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From build...@apache.org
Subject svn commit: r857900 [2/39] - in /websites/staging/ctakes/trunk: cgi-bin/ content/ content/apidocs/trunk/ content/apidocs/trunk/edu/ content/apidocs/trunk/index-files/ content/apidocs/trunk/org/apache/ctakes/assertion/attributes/ content/apidocs/trunk/o...
Date Tue, 09 Apr 2013 19:16:39 GMT

Propchange: websites/staging/ctakes/trunk/cgi-bin/
------------------------------------------------------------------------------
--- cms:source-revision (original)
+++ cms:source-revision Tue Apr  9 19:06:13 2013
@@ -1 +1 @@
-1466103
+1466176

Propchange: websites/staging/ctakes/trunk/content/
------------------------------------------------------------------------------
--- cms:source-revision (original)
+++ cms:source-revision Tue Apr  9 19:06:13 2013
@@ -1 +1 @@
-1466103
+1466176

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/allclasses-frame.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/allclasses-frame.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/allclasses-frame.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:20 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:45 EDT 2013 -->
 <TITLE>
 All Classes
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">
 
@@ -1153,10 +1153,6 @@ All Classes
 <BR>
 <A HREF="org/apache/ctakes/dictionary/lookup/filter/MetaDataPostLookupFilterImpl.html" title="class in org.apache.ctakes.dictionary.lookup.filter" target="classFrame">MetaDataPostLookupFilterImpl</A>
 <BR>
-<A HREF="edu/mayo/bmi/lookup/type/MetaHeader.html" title="class in edu.mayo.bmi.lookup.type" target="classFrame">MetaHeader</A>
-<BR>
-<A HREF="edu/mayo/bmi/lookup/type/MetaHeader_Type.html" title="class in edu.mayo.bmi.lookup.type" target="classFrame">MetaHeader_Type</A>
-<BR>
 <A HREF="org/apache/ctakes/coreference/ae/MipacqMarkableCreator.html" title="class in org.apache.ctakes.coreference.ae" target="classFrame">MipacqMarkableCreator</A>
 <BR>
 <A HREF="org/apache/ctakes/coreference/ae/MipacqMarkableExpander.html" title="class in org.apache.ctakes.coreference.ae" target="classFrame">MipacqMarkableExpander</A>

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/allclasses-noframe.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/allclasses-noframe.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/allclasses-noframe.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:20 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:45 EDT 2013 -->
 <TITLE>
 All Classes
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">
 
@@ -1153,10 +1153,6 @@ All Classes
 <BR>
 <A HREF="org/apache/ctakes/dictionary/lookup/filter/MetaDataPostLookupFilterImpl.html" title="class in org.apache.ctakes.dictionary.lookup.filter">MetaDataPostLookupFilterImpl</A>
 <BR>
-<A HREF="edu/mayo/bmi/lookup/type/MetaHeader.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader</A>
-<BR>
-<A HREF="edu/mayo/bmi/lookup/type/MetaHeader_Type.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader_Type</A>
-<BR>
 <A HREF="org/apache/ctakes/coreference/ae/MipacqMarkableCreator.html" title="class in org.apache.ctakes.coreference.ae">MipacqMarkableCreator</A>
 <BR>
 <A HREF="org/apache/ctakes/coreference/ae/MipacqMarkableExpander.html" title="class in org.apache.ctakes.coreference.ae">MipacqMarkableExpander</A>

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/constant-values.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/constant-values.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/constant-values.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:08:39 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:08 EDT 2013 -->
 <TITLE>
 Constant Field Values
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">
 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/deprecated-list.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/deprecated-list.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/deprecated-list.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:20 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:44 EDT 2013 -->
 <TITLE>
 Deprecated List
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">
 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/help-doc.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/help-doc.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/help-doc.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:21 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:45 EDT 2013 -->
 <TITLE>
 API Help
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">
 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-1.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-1.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-1.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:19 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:43 EDT 2013 -->
 <TITLE>
 A-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 
@@ -201,8 +201,8 @@ Static method in class org.apache.ctakes
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADJP.html" title="class in org.apache.ctakes.typesystem.type.syntax"><B>ADJP</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/syntax/package-summary.html">org.apache.ctakes.typesystem.type.syntax</A><DD>An adjective phrase
 Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADJP
- Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADJP.html#ADJP()"><B>ADJP()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADJP.html#ADJP()"><B>ADJP()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.syntax.<A HREF="../org/apache/ctakes/typesystem/type/syntax/ADJP.html" title="class in org.apache.ctakes.typesystem.type.syntax">ADJP</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADJP.html#ADJP(int, org.apache.uima.jcas.cas.TOP_Type)"><B>ADJP(int, TOP_Type)</B></A> - 
@@ -216,7 +216,7 @@ Constructor for class org.apache.ctakes.
