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From build...@apache.org
Subject svn commit: r857900 [5/39] - in /websites/staging/ctakes/trunk: cgi-bin/ content/ content/apidocs/trunk/ content/apidocs/trunk/edu/ content/apidocs/trunk/index-files/ content/apidocs/trunk/org/apache/ctakes/assertion/attributes/ content/apidocs/trunk/o...
Date Tue, 09 Apr 2013 19:16:39 GMT
Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-3.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-3.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-3.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:19 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:43 EDT 2013 -->
 <TITLE>
 C-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 
@@ -1283,9 +1283,6 @@ Variable in class org.apache.ctakes.type
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/SignSymptomMention_Type.html#casFeat_relativeTemporalContext"><B>casFeat_relativeTemporalContext</B></A> - 
 Variable in class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/SignSymptomMention_Type.html" title="class in org.apache.ctakes.typesystem.type.textsem">SignSymptomMention_Type</A>
 <DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html#casFeat_rev_date"><B>casFeat_rev_date</B></A> - 
-Variable in class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader_Type</A>
-<DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/RelationArgument_Type.html#casFeat_role"><B>casFeat_role</B></A> - 
 Variable in class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/RelationArgument_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">RelationArgument_Type</A>
 <DD>&nbsp;
@@ -1355,9 +1352,6 @@ Variable in class org.apache.ctakes.type
 <DT><A HREF="../org/apache/ctakes/typesystem/type/structured/SourceData_Type.html#casFeat_sourceRevisionNbr"><B>casFeat_sourceRevisionNbr</B></A> - 
 Variable in class org.apache.ctakes.typesystem.type.structured.<A HREF="../org/apache/ctakes/typesystem/type/structured/SourceData_Type.html" title="class in org.apache.ctakes.typesystem.type.structured">SourceData_Type</A>
 <DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html#casFeat_start_date"><B>casFeat_start_date</B></A> - 
-Variable in class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader_Type</A>
-<DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation_Type.html#casFeat_startDate"><B>casFeat_startDate</B></A> - 
 Variable in class org.apache.ctakes.drugner.type.<A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation_Type.html" title="class in org.apache.ctakes.drugner.type">DrugMentionAnnotation_Type</A>
 <DD>&nbsp;
@@ -2417,9 +2411,6 @@ Variable in class org.apache.ctakes.type
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/SignSymptomMention_Type.html#casFeatCode_relativeTemporalContext"><B>casFeatCode_relativeTemporalContext</B></A> - 
 Variable in class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/SignSymptomMention_Type.html" title="class in org.apache.ctakes.typesystem.type.textsem">SignSymptomMention_Type</A>
 <DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html#casFeatCode_rev_date"><B>casFeatCode_rev_date</B></A> - 
-Variable in class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader_Type</A>
-<DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/RelationArgument_Type.html#casFeatCode_role"><B>casFeatCode_role</B></A> - 
 Variable in class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/RelationArgument_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">RelationArgument_Type</A>
 <DD>&nbsp;
@@ -2489,9 +2480,6 @@ Variable in class org.apache.ctakes.type
 <DT><A HREF="../org/apache/ctakes/typesystem/type/structured/SourceData_Type.html#casFeatCode_sourceRevisionNbr"><B>casFeatCode_sourceRevisionNbr</B></A> - 
 Variable in class org.apache.ctakes.typesystem.type.structured.<A HREF="../org/apache/ctakes/typesystem/type/structured/SourceData_Type.html" title="class in org.apache.ctakes.typesystem.type.structured">SourceData_Type</A>
 <DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html#casFeatCode_start_date"><B>casFeatCode_start_date</B></A> - 
-Variable in class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader_Type</A>
-<DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation_Type.html#casFeatCode_startDate"><B>casFeatCode_startDate</B></A> - 
 Variable in class org.apache.ctakes.drugner.type.<A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation_Type.html" title="class in org.apache.ctakes.drugner.type">DrugMentionAnnotation_Type</A>
 <DD>&nbsp;
@@ -2782,8 +2770,8 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/chunker/ChunkAdjusterTests.html" title="class in org.apache.ctakes.chunker"><B>ChunkAdjusterTests</B></A> - Class in <A HREF="../org/apache/ctakes/chunker/package-summary.html">org.apache.ctakes.chunker</A><DD>&nbsp;<DT><A HREF="../org/apache/ctakes/chunker/ChunkAdjusterTests.html#ChunkAdjusterTests()"><B>ChunkAdjusterTests()</B></A> - 
 Constructor for class org.apache.ctakes.chunker.<A HREF="../org/apache/ctakes/chunker/ChunkAdjusterTests.html" title="class in org.apache.ctakes.chunker">ChunkAdjusterTests</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation.html" title="class in org.apache.ctakes.drugner.type"><B>ChunkAnnotation</B></A> - Class in <A HREF="../org/apache/ctakes/drugner/type/package-summary.html">org.apache.ctakes.drugner.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:31 EDT 2013
- XML source: ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation.html#ChunkAnnotation()"><B>ChunkAnnotation()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation.html" title="class in org.apache.ctakes.drugner.type"><B>ChunkAnnotation</B></A> - Class in <A HREF="../org/apache/ctakes/drugner/type/package-summary.html">org.apache.ctakes.drugner.type</A><DD>Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013
+ XML source: trunk/ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation.html#ChunkAnnotation()"><B>ChunkAnnotation()</B></A> - 
 Constructor for class org.apache.ctakes.drugner.type.<A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation.html" title="class in org.apache.ctakes.drugner.type">ChunkAnnotation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation.html#ChunkAnnotation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>ChunkAnnotation(int, TOP_Type)</B></A> - 
@@ -2795,7 +2783,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation.html#ChunkAnnotation(org.apache.uima.jcas.JCas, int, int)"><B>ChunkAnnotation(JCas, int, int)</B></A> - 
 Constructor for class org.apache.ctakes.drugner.type.<A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation.html" title="class in org.apache.ctakes.drugner.type">ChunkAnnotation</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation_Type.html" title="class in org.apache.ctakes.drugner.type"><B>ChunkAnnotation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/drugner/type/package-summary.html">org.apache.ctakes.drugner.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:32 EDT 2013<DT><A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation_Type.html#ChunkAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ChunkAnnotation_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation_Type.html" title="class in org.apache.ctakes.drugner.type"><B>ChunkAnnotation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/drugner/type/package-summary.html">org.apache.ctakes.drugner.type</A><DD>Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013<DT><A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation_Type.html#ChunkAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ChunkAnnotation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.drugner.type.<A HREF="../org/apache/ctakes/drugner/type/ChunkAnnotation_Type.html" title="class in org.apache.ctakes.drugner.type">ChunkAnnotation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/chunker/ae/ChunkCreator.html" title="interface in org.apache.ctakes.chunker.ae"><B>ChunkCreator</B></A> - Interface in <A HREF="../org/apache/ctakes/chunker/ae/package-summary.html">org.apache.ctakes.chunker.ae</A><DD>Implementations of this interface are responsible for creating chunk
@@ -3019,8 +3007,8 @@ Method in class org.apache.ctakes.smokin
 <DT><A HREF="../org/apache/ctakes/smokingstatus/cc/RecordResolutionCasConsumer.html#collectionProcessComplete(org.apache.uima.util.ProcessTrace)"><B>collectionProcessComplete(ProcessTrace)</B></A> - 
