +ace-i|62 +self-statement|62 +after-school|62 +b-183-01|62 +migraine-specific|62 +os-cal|62 +0945-patient|62 +sway-referenced)|61 +scl-70|61 +papp-a|61 +hely-weber|61 +t-11|61 +sleep-disordered|61 +96100a-52|61 +note-test|61 +re-activation|61 +large-sized|61 +t-ball|61 +pre-vasectomy|61 +seat-belt|61 +6-a|61 +viral-like|61 +hematology-oncology|61 +post-secondary|60 +ct-based|60 +ex-fiance|60 +carbidopa-levodopa|60 +7.5-mg|60 +ces-d|60 +aorto-right|60 +10-80-cm|60 +ma-min|60 +ground-level|60 +tid-qid|60 +street-drug|60 +3-1/2-inch|60 +mccune-albright|60 +re-scheduled|60 +fronto-temporal|60 +clia-approved|60 +four-beat|60 +parent-teacher|60 +fine-tuning|60 +anti-tuberculous|60 +home-schooled|60 +muscle-invasive|60 +120-pack-year|60 +peri-procedure|60 +mg-325|60 +s-i|60 +c3-c6|60 +ten-year-old|60 +caffeine-free|60 +osteo-bi-flex|60 +mid-lumbar|60 +oppositional-defiant|60 +5-week-old|60 +k-scope|60 +run-off|60 +respiratory-related|60 +young-fadok's|60 +all-or-nothing|60 +semi-retired|59 +nor-q.d|59 +hemi-trigone|59 +self-catheterizing|59 +note-not|59 +may-thurner|59 +re-excise|59 +step-up|59 +forty-eight|59 +post-nasal|59 +3.8-cm|59 +re-introduce|59 +high-arched|59 +latex-yes|59 +4-west|59 +weight-75%|59 +wearing-off|59 +q-tips|59 +claudication-type|59 +brown-sequard|59 +cognitive-behavioral|59 +crown-rump|58 +self-care|58 +90-minute|58 +six-vessel|58 +weight-50%|58 +hla-b|58 +inhibitor-induced|58 +e-12|58 +acid-fast|58 +45-pound|58 +non-throbbing|58 +60-min|58 +exertion-related|58 +ok-a'd|58 +11-cm|58 +self-taper|58 +rate-related|58 +nephrotic-range|58 +circumference-75%|58 +effexor-xr|58 +acid-suppressive|58 +co-signed|58 +pre-clinic|57 +gm-1|57 +maturity-onset|57 +month-and-a-half|57 +nectar-thick|57 +scd-heft|57 +brandt-daroff|57 +pre-clinic|57 +well-behaved|57 +k-wires|57 +21-mg|57 +east-17|57 +c-kit|57 +e-9|57 +glucosamine-chondroitin|57 +skull-based|57 +q-bid|57 +5-pack-year|57 +v-70|57 +50-60mm*h2o|57 +four-part|57 +neuro-oncology|56 +caffeine-3-4|56 +19-mm|56 +eight-ounce|56 +carry-over|56 +ice-pick|56 +chemical-type|56 +re-iterated|56 +w-none|56 +history-taking|56 +q4-6hours|56 +high-stress|56 +neuro-oncologist|56 +angina-like|56 +normal-looking|56 +10-cc|56 +p-32|56 +bdi-fast|56 +jan-04-02|56 +insulin-providing|56 +benign-looking|56 +0.6-cm|56 +by-pass|56 +a-fib|55 +higher-level|55 +fair-skinned|55 +comp-evaluation|55 +supra-acetabular|55 +ill-effects|55 +poly-vi-sol|55 +co-leader|55 +sacro-iliac|55 +sinus-related|55 +protein-c|55 +l2-4|55 +air-filled|55 +30-minutes|55 +self-care/home|55 +self-esteem|55 +self-deprecatory|55 +make-a-wish|55 +austin-moore|55 +semi-truck|55 +scl-90r|55 +t-7|55 +waist-high|55 +50-pack-years|55 +re-culture|55 +stuck-on|55 +children-third|55 +three-fold|55 +non-revealing|55 +pylorus-preserving|55 +kayser-fleischer|54 +circumference-50%|54 +bwx-rays|54 +medq-939|54 +flu-type|54 +high-protein|54 +controlled-release|54 +anti-centromere|54 +2-week-old|54 +breast-related|54 +13-day-old|54 +90-minute|54 +cirrhotic-stage|54 +x3-4|54 +aml-m2|54 +20-mm|54 +aci-jel|54 +problem-focused|54 +self-centered|54 +mg/24-hours|54 +non-relief|54 +platinum-based|54 +pre-surgery|54 +atypical-appearing|54 +9-pack|54 +pr-negative|54 +rate-responsive|54 +pre-lunch|54 +anti-dandruff|53 +o-509-93-02|53 +c4-6|53 +post-cholecystectomy|53 +hour-and-a-half|53 +post-splenectomy|53 +thirty-pack-year|53 +7-month|53 +twenty-three|53 +high-top|53 +one-pack|53 +q3-4h|53 +l-dopa|53 +problem-solved|53 +large-vessel|53 +re-applied|53 +loose-fitting|53 +isovue-200|53 +l-arginine|53 +1530-patient|53 +1/2-week|53 +receptor-negative|53 +job-share|53 +three-level|53 +two-and-one-half|53 +1/2-inch|53 +out-of-office|53 +sub-optimal|53 +c-reactive|53 +anti-gad|53 +re-treated|52 +re-emphasize|52 +bed-bound|52 +q.2-4h|52 +re-accumulation|52 +transfusion-related|52 +6-thioguanine|52 +throat-clearing|52 +p-2|52 +daughter-in-law|52 +screening-never|52 +anti-cardiolipin|52 +co-enzyme|52 +closed-head|52 +theo-24|52 +clear-cell|52 +computer-assisted|52 +pre-term|52 +nipple-areolar|52 +high-tone|52 +pouch-to-anal|52 +al-anon|52 +m-mode|52 +anti-convulsant|52 +breast-self|52 +no-added|52 +straight-a|52 +post-viral|52 +naphcon-a|52 +hormone-receptor|52 +tobacco-no|52 +bid-tid|52 +re-entrant|51 +roux-y|51 +t8-t9|51 +i-123|51 +stroke-type|51 +half-days|51 +mrsa-positive|51 +low-flow|51 +b-100|51 +35-year|51 +light-weight|51 +ileopouch-anal|51 +wast-short|51 +non-epileptic|51 +7-mg|51 +kool-aid|51 +well-supported|51 +stiff-man|51 +two-pack-per-day|51 +thin-walled|51 +mid-ascending|51 +v-fib|51 +non-inflammatory|51 +combined-modality|51 +full-skin|51 +1-1/2-inch|51 +vaccine-o|51 +tts-3|51 +dream-enactment|51 +functioning-teacher|51 +heart-healthy|50 +cough-sneeze-strain|50 +chemo-induced|50 +tobacco-never|50 +varus-producing|50 +heavy-duty|50 +kidney-pancreas|50 +sleep-related|50 +high-potency|50 +1-soft|50 +go-cart|50 +side-viewing|50 +alternate-day|50 +3-4x/week|50 +illness-none|50 +bed-wetting|50 +young-onset|50 +cover-up|50 +two-part|50 +self-catheterizations|50 +follows-up|50 +prescription-strength|50 +bcr-abl|50 +up-titrate|50 +latex-free|50 +water-filled|50 +b-bevel|50 +neuro-imaging|50 +two-month-old|50 +t-bone|50 +full-term|50 +step-son|50 +one-pack-a-day|50 +plaque-type|50 +day-21|50 +every-two-week|50 +two-wheeled|50 +out-of-state|50 +fever-type|50 +same-day|50 +2-step|50 +roux-en-y|50 +pre-ect|50 +well-baby|50 +native-american|50 +wolff-parkinson-white|10000 Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/hyphenated_sample.txt URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/hyphenated_sample.txt?rev=1463641&view=auto ============================================================================== --- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/hyphenated_sample.txt (added) +++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/hyphenated_sample.txt Tue Apr 2 17:41:30 2013 @@ -0,0 +1,11 @@ +follow-up|7 +x-rays|15 +x-ray|8 +high-grade|21 +32-year-old|1 +33-year-old|1 +multi-vitamin|3 +3-month|1 +non-small-cell|3 +non-hodgkins|1 +non-hodgkin|2 Added: ctakes/trunk/ctakes-coreference-res/.classpath URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-coreference-res/.classpath?rev=1463641&view=auto ============================================================================== --- ctakes/trunk/ctakes-coreference-res/.classpath (added) +++ ctakes/trunk/ctakes-coreference-res/.classpath Tue 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