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADJP_Type.html" title="class in org.apache.ctakes.typesystem.type.syntax"><B>ADJP_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/syntax/package-summary.html">org.apache.ctakes.typesystem.type.syntax</A><DD>An adjective phrase
 Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADJP
- Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADJP_Type.html#ADJP_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ADJP_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADJP_Type.html#ADJP_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ADJP_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.syntax.<A HREF="../org/apache/ctakes/typesystem/type/syntax/ADJP_Type.html" title="class in org.apache.ctakes.typesystem.type.syntax">ADJP_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/assertion/medfacts/i2b2/api/CharacterOffsetToLineTokenConverterCtakesImpl.html#adjustOffsetToBestMatch(int)"><B>adjustOffsetToBestMatch(int)</B></A> - 
@@ -224,8 +224,8 @@ Method in class org.apache.ctakes.assert
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADVP.html" title="class in org.apache.ctakes.typesystem.type.syntax"><B>ADVP</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/syntax/package-summary.html">org.apache.ctakes.typesystem.type.syntax</A><DD>An adverb phrase
 Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADVP
- Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADVP.html#ADVP()"><B>ADVP()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADVP.html#ADVP()"><B>ADVP()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.syntax.<A HREF="../org/apache/ctakes/typesystem/type/syntax/ADVP.html" title="class in org.apache.ctakes.typesystem.type.syntax">ADVP</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADVP.html#ADVP(int, org.apache.uima.jcas.cas.TOP_Type)"><B>ADVP(int, TOP_Type)</B></A> - 
@@ -239,7 +239,7 @@ Constructor for class org.apache.ctakes.
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADVP_Type.html" title="class in org.apache.ctakes.typesystem.type.syntax"><B>ADVP_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/syntax/package-summary.html">org.apache.ctakes.typesystem.type.syntax</A><DD>An adverb phrase
 Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADVP
- Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADVP_Type.html#ADVP_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ADVP_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/ADVP_Type.html#ADVP_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ADVP_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.syntax.<A HREF="../org/apache/ctakes/typesystem/type/syntax/ADVP_Type.html" title="class in org.apache.ctakes.typesystem.type.syntax">ADVP_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/drugner/elements/FormElement.html#AEROSOL"><B>AEROSOL</B></A> - 
@@ -257,8 +257,8 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/Affects_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>Affects_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>A UMLS relation between clinical elements.<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/Affects_Type.html#Affects_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>Affects_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/Affects_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">Affects_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>AffectsTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation.html#AffectsTextRelation()"><B>AffectsTextRelation()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>AffectsTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation.html#AffectsTextRelation()"><B>AffectsTextRelation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">AffectsTextRelation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation.html#AffectsTextRelation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>AffectsTextRelation(int, TOP_Type)</B></A> - 
@@ -267,7 +267,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation.html#AffectsTextRelation(org.apache.uima.jcas.JCas)"><B>AffectsTextRelation(JCas)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">AffectsTextRelation</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>AffectsTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation_Type.html#AffectsTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>AffectsTextRelation_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>AffectsTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation_Type.html#AffectsTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>AffectsTextRelation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/AffectsTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">AffectsTextRelation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/drugner/cc/ConsumeNamedEntityRecordModel.html#al"><B>al</B></A> - 
@@ -506,8 +506,8 @@ Static method in class org.apache.ctakes
 <DT><A HREF="../org/apache/ctakes/utils/wiki/ApproximateMath.html#asqrt(double)"><B>asqrt(double)</B></A> - 
 Static method in class org.apache.ctakes.utils.wiki.<A HREF="../org/apache/ctakes/utils/wiki/ApproximateMath.html" title="class in org.apache.ctakes.utils.wiki">ApproximateMath</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion.html" title="class in org.apache.ctakes.assertion.medfacts.types"><B>Assertion</B></A> - Class in <A HREF="../org/apache/ctakes/assertion/medfacts/types/package-summary.html">org.apache.ctakes.assertion.medfacts.types</A><DD>Updated by JCasGen Mon Apr 08 11:58:23 EDT 2013
- XML source: ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion.html#Assertion()"><B>Assertion()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion.html" title="class in org.apache.ctakes.assertion.medfacts.types"><B>Assertion</B></A> - Class in <A HREF="../org/apache/ctakes/assertion/medfacts/types/package-summary.html">org.apache.ctakes.assertion.medfacts.types</A><DD>Updated by JCasGen Tue Apr 09 12:44:13 EDT 2013
+ XML source: trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion.html#Assertion()"><B>Assertion()</B></A> - 
 Constructor for class org.apache.ctakes.assertion.medfacts.types.<A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion.html" title="class in org.apache.ctakes.assertion.medfacts.types">Assertion</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion.html#Assertion(int, org.apache.uima.jcas.cas.TOP_Type)"><B>Assertion(int, TOP_Type)</B></A> - 
@@ -519,7 +519,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion.html#Assertion(org.apache.uima.jcas.JCas, int, int)"><B>Assertion(JCas, int, int)</B></A> - 