 Method in class org.apache.ctakes.smokingstatus.cc.<A HREF="../org/apache/ctakes/smokingstatus/cc/RecordResolutionCasConsumer.html" title="class in org.apache.ctakes.smokingstatus.cc">RecordResolutionCasConsumer</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>CollectionTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation.html#CollectionTextRelation()"><B>CollectionTextRelation()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>CollectionTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation.html#CollectionTextRelation()"><B>CollectionTextRelation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">CollectionTextRelation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation.html#CollectionTextRelation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>CollectionTextRelation(int, TOP_Type)</B></A> - 
@@ -3029,7 +3017,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation.html#CollectionTextRelation(org.apache.uima.jcas.JCas)"><B>CollectionTextRelation(JCas)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">CollectionTextRelation</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>CollectionTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation_Type.html#CollectionTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>CollectionTextRelation_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>CollectionTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation_Type.html#CollectionTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>CollectionTextRelation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/CollectionTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">CollectionTextRelation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/padtermspotter/fsm/output/IllnessDxIndicator.html#COLON_STATUS"><B>COLON_STATUS</B></A> - 
@@ -3098,8 +3086,8 @@ Method in class org.apache.ctakes.utils.
 <DT><A HREF="../org/apache/ctakes/regression/test/RegressionPipelineTest.html#compareXMLOutput(java.io.File, java.io.File)"><B>compareXMLOutput(File, File)</B></A> - 
 Method in class org.apache.ctakes.regression.test.<A HREF="../org/apache/ctakes/regression/test/RegressionPipelineTest.html" title="class in org.apache.ctakes.regression.test">RegressionPipelineTest</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ComplicatesDisruptsTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation.html#ComplicatesDisruptsTextRelation()"><B>ComplicatesDisruptsTextRelation()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ComplicatesDisruptsTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation.html#ComplicatesDisruptsTextRelation()"><B>ComplicatesDisruptsTextRelation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">ComplicatesDisruptsTextRelation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation.html#ComplicatesDisruptsTextRelation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>ComplicatesDisruptsTextRelation(int, TOP_Type)</B></A> - 
@@ -3108,14 +3096,14 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation.html#ComplicatesDisruptsTextRelation(org.apache.uima.jcas.JCas)"><B>ComplicatesDisruptsTextRelation(JCas)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">ComplicatesDisruptsTextRelation</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ComplicatesDisruptsTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation_Type.html#ComplicatesDisruptsTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ComplicatesDisruptsTextRelation_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ComplicatesDisruptsTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation_Type.html#ComplicatesDisruptsTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ComplicatesDisruptsTextRelation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/ComplicatesDisruptsTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">ComplicatesDisruptsTextRelation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/preprocessor/Utility.html#compress(java.lang.StringBuffer)"><B>compress(StringBuffer)</B></A> - 
 Static method in class org.apache.ctakes.preprocessor.<A HREF="../org/apache/ctakes/preprocessor/Utility.html" title="class in org.apache.ctakes.preprocessor">Utility</A>
 <DD>remove leading and trailing whitespace from each line
-<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept.html" title="class in org.apache.ctakes.assertion.medfacts.types"><B>Concept</B></A> - Class in <A HREF="../org/apache/ctakes/assertion/medfacts/types/package-summary.html">org.apache.ctakes.assertion.medfacts.types</A><DD>Updated by JCasGen Mon Apr 08 11:58:23 EDT 2013
- XML source: ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept.html#Concept()"><B>Concept()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept.html" title="class in org.apache.ctakes.assertion.medfacts.types"><B>Concept</B></A> - Class in <A HREF="../org/apache/ctakes/assertion/medfacts/types/package-summary.html">org.apache.ctakes.assertion.medfacts.types</A><DD>Updated by JCasGen Tue Apr 09 12:44:13 EDT 2013
+ XML source: trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept.html#Concept()"><B>Concept()</B></A> - 
 Constructor for class org.apache.ctakes.assertion.medfacts.types.<A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept.html" title="class in org.apache.ctakes.assertion.medfacts.types">Concept</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept.html#Concept(int, org.apache.uima.jcas.cas.TOP_Type)"><B>Concept(int, TOP_Type)</B></A> - 
@@ -3127,7 +3115,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept.html#Concept(org.apache.uima.jcas.JCas, int, int)"><B>Concept(JCas, int, int)</B></A> - 
 Constructor for class org.apache.ctakes.assertion.medfacts.types.<A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept.html" title="class in org.apache.ctakes.assertion.medfacts.types">Concept</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept_Type.html" title="class in org.apache.ctakes.assertion.medfacts.types"><B>Concept_Type</B></A> - Class in <A HREF="../org/apache/ctakes/assertion/medfacts/types/package-summary.html">org.apache.ctakes.assertion.medfacts.types</A><DD>Updated by JCasGen Mon Apr 08 11:58:23 EDT 2013<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept_Type.html#Concept_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>Concept_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept_Type.html" title="class in org.apache.ctakes.assertion.medfacts.types"><B>Concept_Type</B></A> - Class in <A HREF="../org/apache/ctakes/assertion/medfacts/types/package-summary.html">org.apache.ctakes.assertion.medfacts.types</A><DD>Updated by JCasGen Tue Apr 09 12:44:13 EDT 2013<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept_Type.html#Concept_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>Concept_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.assertion.medfacts.types.<A HREF="../org/apache/ctakes/assertion/medfacts/types/Concept_Type.html" title="class in org.apache.ctakes.assertion.medfacts.types">Concept_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/assertion/medfacts/ConceptConverterAnalysisEngine.html" title="class in org.apache.ctakes.assertion.medfacts"><B>ConceptConverterAnalysisEngine</B></A> - Class in <A HREF="../org/apache/ctakes/assertion/medfacts/package-summary.html">org.apache.ctakes.assertion.medfacts</A><DD>&nbsp;<DT><A HREF="../org/apache/ctakes/assertion/medfacts/ConceptConverterAnalysisEngine.html#ConceptConverterAnalysisEngine()"><B>ConceptConverterAnalysisEngine()</B></A> - 
@@ -3174,8 +3162,8 @@ Static variable in class org.apache.ctak
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/CONJP.html" title="class in org.apache.ctakes.typesystem.type.syntax"><B>CONJP</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/syntax/package-summary.html">org.apache.ctakes.typesystem.type.syntax</A><DD>A phrase-level conjunction
 Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.CONJP
- Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/CONJP.html#CONJP()"><B>CONJP()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/CONJP.html#CONJP()"><B>CONJP()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.syntax.<A HREF="../org/apache/ctakes/typesystem/type/syntax/CONJP.html" title="class in org.apache.ctakes.typesystem.type.syntax">CONJP</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/CONJP.html#CONJP(int, org.apache.uima.jcas.cas.TOP_Type)"><B>CONJP(int, TOP_Type)</B></A> - 
@@ -3189,7 +3177,7 @@ Constructor for class org.apache.ctakes.