 Constructor for class org.apache.ctakes.assertion.medfacts.types.<A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion.html" title="class in org.apache.ctakes.assertion.medfacts.types">Assertion</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion_Type.html" title="class in org.apache.ctakes.assertion.medfacts.types"><B>Assertion_Type</B></A> - Class in <A HREF="../org/apache/ctakes/assertion/medfacts/types/package-summary.html">org.apache.ctakes.assertion.medfacts.types</A><DD>Updated by JCasGen Mon Apr 08 11:58:23 EDT 2013<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion_Type.html#Assertion_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>Assertion_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion_Type.html" title="class in org.apache.ctakes.assertion.medfacts.types"><B>Assertion_Type</B></A> - Class in <A HREF="../org/apache/ctakes/assertion/medfacts/types/package-summary.html">org.apache.ctakes.assertion.medfacts.types</A><DD>Updated by JCasGen Tue Apr 09 12:44:13 EDT 2013<DT><A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion_Type.html#Assertion_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>Assertion_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.assertion.medfacts.types.<A HREF="../org/apache/ctakes/assertion/medfacts/types/Assertion_Type.html" title="class in org.apache.ctakes.assertion.medfacts.types">Assertion_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/assertion/medfacts/AssertionAnalysisEngine.html" title="class in org.apache.ctakes.assertion.medfacts"><B>AssertionAnalysisEngine</B></A> - Class in <A HREF="../org/apache/ctakes/assertion/medfacts/package-summary.html">org.apache.ctakes.assertion.medfacts</A><DD>&nbsp;<DT><A HREF="../org/apache/ctakes/assertion/medfacts/AssertionAnalysisEngine.html#AssertionAnalysisEngine()"><B>AssertionAnalysisEngine()</B></A> - 
@@ -534,8 +534,8 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.<A HREF="../org/apache/ctakes/assertion/medfacts/cleartk/AssertionComponents.html" title="class in org.apache.ctakes.assertion.medfacts.cleartk">AssertionComponents</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/temporary/assertion/AssertionCuePhraseAnnotation.html" title="class in org.apache.ctakes.typesystem.type.temporary.assertion"><B>AssertionCuePhraseAnnotation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/temporary/assertion/package-summary.html">org.apache.ctakes.typesystem.type.temporary.assertion</A><DD>A cue phrase indicating potential negation, uncertainty, or conditional
- Updated by JCasGen Mon Apr 08 11:58:07 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/temporary/assertion/AssertionCuePhraseAnnotation.html#AssertionCuePhraseAnnotation()"><B>AssertionCuePhraseAnnotation()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/temporary/assertion/AssertionCuePhraseAnnotation.html#AssertionCuePhraseAnnotation()"><B>AssertionCuePhraseAnnotation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.temporary.assertion.<A HREF="../org/apache/ctakes/typesystem/type/temporary/assertion/AssertionCuePhraseAnnotation.html" title="class in org.apache.ctakes.typesystem.type.temporary.assertion">AssertionCuePhraseAnnotation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/temporary/assertion/AssertionCuePhraseAnnotation.html#AssertionCuePhraseAnnotation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>AssertionCuePhraseAnnotation(int, TOP_Type)</B></A> - 
@@ -548,7 +548,7 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.typesystem.type.temporary.assertion.<A HREF="../org/apache/ctakes/typesystem/type/temporary/assertion/AssertionCuePhraseAnnotation.html" title="class in org.apache.ctakes.typesystem.type.temporary.assertion">AssertionCuePhraseAnnotation</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/temporary/assertion/AssertionCuePhraseAnnotation_Type.html" title="class in org.apache.ctakes.typesystem.type.temporary.assertion"><B>AssertionCuePhraseAnnotation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/temporary/assertion/package-summary.html">org.apache.ctakes.typesystem.type.temporary.assertion</A><DD>A cue phrase indicating potential negation, uncertainty, or conditional
- Updated by JCasGen Mon Apr 08 11:58:07 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/temporary/assertion/AssertionCuePhraseAnnotation_Type.html#AssertionCuePhraseAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>AssertionCuePhraseAnnotation_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/temporary/assertion/AssertionCuePhraseAnnotation_Type.html#AssertionCuePhraseAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>AssertionCuePhraseAnnotation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.temporary.assertion.<A HREF="../org/apache/ctakes/typesystem/type/temporary/assertion/AssertionCuePhraseAnnotation_Type.html" title="class in org.apache.ctakes.typesystem.type.temporary.assertion">AssertionCuePhraseAnnotation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.html" title="class in org.apache.ctakes.dictionary.lookup.ae"><B>AssertionCuePhraseConsumerImpl</B></A> - Class in <A HREF="../org/apache/ctakes/dictionary/lookup/ae/package-summary.html">org.apache.ctakes.dictionary.lookup.ae</A><DD>Implementation that takes Rxnorm dictionary lookup hits and stores only the
@@ -1000,8 +1000,8 @@ Variable in class org.apache.ctakes.util
 <DT><A HREF="../org/apache/ctakes/utils/xcas_comparison/Const.html#ATTRIBUTES_TO_IGNORE"><B>ATTRIBUTES_TO_IGNORE</B></A> - 
 Static variable in class org.apache.ctakes.utils.xcas_comparison.<A HREF="../org/apache/ctakes/utils/xcas_comparison/Const.html" title="class in org.apache.ctakes.utils.xcas_comparison">Const</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm"><B>AttributeValue</B></A> - Class in <A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/package-summary.html">org.apache.ctakes.smokingstatus.type.libsvm</A><DD>Updated by JCasGen Mon Apr 08 11:57:42 EDT 2013
- XML source: ctakes-smoking-status-res/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue.html#AttributeValue()"><B>AttributeValue()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm"><B>AttributeValue</B></A> - Class in <A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/package-summary.html">org.apache.ctakes.smokingstatus.type.libsvm</A><DD>Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013
+ XML source: trunk/ctakes-smoking-status-res/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue.html#AttributeValue()"><B>AttributeValue()</B></A> - 
 Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.<A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm">AttributeValue</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue.html#AttributeValue(int, org.apache.uima.jcas.cas.TOP_Type)"><B>AttributeValue(int, TOP_Type)</B></A> - 
@@ -1013,7 +1013,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue.html#AttributeValue(org.apache.uima.jcas.JCas, int, int)"><B>AttributeValue(JCas, int, int)</B></A> - 
 Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.<A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm">AttributeValue</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue_Type.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm"><B>AttributeValue_Type</B></A> - Class in <A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/package-summary.html">org.apache.ctakes.smokingstatus.type.libsvm</A><DD>Updated by JCasGen Mon Apr 08 11:57:42 EDT 2013<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue_Type.html#AttributeValue_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>AttributeValue_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue_Type.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm"><B>AttributeValue_Type</B></A> - Class in <A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/package-summary.html">org.apache.ctakes.smokingstatus.type.libsvm</A><DD>Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013<DT><A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue_Type.html#AttributeValue_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>AttributeValue_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.<A HREF="../org/apache/ctakes/smokingstatus/type/libsvm/AttributeValue_Type.html" title="class in org.apache.ctakes.smokingstatus.type.libsvm">AttributeValue_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 </DL>

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-10.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-10.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-10.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:19 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:44 EDT 2013 -->
 <TITLE>
 J-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-11.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-11.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-11.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:19 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:44 EDT 2013 -->
 <TITLE>
 K-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-12.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-12.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-12.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:19 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:44 EDT 2013 -->
 <TITLE>
 L-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 
@@ -425,8 +425,8 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOf_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>LocationOf_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>A UMLS relation between clinical elements.<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOf_Type.html#LocationOf_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>LocationOf_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOf_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">LocationOf_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>LocationOfTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation.html#LocationOfTextRelation()"><B>LocationOfTextRelation()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>LocationOfTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation.html#LocationOfTextRelation()"><B>LocationOfTextRelation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">LocationOfTextRelation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation.html#LocationOfTextRelation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>LocationOfTextRelation(int, TOP_Type)</B></A> - 
@@ -435,7 +435,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation.html#LocationOfTextRelation(org.apache.uima.jcas.JCas)"><B>LocationOfTextRelation(JCas)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">LocationOfTextRelation</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>LocationOfTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation_Type.html#LocationOfTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>LocationOfTextRelation_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>LocationOfTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation_Type.html#LocationOfTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>LocationOfTextRelation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/LocationOfTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">LocationOfTextRelation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.html#logClassificationErrors(java.io.File, java.lang.String)"><B>logClassificationErrors(File, String)</B></A> - 
@@ -579,8 +579,8 @@ Static variable in class org.apache.ctak
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/LST.html" title="class in org.apache.ctakes.typesystem.type.syntax"><B>LST</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/syntax/package-summary.html">org.apache.ctakes.typesystem.type.syntax</A><DD>A list item, usually intra-sentential
 Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST
- Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/LST.html#LST()"><B>LST()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/LST.html#LST()"><B>LST()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.syntax.<A HREF="../org/apache/ctakes/typesystem/type/syntax/LST.html" title="class in org.apache.ctakes.typesystem.type.syntax">LST</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/LST.html#LST(int, org.apache.uima.jcas.cas.TOP_Type)"><B>LST(int, TOP_Type)</B></A> - 
@@ -594,7 +594,7 @@ Constructor for class org.apache.ctakes.
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/LST_Type.html" title="class in org.apache.ctakes.typesystem.type.syntax"><B>LST_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/syntax/package-summary.html">org.apache.ctakes.typesystem.type.syntax</A><DD>A list item, usually intra-sentential
 Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST
- Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/LST_Type.html#LST_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>LST_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/syntax/LST_Type.html#LST_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>LST_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.syntax.<A HREF="../org/apache/ctakes/typesystem/type/syntax/LST_Type.html" title="class in org.apache.ctakes.typesystem.type.syntax">LST_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.html#LT_KEY_USE_FOR_LOOKUP"><B>LT_KEY_USE_FOR_LOOKUP</B></A> - 

Modified: websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-13.html
==============================================================================
--- websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-13.html (original)
+++ websites/staging/ctakes/trunk/content/apidocs/trunk/index-files/index-13.html Tue Apr  9 19:06:13 2013
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_26) on Mon Apr 08 15:09:20 EDT 2013 -->
+<!-- Generated by javadoc (build 1.6.0_26) on Tue Apr 09 14:33:44 EDT 2013 -->
 <TITLE>
 M-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2013-04-08">
+<META NAME="date" CONTENT="2013-04-09">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 
@@ -344,8 +344,8 @@ Static method in class org.mitre.medfact
 <DT><A HREF="../org/apache/ctakes/smokingstatus/MLutil/GenerateTrainingData.html#makeFeatures(java.lang.String)"><B>makeFeatures(String)</B></A> - 
 Method in class org.apache.ctakes.smokingstatus.MLutil.<A HREF="../org/apache/ctakes/smokingstatus/MLutil/GenerateTrainingData.html" title="class in org.apache.ctakes.smokingstatus.MLutil">GenerateTrainingData</A>
 <DD>set "features" - list of features.
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ManagesTreatsTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation.html#ManagesTreatsTextRelation()"><B>ManagesTreatsTextRelation()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ManagesTreatsTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation.html#ManagesTreatsTextRelation()"><B>ManagesTreatsTextRelation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">ManagesTreatsTextRelation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation.html#ManagesTreatsTextRelation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>ManagesTreatsTextRelation(int, TOP_Type)</B></A> - 
@@ -354,7 +354,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation.html#ManagesTreatsTextRelation(org.apache.uima.jcas.JCas)"><B>ManagesTreatsTextRelation(JCas)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">ManagesTreatsTextRelation</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ManagesTreatsTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation_Type.html#ManagesTreatsTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ManagesTreatsTextRelation_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ManagesTreatsTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation_Type.html#ManagesTreatsTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ManagesTreatsTextRelation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/ManagesTreatsTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">ManagesTreatsTextRelation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOf.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ManifestationOf</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>A UMLS relation between clinical elements.<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOf.html#ManifestationOf()"><B>ManifestationOf()</B></A> - 
@@ -369,8 +369,8 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOf_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ManifestationOf_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>A UMLS relation between clinical elements.<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOf_Type.html#ManifestationOf_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ManifestationOf_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOf_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">ManifestationOf_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ManifestationOfTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation.html#ManifestationOfTextRelation()"><B>ManifestationOfTextRelation()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ManifestationOfTextRelation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation.html#ManifestationOfTextRelation()"><B>ManifestationOfTextRelation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">ManifestationOfTextRelation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation.html#ManifestationOfTextRelation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>ManifestationOfTextRelation(int, TOP_Type)</B></A> - 
@@ -379,7 +379,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation.html#ManifestationOfTextRelation(org.apache.uima.jcas.JCas)"><B>ManifestationOfTextRelation(JCas)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation.html" title="class in org.apache.ctakes.typesystem.type.relation">ManifestationOfTextRelation</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ManifestationOfTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Mon Apr 08 11:58:06 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation_Type.html#ManifestationOfTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ManifestationOfTextRelation_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation"><B>ManifestationOfTextRelation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/relation/package-summary.html">org.apache.ctakes.typesystem.type.relation</A><DD>Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation_Type.html#ManifestationOfTextRelation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>ManifestationOfTextRelation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.relation.<A HREF="../org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation_Type.html" title="class in org.apache.ctakes.typesystem.type.relation">ManifestationOfTextRelation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/utils/struct/CounterTreeMap.html#map"><B>map</B></A> - 
@@ -394,8 +394,8 @@ Static method in class org.apache.ctakes
 <DT><A HREF="../org/apache/ctakes/relationextractor/cr/Mapper.html" title="class in org.apache.ctakes.relationextractor.cr"><B>Mapper</B></A> - Class in <A HREF="../org/apache/ctakes/relationextractor/cr/package-summary.html">org.apache.ctakes.relationextractor.cr</A><DD>Map various category names to their ctakes integer id.<DT><A HREF="../org/apache/ctakes/relationextractor/cr/Mapper.html#Mapper()"><B>Mapper()</B></A> - 
 Constructor for class org.apache.ctakes.relationextractor.cr.<A HREF="../org/apache/ctakes/relationextractor/cr/Mapper.html" title="class in org.apache.ctakes.relationextractor.cr">Mapper</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/coreference/type/Markable.html" title="class in org.apache.ctakes.coreference.type"><B>Markable</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:25 EDT 2013
- XML source: ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/coreference/type/Markable.html#Markable()"><B>Markable()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/coreference/type/Markable.html" title="class in org.apache.ctakes.coreference.type"><B>Markable</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013
+ XML source: trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/coreference/type/Markable.html#Markable()"><B>Markable()</B></A> - 
 Constructor for class org.apache.ctakes.coreference.type.<A HREF="../org/apache/ctakes/coreference/type/Markable.html" title="class in org.apache.ctakes.coreference.type">Markable</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/coreference/type/Markable.html#Markable(int, org.apache.uima.jcas.cas.TOP_Type)"><B>Markable(int, TOP_Type)</B></A> - 
@@ -407,7 +407,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/coreference/type/Markable.html#Markable(org.apache.uima.jcas.JCas, int, int)"><B>Markable(JCas, int, int)</B></A> - 