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/CONJP_Type.html" title="class in org.apache.ctakes.typesystem.type.syntax"><B>CONJP_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/syntax/package-summary.html">org.apache.ctakes.typesystem.type.syntax</A><DD>A phrase-level conjunction
 Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.CONJP
- Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/CONJP_Type.html#CONJP_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>CONJP_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/CONJP_Type.html#CONJP_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>CONJP_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.syntax.<A HREF="../org/apache/ctakes/typesystem/type/syntax/CONJP_Type.html" title="class in org.apache.ctakes.typesystem.type.syntax">CONJP_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ConllDependencyNode.html" title="class in org.apache.ctakes.typesystem.type.syntax"><B>ConllDependencyNode</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/syntax/package-summary.html">org.apache.ctakes.typesystem.type.syntax</A><DD>A dependency parser node in the CONLL-X format, namely, where each node is a token with 10 fields.<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ConllDependencyNode.html#ConllDependencyNode()"><B>ConllDependencyNode()</B></A> - 
@@ -3556,8 +3544,8 @@ Static variable in class org.apache.ctak
 Constructor for class org.apache.ctakes.coreference.util.<A HREF="../org/apache/ctakes/coreference/util/CorefConsts.html" title="class in org.apache.ctakes.coreference.util">CorefConsts</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CoreferenceRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>CoreferenceRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>A coreference pair, with antecedent as arg1 and anaphor as arg2
- Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CoreferenceRelation.html#CoreferenceRelation()"><B>CoreferenceRelation()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CoreferenceRelation.html#CoreferenceRelation()"><B>CoreferenceRelation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/CoreferenceRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">CoreferenceRelation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CoreferenceRelation.html#CoreferenceRelation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>CoreferenceRelation(int, TOP_Type)</B></A> - 
@@ -3567,7 +3555,7 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/CoreferenceRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">CoreferenceRelation</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CoreferenceRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>CoreferenceRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>A coreference pair, with antecedent as arg1 and anaphor as arg2
- Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CoreferenceRelation_Type.html#CoreferenceRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>CoreferenceRelation_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/CoreferenceRelation_Type.html#CoreferenceRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>CoreferenceRelation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/CoreferenceRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">CoreferenceRelation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/padtermspotter/cc/PADOffSetsRecord.html#COUNT_PLACE_HOLDER"><B>COUNT_PLACE_HOLDER</B></A> - 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-4.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-4.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-4.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:19 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:43 EDT 2013 -->
 <TITLE>
 D-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 
@@ -101,8 +101,8 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.typesystem.type.refsem.<A HREF="../org/apache/ctakes/typesystem/type/refsem/Date_Type.html" title="class in org.apache.ctakes.typesystem.type.refsem">Date_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/DateAnnotation.html" title="class in org.apache.ctakes.typesystem.type.textsem"><B>DateAnnotation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/textsem/package-summary.html">org.apache.ctakes.typesystem.type.textsem</A><DD>Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation
- Updated by JCasGen Mon Apr 08 11:58:08 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/DateAnnotation.html#DateAnnotation()"><B>DateAnnotation()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/DateAnnotation.html#DateAnnotation()"><B>DateAnnotation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/DateAnnotation.html" title="class in org.apache.ctakes.typesystem.type.textsem">DateAnnotation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/DateAnnotation.html#DateAnnotation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>DateAnnotation(int, TOP_Type)</B></A> - 
@@ -115,11 +115,11 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/DateAnnotation.html" title="class in org.apache.ctakes.typesystem.type.textsem">DateAnnotation</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/DateAnnotation_Type.html" title="class in org.apache.ctakes.typesystem.type.textsem"><B>DateAnnotation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/textsem/package-summary.html">org.apache.ctakes.typesystem.type.textsem</A><DD>Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation
- Updated by JCasGen Mon Apr 08 11:58:08 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/DateAnnotation_Type.html#DateAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DateAnnotation_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/DateAnnotation_Type.html#DateAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DateAnnotation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/DateAnnotation_Type.html" title="class in org.apache.ctakes.typesystem.type.textsem">DateAnnotation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
-<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm"><B>DateAttributeValue</B></A> - Class in <A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/package-summary.html">org.apache.ctakes.smokingstatus.type.libsvm</A><DD>Updated by JCasGen Mon Apr 08 11:57:42 EDT 2013
- XML source: ctakes-smoking-status-res/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue.html#DateAttributeValue()"><B>DateAttributeValue()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm"><B>DateAttributeValue</B></A> - Class in <A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/package-summary.html">org.apache.ctakes.smokingstatus.type.libsvm</A><DD>Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013
+ XML source: trunk/ctakes-smoking-status-res/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue.html#DateAttributeValue()"><B>DateAttributeValue()</B></A> - 
 Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.<A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm">DateAttributeValue</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue.html#DateAttributeValue(int, org.apache.uima.jcas.cas.TOP_Type)"><B>DateAttributeValue(int, TOP_Type)</B></A> - 
@@ -131,7 +131,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue.html#DateAttributeValue(org.apache.uima.jcas.JCas, int, int)"><B>DateAttributeValue(JCas, int, int)</B></A> - 
 Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.<A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm">DateAttributeValue</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue_Type.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm"><B>DateAttributeValue_Type</B></A> - Class in <A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/package-summary.html">org.apache.ctakes.smokingstatus.type.libsvm</A><DD>Updated by JCasGen Mon Apr 08 11:57:42 EDT 2013<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue_Type.html#DateAttributeValue_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DateAttributeValue_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue_Type.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm"><B>DateAttributeValue_Type</B></A> - Class in <A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/package-summary.html">org.apache.ctakes.smokingstatus.type.libsvm</A><DD>Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue_Type.html#DateAttributeValue_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DateAttributeValue_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.<A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DateAttributeValue_Type.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm">DateAttributeValue_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/core/fsm/machine/DateFSM.html" title="class in org.apache.ctakes.core.fsm.machine"><B>DateFSM</B></A> - Class in <A HREF="../org/apache/ctakes/core/fsm/machine/package-summary.html">org.apache.ctakes.core.fsm.machine</A><DD>Uses one or more finite state machines to detect dates in the given input of
@@ -249,8 +249,8 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/relationextractor/ae/DegreeOfRelationExtractorAnnotator.html" title="class in org.apache.ctakes.relationextractor.ae"><B>DegreeOfRelationExtractorAnnotator</B></A> - Class in <A HREF="../org/apache/ctakes/relationextractor/ae/package-summary.html">org.apache.ctakes.relationextractor.ae</A><DD>Identifies Degree_Of relation between entities and modifiers<DT><A HREF="../org/apache/ctakes/relationextractor/ae/DegreeOfRelationExtractorAnnotator.html#DegreeOfRelationExtractorAnnotator()"><B>DegreeOfRelationExtractorAnnotator()</B></A> - 
 Constructor for class org.apache.ctakes.relationextractor.ae.<A HREF="../org/apache/ctakes/relationextractor/ae/DegreeOfRelationExtractorAnnotator.html" title="class in org.apache.ctakes.relationextractor.ae">DegreeOfRelationExtractorAnnotator</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>DegreeOfTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation.html#DegreeOfTextRelation()"><B>DegreeOfTextRelation()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>DegreeOfTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation.html#DegreeOfTextRelation()"><B>DegreeOfTextRelation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">DegreeOfTextRelation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation.html#DegreeOfTextRelation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>DegreeOfTextRelation(int, TOP_Type)</B></A> - 
@@ -259,7 +259,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation.html#DegreeOfTextRelation(org.apache.uima.jcas.JCas)"><B>DegreeOfTextRelation(JCas)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">DegreeOfTextRelation</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>DegreeOfTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation_Type.html#DegreeOfTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DegreeOfTextRelation_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>DegreeOfTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation_Type.html#DegreeOfTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DegreeOfTextRelation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/DegreeOfTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">DegreeOfTextRelation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/dependency/parser/util/Delim.html" title="class in org.apache.ctakes.dependency.parser.util"><B>Delim</B></A> - Class in <A HREF="../org/apache/ctakes/dependency/parser/util/package-summary.html">org.apache.ctakes.dependency.parser.util</A><DD>&nbsp;<DT><A HREF="../org/apache/ctakes/dependency/parser/util/Delim.html#Delim()"><B>Delim()</B></A> - 
@@ -274,8 +274,8 @@ Static variable in class org.apache.ctak
 <DT><A HREF="../org/apache/ctakes/coreference/util/SyntaxAttributeCalculator.html#demFeatSet"><B>demFeatSet</B></A> - 
 Static variable in class org.apache.ctakes.coreference.util.<A HREF="../org/apache/ctakes/coreference/util/SyntaxAttributeCalculator.html" title="class in org.apache.ctakes.coreference.util">SyntaxAttributeCalculator</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/coreference/type/DemMarkable.html" title="class in org.apache.ctakes.coreference.type"><B>DemMarkable</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:25 EDT 2013
- XML source: ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/coreference/type/DemMarkable.html#DemMarkable()"><B>DemMarkable()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/coreference/type/DemMarkable.html" title="class in org.apache.ctakes.coreference.type"><B>DemMarkable</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013
+ XML source: trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/coreference/type/DemMarkable.html#DemMarkable()"><B>DemMarkable()</B></A> - 
 Constructor for class org.apache.ctakes.coreference.type.<A HREF="../org/apache/ctakes/coreference/type/DemMarkable.html" title="class in org.apache.ctakes.coreference.type">DemMarkable</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/coreference/type/DemMarkable.html#DemMarkable(int, org.apache.uima.jcas.cas.TOP_Type)"><B>DemMarkable(int, TOP_Type)</B></A> - 
@@ -287,7 +287,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/coreference/type/DemMarkable.html#DemMarkable(org.apache.uima.jcas.JCas, int, int)"><B>DemMarkable(JCas, int, int)</B></A> - 
 Constructor for class org.apache.ctakes.coreference.type.<A HREF="../org/apache/ctakes/coreference/type/DemMarkable.html" title="class in org.apache.ctakes.coreference.type">DemMarkable</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/coreference/type/DemMarkable_Type.html" title="class in org.apache.ctakes.coreference.type"><B>DemMarkable_Type</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:25 EDT 2013<DT><A HREF="../org/apache/ctakes/coreference/type/DemMarkable_Type.html#DemMarkable_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DemMarkable_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/coreference/type/DemMarkable_Type.html" title="class in org.apache.ctakes.coreference.type"><B>DemMarkable_Type</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013<DT><A HREF="../org/apache/ctakes/coreference/type/DemMarkable_Type.html#DemMarkable_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DemMarkable_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.coreference.type.<A HREF="../org/apache/ctakes/coreference/type/DemMarkable_Type.html" title="class in org.apache.ctakes.coreference.type">DemMarkable_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/typesystem/type/structured/Demographics.html" title="class in org.apache.ctakes.typesystem.type.structured"><B>Demographics</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/structured/package-summary.html">org.apache.ctakes.typesystem.type.structured</A><DD>Demographic information about the patient in a clinical document.<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/Demographics.html#Demographics()"><B>Demographics()</B></A> - 
@@ -450,8 +450,8 @@ Variable in class org.apache.ctakes.asse
 <DT><A HREF="../org/apache/ctakes/temporal/ae/DocTimeRelAnnotator.html" title="class in org.apache.ctakes.temporal.ae"><B>DocTimeRelAnnotator</B></A> - Class in <A HREF="../org/apache/ctakes/temporal/ae/package-summary.html">org.apache.ctakes.temporal.ae</A><DD>&nbsp;<DT><A HREF="../org/apache/ctakes/temporal/ae/DocTimeRelAnnotator.html#DocTimeRelAnnotator()"><B>DocTimeRelAnnotator()</B></A> - 
 Constructor for class org.apache.ctakes.temporal.ae.<A HREF="../org/apache/ctakes/temporal/ae/DocTimeRelAnnotator.html" title="class in org.apache.ctakes.temporal.ae">DocTimeRelAnnotator</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification.html" title="class in org.apache.ctakes.typesystem.type.structured"><B>DocumentClassification</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/structured/package-summary.html">org.apache.ctakes.typesystem.type.structured</A><DD>Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification.html#DocumentClassification()"><B>DocumentClassification()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification.html" title="class in org.apache.ctakes.typesystem.type.structured"><B>DocumentClassification</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/structured/package-summary.html">org.apache.ctakes.typesystem.type.structured</A><DD>Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification.html#DocumentClassification()"><B>DocumentClassification()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.structured.<A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification.html" title="class in org.apache.ctakes.typesystem.type.structured">DocumentClassification</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification.html#DocumentClassification(int, org.apache.uima.jcas.cas.TOP_Type)"><B>DocumentClassification(int, TOP_Type)</B></A> - 