 Constructor for class org.apache.ctakes.coreference.type.<A HREF="../org/apache/ctakes/coreference/type/Markable.html" title="class in org.apache.ctakes.coreference.type">Markable</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/coreference/type/Markable_Type.html" title="class in org.apache.ctakes.coreference.type"><B>Markable_Type</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:25 EDT 2013<DT><A HREF="../org/apache/ctakes/coreference/type/Markable_Type.html#Markable_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>Markable_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/coreference/type/Markable_Type.html" title="class in org.apache.ctakes.coreference.type"><B>Markable_Type</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013<DT><A HREF="../org/apache/ctakes/coreference/type/Markable_Type.html#Markable_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>Markable_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.coreference.type.<A HREF="../org/apache/ctakes/coreference/type/Markable_Type.html" title="class in org.apache.ctakes.coreference.type">Markable_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/coreference/util/MarkableDepUtils.html" title="class in org.apache.ctakes.coreference.util"><B>MarkableDepUtils</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/util/package-summary.html">org.apache.ctakes.coreference.util</A><DD>&nbsp;<DT><A HREF="../org/apache/ctakes/coreference/util/MarkableDepUtils.html#MarkableDepUtils()"><B>MarkableDepUtils()</B></A> - 
@@ -419,8 +419,8 @@ Static method in class org.apache.ctakes
 <DT><A HREF="../org/apache/ctakes/coreference/util/MarkableTreeUtils.html#markableNode(org.apache.uima.jcas.JCas, int, int)"><B>markableNode(JCas, int, int)</B></A> - 
 Static method in class org.apache.ctakes.coreference.util.<A HREF="../org/apache/ctakes/coreference/util/MarkableTreeUtils.html" title="class in org.apache.ctakes.coreference.util">MarkableTreeUtils</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePair.html" title="class in org.apache.ctakes.coreference.type"><B>MarkablePair</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:25 EDT 2013
- XML source: ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePair.html#MarkablePair()"><B>MarkablePair()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePair.html" title="class in org.apache.ctakes.coreference.type"><B>MarkablePair</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013
+ XML source: trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePair.html#MarkablePair()"><B>MarkablePair()</B></A> - 
 Constructor for class org.apache.ctakes.coreference.type.<A HREF="../org/apache/ctakes/coreference/type/MarkablePair.html" title="class in org.apache.ctakes.coreference.type">MarkablePair</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePair.html#MarkablePair(int, org.apache.uima.jcas.cas.TOP_Type)"><B>MarkablePair(int, TOP_Type)</B></A> - 
@@ -429,11 +429,11 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePair.html#MarkablePair(org.apache.uima.jcas.JCas)"><B>MarkablePair(JCas)</B></A> - 
 Constructor for class org.apache.ctakes.coreference.type.<A HREF="../org/apache/ctakes/coreference/type/MarkablePair.html" title="class in org.apache.ctakes.coreference.type">MarkablePair</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePair_Type.html" title="class in org.apache.ctakes.coreference.type"><B>MarkablePair_Type</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:25 EDT 2013<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePair_Type.html#MarkablePair_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>MarkablePair_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePair_Type.html" title="class in org.apache.ctakes.coreference.type"><B>MarkablePair_Type</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePair_Type.html#MarkablePair_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>MarkablePair_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.coreference.type.<A HREF="../org/apache/ctakes/coreference/type/MarkablePair_Type.html" title="class in org.apache.ctakes.coreference.type">MarkablePair_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
-<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet.html" title="class in org.apache.ctakes.coreference.type"><B>MarkablePairSet</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:25 EDT 2013
- XML source: ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet.html#MarkablePairSet()"><B>MarkablePairSet()</B></A> - 
+<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet.html" title="class in org.apache.ctakes.coreference.type"><B>MarkablePairSet</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013
+ XML source: trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet.html#MarkablePairSet()"><B>MarkablePairSet()</B></A> - 
 Constructor for class org.apache.ctakes.coreference.type.<A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet.html" title="class in org.apache.ctakes.coreference.type">MarkablePairSet</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet.html#MarkablePairSet(int, org.apache.uima.jcas.cas.TOP_Type)"><B>MarkablePairSet(int, TOP_Type)</B></A> - 
@@ -445,7 +445,7 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet.html#MarkablePairSet(org.apache.uima.jcas.JCas, int, int)"><B>MarkablePairSet(JCas, int, int)</B></A> - 
 Constructor for class org.apache.ctakes.coreference.type.<A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet.html" title="class in org.apache.ctakes.coreference.type">MarkablePairSet</A>
 <DD>&nbsp;
-<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet_Type.html" title="class in org.apache.ctakes.coreference.type"><B>MarkablePairSet_Type</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:25 EDT 2013<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet_Type.html#MarkablePairSet_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>MarkablePairSet_Type(JCas, Type)</B></A> - 
+<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet_Type.html" title="class in org.apache.ctakes.coreference.type"><B>MarkablePairSet_Type</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/type/package-summary.html">org.apache.ctakes.coreference.type</A><DD>Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013<DT><A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet_Type.html#MarkablePairSet_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>MarkablePairSet_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.coreference.type.<A HREF="../org/apache/ctakes/coreference/type/MarkablePairSet_Type.html" title="class in org.apache.ctakes.coreference.type">MarkablePairSet_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/coreference/ae/MarkableProb.html" title="class in org.apache.ctakes.coreference.ae"><B>MarkableProb</B></A> - Class in <A HREF="../org/apache/ctakes/coreference/ae/package-summary.html">org.apache.ctakes.coreference.ae</A><DD>&nbsp;<DT><A HREF="../org/apache/ctakes/coreference/ae/MarkableProb.html#MarkableProb(org.apache.ctakes.coreference.type.Markable, java.lang.Double)"><B>MarkableProb(Markable, Double)</B></A> - 