@@ -460,11 +460,11 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification.html#DocumentClassification(org.apache.uima.jcas.JCas)"><B>DocumentClassification(JCas)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.structured.<A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification.html" title="class in org.apache.ctakes.typesystem.type.structured">DocumentClassification</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification_Type.html" title="class in org.apache.ctakes.typesystem.type.structured"><B>DocumentClassification_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/structured/package-summary.html">org.apache.ctakes.typesystem.type.structured</A><DD>Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification_Type.html#DocumentClassification_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DocumentClassification_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification_Type.html" title="class in org.apache.ctakes.typesystem.type.structured"><B>DocumentClassification_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/structured/package-summary.html">org.apache.ctakes.typesystem.type.structured</A><DD>Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification_Type.html#DocumentClassification_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DocumentClassification_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.structured.<A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentClassification_Type.html" title="class in org.apache.ctakes.typesystem.type.structured">DocumentClassification_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
-<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DocumentID.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm"><B>DocumentID</B></A> - Class in <A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/package-summary.html">org.apache.ctakes.smokingstatus.type.libsvm</A><DD>Updated by JCasGen Mon Apr 08 11:57:42 EDT 2013
- XML source: ctakes-smoking-status-res/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DocumentID.html#DocumentID()"><B>DocumentID()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DocumentID.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm"><B>DocumentID</B></A> - Class in <A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/package-summary.html">org.apache.ctakes.smokingstatus.type.libsvm</A><DD>Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013
+ XML source: trunk/ctakes-smoking-status-res/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DocumentID.html#DocumentID()"><B>DocumentID()</B></A> - 
 Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.<A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DocumentID.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm">DocumentID</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DocumentID.html#DocumentID(int, org.apache.uima.jcas.cas.TOP_Type)"><B>DocumentID(int, TOP_Type)</B></A> - 
@@ -477,8 +477,8 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.<A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DocumentID.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm">DocumentID</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentID.html" title="class in org.apache.ctakes.typesystem.type.structured"><B>DocumentID</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/structured/package-summary.html">org.apache.ctakes.typesystem.type.structured</A><DD>Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP
- Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentID.html#DocumentID()"><B>DocumentID()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentID.html#DocumentID()"><B>DocumentID()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.structured.<A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentID.html" title="class in org.apache.ctakes.typesystem.type.structured">DocumentID</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentID.html#DocumentID(int, org.apache.uima.jcas.cas.TOP_Type)"><B>DocumentID(int, TOP_Type)</B></A> - 
@@ -487,11 +487,11 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentID.html#DocumentID(org.apache.uima.jcas.JCas)"><B>DocumentID(JCas)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.structured.<A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentID.html" title="class in org.apache.ctakes.typesystem.type.structured">DocumentID</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DocumentID_Type.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm"><B>DocumentID_Type</B></A> - Class in <A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/package-summary.html">org.apache.ctakes.smokingstatus.type.libsvm</A><DD>Updated by JCasGen Mon Apr 08 11:57:42 EDT 2013<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DocumentID_Type.html#DocumentID_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DocumentID_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DocumentID_Type.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm"><B>DocumentID_Type</B></A> - Class in <A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/package-summary.html">org.apache.ctakes.smokingstatus.type.libsvm</A><DD>Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DocumentID_Type.html#DocumentID_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DocumentID_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.<A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/DocumentID_Type.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm">DocumentID_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentID_Type.html" title="class in org.apache.ctakes.typesystem.type.structured"><B>DocumentID_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/structured/package-summary.html">org.apache.ctakes.typesystem.type.structured</A><DD>Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP
- Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentID_Type.html#DocumentID_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DocumentID_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentID_Type.html#DocumentID_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DocumentID_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.structured.<A HREF="../org/apache/ctakes/typesystem/type/structured/DocumentID_Type.html" title="class in org.apache.ctakes.typesystem.type.structured">DocumentID_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/core/util/DocumentIDAnnotationUtil.html" title="class in org.apache.ctakes.core.util"><B>DocumentIDAnnotationUtil</B></A> - Class in <A HREF="../org/apache/ctakes/core/util/package-summary.html">org.apache.ctakes.core.util</A><DD>&nbsp;<DT><A HREF="../org/apache/ctakes/core/util/DocumentIDAnnotationUtil.html#DocumentIDAnnotationUtil()"><B>DocumentIDAnnotationUtil()</B></A> - 
@@ -603,8 +603,8 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.drugner.fsm.output.elements.<A HREF="../org/apache/ctakes/drugner/fsm/output/elements/DrugChangeStatusToken.html" title="class in org.apache.ctakes.drugner.fsm.output.elements">DrugChangeStatusToken</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textspan/DrugLookupWindowAnnotation.html" title="class in org.apache.ctakes.typesystem.type.textspan"><B>DrugLookupWindowAnnotation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/textspan/package-summary.html">org.apache.ctakes.typesystem.type.textspan</A><DD>Similar to LookupWindowAnnotation however, these annotations are restricted to the segments/sections specified in the parameter - sectionOverrideSet - in DrugCNP2LookupWindow
- Updated by JCasGen Mon Apr 08 11:56:32 EDT 2013