@@ -595,8 +595,8 @@ Static variable in class org.apache.ctak
 Static variable in class org.apache.ctakes.preprocessor.<A HREF="../org/apache/ctakes/preprocessor/ClinicalNotePreProcessor.html" title="class in org.apache.ctakes.preprocessor">ClinicalNotePreProcessor</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MeasurementAnnotation.html" title="class in org.apache.ctakes.typesystem.type.textsem"><B>MeasurementAnnotation</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/textsem/package-summary.html">org.apache.ctakes.typesystem.type.textsem</A><DD>Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation
- Updated by JCasGen Mon Apr 08 11:58:08 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MeasurementAnnotation.html#MeasurementAnnotation()"><B>MeasurementAnnotation()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MeasurementAnnotation.html#MeasurementAnnotation()"><B>MeasurementAnnotation()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/MeasurementAnnotation.html" title="class in org.apache.ctakes.typesystem.type.textsem">MeasurementAnnotation</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MeasurementAnnotation.html#MeasurementAnnotation(int, org.apache.uima.jcas.cas.TOP_Type)"><B>MeasurementAnnotation(int, TOP_Type)</B></A> - 
@@ -609,7 +609,7 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/MeasurementAnnotation.html" title="class in org.apache.ctakes.typesystem.type.textsem">MeasurementAnnotation</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MeasurementAnnotation_Type.html" title="class in org.apache.ctakes.typesystem.type.textsem"><B>MeasurementAnnotation_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/textsem/package-summary.html">org.apache.ctakes.typesystem.type.textsem</A><DD>Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation
- Updated by JCasGen Mon Apr 08 11:58:08 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MeasurementAnnotation_Type.html#MeasurementAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>MeasurementAnnotation_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MeasurementAnnotation_Type.html#MeasurementAnnotation_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>MeasurementAnnotation_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/MeasurementAnnotation_Type.html" title="class in org.apache.ctakes.typesystem.type.textsem">MeasurementAnnotation_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/core/fsm/machine/MeasurementFSM.html" title="class in org.apache.ctakes.core.fsm.machine"><B>MeasurementFSM</B></A> - Class in <A HREF="../org/apache/ctakes/core/fsm/machine/package-summary.html">org.apache.ctakes.core.fsm.machine</A><DD>Uses one or more finite state machines to detect measurements in the given
@@ -704,8 +704,8 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationDosageModifier_Type.html" title="class in org.apache.ctakes.typesystem.type.textsem">MedicationDosageModifier_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/typesystem/type/refsem/MedicationDuration.html" title="class in org.apache.ctakes.typesystem.type.refsem"><B>MedicationDuration</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/refsem/package-summary.html">org.apache.ctakes.typesystem.type.refsem</A><DD>The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
- Updated by JCasGen Mon Apr 08 11:58:04 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/refsem/MedicationDuration.html#MedicationDuration()"><B>MedicationDuration()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/refsem/MedicationDuration.html#MedicationDuration()"><B>MedicationDuration()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.refsem.<A HREF="../org/apache/ctakes/typesystem/type/refsem/MedicationDuration.html" title="class in org.apache.ctakes.typesystem.type.refsem">MedicationDuration</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/refsem/MedicationDuration.html#MedicationDuration(int, org.apache.uima.jcas.cas.TOP_Type)"><B>MedicationDuration(int, TOP_Type)</B></A> - 
@@ -715,12 +715,12 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.typesystem.type.refsem.<A HREF="../org/apache/ctakes/typesystem/type/refsem/MedicationDuration.html" title="class in org.apache.ctakes.typesystem.type.refsem">MedicationDuration</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/refsem/MedicationDuration_Type.html" title="class in org.apache.ctakes.typesystem.type.refsem"><B>MedicationDuration_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/refsem/package-summary.html">org.apache.ctakes.typesystem.type.refsem</A><DD>The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
- Updated by JCasGen Mon Apr 08 11:58:05 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/refsem/MedicationDuration_Type.html#MedicationDuration_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>MedicationDuration_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/refsem/MedicationDuration_Type.html#MedicationDuration_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>MedicationDuration_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.refsem.<A HREF="../org/apache/ctakes/typesystem/type/refsem/MedicationDuration_Type.html" title="class in org.apache.ctakes.typesystem.type.refsem">MedicationDuration_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationDurationModifier.html" title="class in org.apache.ctakes.typesystem.type.textsem"><B>MedicationDurationModifier</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/textsem/package-summary.html">org.apache.ctakes.typesystem.type.textsem</A><DD>The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
- Updated by JCasGen Mon Apr 08 11:58:08 EDT 2013
- XML source: ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationDurationModifier.html#MedicationDurationModifier()"><B>MedicationDurationModifier()</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013
+ XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationDurationModifier.html#MedicationDurationModifier()"><B>MedicationDurationModifier()</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationDurationModifier.html" title="class in org.apache.ctakes.typesystem.type.textsem">MedicationDurationModifier</A>
 <DD>Never called.