- XML source: ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/textspan/DrugLookupWindowAnnotation.html#DrugLookupWindowAnnotation()"><B>DrugLookupWindowAnnotation()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013
+ XML source: trunk/ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/textspan/DrugLookupWindowAnnotation.html#DrugLookupWindowAnnotation()"><B>DrugLookupWindowAnnotation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.textspan.<A HREF="../org/apache/ctakes/typesystem/type/textspan/DrugLookupWindowAnnotation.html" title="class in org.apache.ctakes.typesystem.type.textspan">DrugLookupWindowAnnotation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textspan/DrugLookupWindowAnnotation.html#DrugLookupWindowAnnotation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>DrugLookupWindowAnnotation(int, TOP_Type)</B></A> - 
@@ -617,15 +617,15 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.typesystem.type.textspan.<A HREF="../org/apache/ctakes/typesystem/type/textspan/DrugLookupWindowAnnotation.html" title="class in org.apache.ctakes.typesystem.type.textspan">DrugLookupWindowAnnotation</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textspan/DrugLookupWindowAnnotation_Type.html" title="class in org.apache.ctakes.typesystem.type.textspan"><B>DrugLookupWindowAnnotation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/textspan/package-summary.html">org.apache.ctakes.typesystem.type.textspan</A><DD>Similar to LookupWindowAnnotation however, these annotations are restricted to the segments/sections specified in the parameter - sectionOverrideSet - in DrugCNP2LookupWindow
- Updated by JCasGen Mon Apr 08 11:56:32 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/textspan/DrugLookupWindowAnnotation_Type.html#DrugLookupWindowAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DrugLookupWindowAnnotation_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/textspan/DrugLookupWindowAnnotation_Type.html#DrugLookupWindowAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DrugLookupWindowAnnotation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.textspan.<A HREF="../org/apache/ctakes/typesystem/type/textspan/DrugLookupWindowAnnotation_Type.html" title="class in org.apache.ctakes.typesystem.type.textspan">DrugLookupWindowAnnotation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/drugner/DrugMention.html" title="class in org.apache.ctakes.drugner"><B>DrugMention</B></A> - Class in <A HREF="../org/apache/ctakes/drugner/package-summary.html">org.apache.ctakes.drugner</A><DD>Contains information from a single document - is not the result of data
  mining.<DT><A HREF="../org/apache/ctakes/drugner/DrugMention.html#DrugMention(org.apache.uima.jcas.JCas, int, int)"><B>DrugMention(JCas, int, int)</B></A> - 
 Constructor for class org.apache.ctakes.drugner.<A HREF="../org/apache/ctakes/drugner/DrugMention.html" title="class in org.apache.ctakes.drugner">DrugMention</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation.html" title="class in org.apache.ctakes.drugner.type"><B>DrugMentionAnnotation</B></A> - Class in <A HREF="../org/apache/ctakes/drugner/type/package-summary.html">org.apache.ctakes.drugner.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:32 EDT 2013
- XML source: ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation.html#DrugMentionAnnotation()"><B>DrugMentionAnnotation()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation.html" title="class in org.apache.ctakes.drugner.type"><B>DrugMentionAnnotation</B></A> - Class in <A HREF="../org/apache/ctakes/drugner/type/package-summary.html">org.apache.ctakes.drugner.type</A><DD>Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013
+ XML source: trunk/ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation.html#DrugMentionAnnotation()"><B>DrugMentionAnnotation()</B></A> - 
 Constructor for class org.apache.ctakes.drugner.type.<A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation.html" title="class in org.apache.ctakes.drugner.type">DrugMentionAnnotation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation.html#DrugMentionAnnotation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>DrugMentionAnnotation(int, TOP_Type)</B></A> - 
@@ -637,7 +637,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation.html#DrugMentionAnnotation(org.apache.uima.jcas.JCas, int, int)"><B>DrugMentionAnnotation(JCas, int, int)</B></A> - 
 Constructor for class org.apache.ctakes.drugner.type.<A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation.html" title="class in org.apache.ctakes.drugner.type">DrugMentionAnnotation</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation_Type.html" title="class in org.apache.ctakes.drugner.type"><B>DrugMentionAnnotation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/drugner/type/package-summary.html">org.apache.ctakes.drugner.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:32 EDT 2013<DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation_Type.html#DrugMentionAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DrugMentionAnnotation_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation_Type.html" title="class in org.apache.ctakes.drugner.type"><B>DrugMentionAnnotation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/drugner/type/package-summary.html">org.apache.ctakes.drugner.type</A><DD>Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013<DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation_Type.html#DrugMentionAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>DrugMentionAnnotation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.drugner.type.<A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation_Type.html" title="class in org.apache.ctakes.drugner.type">DrugMentionAnnotation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/drugner/ae/DrugMentionAnnotator.html" title="class in org.apache.ctakes.drugner.ae"><B>DrugMentionAnnotator</B></A> - Class in <A HREF="../org/apache/ctakes/drugner/ae/package-summary.html">org.apache.ctakes.drugner.ae</A><DD>Finds tokens based on context.<DT><A HREF="../org/apache/ctakes/drugner/ae/DrugMentionAnnotator.html#DrugMentionAnnotator()"><B>DrugMentionAnnotator()</B></A> - 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-5.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-5.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-5.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:19 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:43 EDT 2013 -->
 <TITLE>
 E-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 
@@ -85,7 +85,7 @@ function windowTitle()
 <DT><A HREF="../org/apache/ctakes/coreference/util/EditDistance.html" title="class in org.apache.ctakes.coreference.util"><B>EditDistance</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/util/package-summary.html">org.apache.ctakes.coreference.util</A><DD>&nbsp;<DT><A HREF="../org/apache/ctakes/coreference/util/EditDistance.html#EditDistance()"><B>EditDistance()</B></A> - 
 Constructor for class org.apache.ctakes.coreference.util.<A HREF="../org/apache/ctakes/coreference/util/EditDistance.html" title="class in org.apache.ctakes.coreference.util">EditDistance</A>
 <DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/package-summary.html"><B>edu.mayo.bmi.lookup.type</B></A> - package edu.mayo.bmi.lookup.type<DD>&nbsp;<DT><A HREF="../org/apache/ctakes/typesystem/type/refsem/Element.html" title="class in org.apache.ctakes.typesystem.type.refsem"><B>Element</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/refsem/package-summary.html">org.apache.ctakes.typesystem.type.refsem</A><DD>A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.<DT><A HREF="../org/apache/ctakes/typesystem/type/refsem/Element.html#Element()"><B>Element()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/refsem/Element.html" title="class in org.apache.ctakes.typesystem.type.refsem"><B>Element</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/refsem/package-summary.html">org.apache.ctakes.typesystem.type.refsem</A><DD>A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.<DT><A HREF="../org/apache/ctakes/typesystem/type/refsem/Element.html#Element()"><B>Element()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.refsem.<A HREF="../org/apache/ctakes/typesystem/type/refsem/Element.html" title="class in org.apache.ctakes.typesystem.type.refsem">Element</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/refsem/Element.html#Element(int, org.apache.uima.jcas.cas.TOP_Type)"><B>Element(int, TOP_Type)</B></A> - 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-6.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-6.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-6.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:19 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:43 EDT 2013 -->
 <TITLE>
 F-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 
@@ -118,9 +118,6 @@ Static variable in class org.apache.ctak
 <DT><A HREF="../org/apache/ctakes/sideeffect/ae/SESentenceClassifierAnnotator.html#feaMap"><B>feaMap</B></A> - 
 Variable in class org.apache.ctakes.sideeffect.ae.<A HREF="../org/apache/ctakes/sideeffect/ae/SESentenceClassifierAnnotator.html" title="class in org.apache.ctakes.sideeffect.ae">SESentenceClassifierAnnotator</A>
 <DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html#featOkTst"><B>featOkTst</B></A> - 
-Static variable in class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader_Type</A>
-<DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion_Type.html#featOkTst"><B>featOkTst</B></A> - 
 Static variable in class org.apache.ctakes.assertion.medfacts.types.<A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion_Type.html" title="class in org.apache.ctakes.assertion.medfacts.types">Assertion_Type</A>
 <DD>&nbsp;
@@ -842,8 +839,8 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.drugner.fsm.output.elements.<A HREF="../org/apache/ctakes/drugner/fsm/output/elements/FormToken.html" title="class in org.apache.ctakes.drugner.fsm.output.elements">FormToken</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/FractionAnnotation.html" title="class in org.apache.ctakes.typesystem.type.textsem"><B>FractionAnnotation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/textsem/package-summary.html">org.apache.ctakes.typesystem.type.textsem</A><DD>Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.FractionAnnotation
- Updated by JCasGen Mon Apr 08 11:58:08 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/FractionAnnotation.html#FractionAnnotation()"><B>FractionAnnotation()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/FractionAnnotation.html#FractionAnnotation()"><B>FractionAnnotation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/FractionAnnotation.html" title="class in org.apache.ctakes.typesystem.type.textsem">FractionAnnotation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/FractionAnnotation.html#FractionAnnotation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>FractionAnnotation(int, TOP_Type)</B></A> - 
@@ -856,7 +853,7 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/FractionAnnotation.html" title="class in org.apache.ctakes.typesystem.type.textsem">FractionAnnotation</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/FractionAnnotation_Type.html" title="class in org.apache.ctakes.typesystem.type.textsem"><B>FractionAnnotation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/textsem/package-summary.html">org.apache.ctakes.typesystem.type.textsem</A><DD>Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.FractionAnnotation
- Updated by JCasGen Mon Apr 08 11:58:08 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/FractionAnnotation_Type.html#FractionAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>FractionAnnotation_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/FractionAnnotation_Type.html#FractionAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>FractionAnnotation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/FractionAnnotation_Type.html" title="class in org.apache.ctakes.typesystem.type.textsem">FractionAnnotation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/drugner/fsm/elements/conditions/FractionCondition.html" title="class in org.apache.ctakes.drugner.fsm.elements.conditions"><B>FractionCondition</B></A> - Class in <A HREF="../org/apache/ctakes/drugner/fsm/elements/conditions/package-summary.html">org.apache.ctakes.drugner.fsm.elements.conditions</A><DD>Checks whether a token is a FractionToken.<DT><A HREF="../org/apache/ctakes/drugner/fsm/elements/conditions/FractionCondition.html#FractionCondition()"><B>FractionCondition()</B></A> - 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-7.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-7.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-7.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:19 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:43 EDT 2013 -->
 <TITLE>
 G-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 
@@ -1644,9 +1644,6 @@ Method in class org.apache.ctakes.drugne
 <DT><A HREF="../org/apache/ctakes/drugner/fsm/output/elements/FrequencyUnitToken.html#getFrequencyUnitQuantity()"><B>getFrequencyUnitQuantity()</B></A> - 
 Method in class org.apache.ctakes.drugner.fsm.output.elements.<A HREF="../org/apache/ctakes/drugner/fsm/output/elements/FrequencyUnitToken.html" title="class in org.apache.ctakes.drugner.fsm.output.elements">FrequencyUnitToken</A>
 <DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html#getFSGenerator()"><B>getFSGenerator()</B></A> - 
-Method in class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader_Type</A>
-<DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion_Type.html#getFSGenerator()"><B>getFSGenerator()</B></A> - 
 Method in class org.apache.ctakes.assertion.medfacts.types.<A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion_Type.html" title="class in org.apache.ctakes.assertion.medfacts.types">Assertion_Type</A>
 <DD>&nbsp;
@@ -3725,12 +3722,6 @@ Method in class org.apache.ctakes.tempor
 <DT><A HREF="../org/apache/ctakes/temporal/ae/feature/IdentifiedAnnotationFeatureExtractor.StringToDoublesProcessor.html#getResult()"><B>getResult()</B></A> - 
 Method in class org.apache.ctakes.temporal.ae.feature.<A HREF="../org/apache/ctakes/temporal/ae/feature/IdentifiedAnnotationFeatureExtractor.StringToDoublesProcessor.html" title="class in org.apache.ctakes.temporal.ae.feature">IdentifiedAnnotationFeatureExtractor.StringToDoublesProcessor</A>
 <DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html#getRev_date()"><B>getRev_date()</B></A> - 
-Method in class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader</A>
-<DD>getter for rev_date - gets
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html#getRev_date(int)"><B>getRev_date(int)</B></A> - 
-Method in class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader_Type</A>
-<DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/necontexts/ContextAnnotator.html#getRightScopeContextAnnotations(org.apache.uima.jcas.JCas, org.apache.uima.jcas.tcas.Annotation, org.apache.uima.jcas.tcas.Annotation)"><B>getRightScopeContextAnnotations(JCas, Annotation, Annotation)</B></A> - 
 Method in class org.apache.ctakes.necontexts.<A HREF="../org/apache/ctakes/necontexts/ContextAnnotator.html" title="class in org.apache.ctakes.necontexts">ContextAnnotator</A>
 <DD>&nbsp;
@@ -3994,12 +3985,6 @@ Method in class org.apache.ctakes.typesy
 <DT><A HREF="../org/apache/ctakes/core/sentence/SentenceSpan.html#getStart()"><B>getStart()</B></A> - 
 Method in class org.apache.ctakes.core.sentence.<A HREF="../org/apache/ctakes/core/sentence/SentenceSpan.html" title="class in org.apache.ctakes.core.sentence">SentenceSpan</A>
 <DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html#getStart_date()"><B>getStart_date()</B></A> - 
-Method in class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader</A>
-<DD>getter for start_date - gets
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html#getStart_date(int)"><B>getStart_date(int)</B></A> - 
-Method in class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader_Type</A>
-<DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation.html#getStartDate()"><B>getStartDate()</B></A> - 
 Method in class org.apache.ctakes.drugner.type.<A HREF="../org/apache/ctakes/drugner/type/DrugMentionAnnotation.html" title="class in org.apache.ctakes.drugner.type">DrugMentionAnnotation</A>
 <DD>getter for startDate - gets
@@ -4480,9 +4465,6 @@ Method in class org.apache.ctakes.typesy
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/IdentifiedAnnotation_Type.html#getTypeID(int)"><B>getTypeID(int)</B></A> - 
 Method in class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/IdentifiedAnnotation_Type.html" title="class in org.apache.ctakes.typesystem.type.textsem">IdentifiedAnnotation_Type</A>
 <DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html#getTypeIndexID()"><B>getTypeIndexID()</B></A> - 
-Method in class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader</A>
-<DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion.html#getTypeIndexID()"><B>getTypeIndexID()</B></A> - 
 Method in class org.apache.ctakes.assertion.medfacts.types.<A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion.html" title="class in org.apache.ctakes.assertion.medfacts.types">Assertion</A>
 <DD>&nbsp;

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-8.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-8.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-8.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:19 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:44 EDT 2013 -->
 <TITLE>
 H-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 
@@ -179,8 +179,8 @@ Variable in class org.apache.ctakes.core
 Variable in class org.apache.ctakes.coreference.util.<A HREF="../org/apache/ctakes/coreference/util/AttributeCalculator.html" title="class in org.apache.ctakes.coreference.util">AttributeCalculator</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/assertion/zoner/types/Heading.html" title="class in org.apache.ctakes.assertion.zoner.types"><B>Heading</B></A> - Class in <A HREF="../org/apache/ctakes/assertion/zoner/types/package-summary.html">org.apache.ctakes.assertion.zoner.types</A><DD>a section heading
- Updated by JCasGen Mon Apr 08 11:58:25 EDT 2013
- XML source: ctakes-assertion-zoner-res/src/main/resources/org/apache/ctakes/assertion/zoner/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/assertion/zoner/types/Heading.html#Heading()"><B>Heading()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:14 EDT 2013
+ XML source: trunk/ctakes-assertion-zoner-res/src/main/resources/org/apache/ctakes/assertion/zoner/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/assertion/zoner/types/Heading.html#Heading()"><B>Heading()</B></A> - 
 Constructor for class org.apache.ctakes.assertion.zoner.types.<A HREF="../org/apache/ctakes/assertion/zoner/types/Heading.html" title="class in org.apache.ctakes.assertion.zoner.types">Heading</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/assertion/zoner/types/Heading.html#Heading(int, org.apache.uima.jcas.cas.TOP_Type)"><B>Heading(int, TOP_Type)</B></A> - 
@@ -193,7 +193,7 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.assertion.zoner.types.<A HREF="../org/apache/ctakes/assertion/zoner/types/Heading.html" title="class in org.apache.ctakes.assertion.zoner.types">Heading</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/assertion/zoner/types/Heading_Type.html" title="class in org.apache.ctakes.assertion.zoner.types"><B>Heading_Type</B></A> - Class in <A HREF="../org/apache/ctakes/assertion/zoner/types/package-summary.html">org.apache.ctakes.assertion.zoner.types</A><DD>a section heading
- Updated by JCasGen Mon Apr 08 11:58:25 EDT 2013<DT><A HREF="../org/apache/ctakes/assertion/zoner/types/Heading_Type.html#Heading_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>Heading_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:14 EDT 2013<DT><A HREF="../org/apache/ctakes/assertion/zoner/types/Heading_Type.html#Heading_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>Heading_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.assertion.zoner.types.<A HREF="../org/apache/ctakes/assertion/zoner/types/Heading_Type.html" title="class in org.apache.ctakes.assertion.zoner.types">Heading_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/utils/xcas_comparison/Const.html#HIDDEN_TEXT"><B>HIDDEN_TEXT</B></A> - 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-9.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-9.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-9.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:19 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:44 EDT 2013 -->
 <TITLE>
 I-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 
@@ -668,8 +668,8 @@ Static method in class org.apache.ctakes
 <DD>Returns true if one span intersects with the other
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/INTJ.html" title="class in org.apache.ctakes.typesystem.type.syntax"><B>INTJ</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/syntax/package-summary.html">org.apache.ctakes.typesystem.type.syntax</A><DD>An interjection
 Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ
- Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/INTJ.html#INTJ()"><B>INTJ()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/INTJ.html#INTJ()"><B>INTJ()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.syntax.<A HREF="../org/apache/ctakes/typesystem/type/syntax/INTJ.html" title="class in org.apache.ctakes.typesystem.type.syntax">INTJ</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/INTJ.html#INTJ(int, org.apache.uima.jcas.cas.TOP_Type)"><B>INTJ(int, TOP_Type)</B></A> - 
@@ -683,7 +683,7 @@ Constructor for class org.apache.ctakes.
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/INTJ_Type.html" title="class in org.apache.ctakes.typesystem.type.syntax"><B>INTJ_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/syntax/package-summary.html">org.apache.ctakes.typesystem.type.syntax</A><DD>An interjection
 Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ
- Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/INTJ_Type.html#INTJ_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>INTJ_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/INTJ_Type.html#INTJ_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>INTJ_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.syntax.<A HREF="../org/apache/ctakes/typesystem/type/syntax/INTJ_Type.html" title="class in org.apache.ctakes.typesystem.type.syntax">INTJ_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/drugner/elements/RouteElement.html#INTRAARTERIAL"><B>INTRAARTERIAL</B></A> - 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index.html Tue Apr  9 19:06:13 2013
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Mon Apr 08 15:09:20 EDT 2013-->
+<!-- Generated by javadoc on Tue Apr 09 14:33:45 EDT 2013-->
 <TITLE>
 Generated Documentation (Untitled)
 </TITLE>

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/org/apache/ctakes/assertion/attributes/GenericAttributeAnalysisEngine.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/org/apache/ctakes/assertion/attributes/GenericAttributeAnalysisEngine.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/org/apache/ctakes/assertion/attributes/GenericAttributeAnalysisEngine.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:07:57 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:32:14 EDT 2013 -->
 <TITLE>
 GenericAttributeAnalysisEngine
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../../../stylesheet.css" TITLE="Style">
 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/org/apache/ctakes/assertion/attributes/SubjectAttributeAnalysisEngine.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/org/apache/ctakes/assertion/attributes/SubjectAttributeAnalysisEngine.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/org/apache/ctakes/assertion/attributes/SubjectAttributeAnalysisEngine.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:07:57 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:32:14 EDT 2013 -->
 <TITLE>
 SubjectAttributeAnalysisEngine
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../../../stylesheet.css" TITLE="Style">
 



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