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationDurationModifier.html#MedicationDurationModifier(int, org.apache.uima.jcas.cas.TOP_Type)"><B>MedicationDurationModifier(int, TOP_Type)</B></A> - 
@@ -733,7 +733,7 @@ Constructor for class org.apache.ctakes.
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationDurationModifier.html" title="class in org.apache.ctakes.typesystem.type.textsem">MedicationDurationModifier</A>
 <DD>&nbsp;
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationDurationModifier_Type.html" title="class in org.apache.ctakes.typesystem.type.textsem"><B>MedicationDurationModifier_Type</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/textsem/package-summary.html">org.apache.ctakes.typesystem.type.textsem</A><DD>The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
- Updated by JCasGen Mon Apr 08 11:58:08 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationDurationModifier_Type.html#MedicationDurationModifier_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>MedicationDurationModifier_Type(JCas, Type)</B></A> - 
+ Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationDurationModifier_Type.html#MedicationDurationModifier_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>MedicationDurationModifier_Type(JCas, Type)</B></A> - 
 Constructor for class org.apache.ctakes.typesystem.type.textsem.<A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationDurationModifier_Type.html" title="class in org.apache.ctakes.typesystem.type.textsem">MedicationDurationModifier_Type</A>
 <DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationEventMention.html" title="class in org.apache.ctakes.typesystem.type.textsem"><B>MedicationEventMention</B></A> - Class in <A HREF="../org/apache/ctakes/typesystem/type/textsem/package-summary.html">org.apache.ctakes.typesystem.type.textsem</A><DD>A text string (EventMention and therefore IdentifiedAnnotation) that refers to a (Medication) Event.<DT><A HREF="../org/apache/ctakes/typesystem/type/textsem/MedicationEventMention.html#MedicationEventMention()"><B>MedicationEventMention()</B></A> - 
@@ -920,22 +920,6 @@ Constructor for class org.apache.ctakes.
 <DT><A HREF="../org/apache/ctakes/dictionary/lookup/MetaDataHitConst.html" title="interface in org.apache.ctakes.dictionary.lookup"><B>MetaDataHitConst</B></A> - Interface in <A HREF="../org/apache/ctakes/dictionary/lookup/package-summary.html">org.apache.ctakes.dictionary.lookup</A><DD>&nbsp;<DT><A HREF="../org/apache/ctakes/dictionary/lookup/filter/MetaDataPostLookupFilterImpl.html" title="class in org.apache.ctakes.dictionary.lookup.filter"><B>MetaDataPostLookupFilterImpl</B></A> - Class in <A HREF="../org/apache/ctakes/dictionary/lookup/filter/package-summary.html">org.apache.ctakes.dictionary.lookup.filter</A><DD>&nbsp;<DT><A HREF="../org/apache/ctakes/dictionary/lookup/filter/MetaDataPostLookupFilterImpl.html#MetaDataPostLookupFilterImpl(org.apache.ctakes.dictionary.lookup.DictionaryEngine, java.lang.String[], boolean)"><B>MetaDataPostLookupFilterImpl(DictionaryEngine, String[], boolean)</B></A> - 
 Constructor for class org.apache.ctakes.dictionary.lookup.filter.<A HREF="../org/apache/ctakes/dictionary/lookup/filter/MetaDataPostLookupFilterImpl.html" title="class in org.apache.ctakes.dictionary.lookup.filter">MetaDataPostLookupFilterImpl</A>
 <DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html" title="class in edu.mayo.bmi.lookup.type"><B>MetaHeader</B></A> - Class in <A HREF="../edu/mayo/bmi/lookup/type/package-summary.html">edu.mayo.bmi.lookup.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:31 EDT 2013
- XML source: ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html#MetaHeader()"><B>MetaHeader()</B></A> - 
-Constructor for class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader</A>
-<DD>Never called.
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html#MetaHeader(int, org.apache.uima.jcas.cas.TOP_Type)"><B>MetaHeader(int, TOP_Type)</B></A> - 
-Constructor for class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader</A>
-<DD>Internal - constructor used by generator
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html#MetaHeader(org.apache.uima.jcas.JCas)"><B>MetaHeader(JCas)</B></A> - 
-Constructor for class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader</A>
-<DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html#MetaHeader(org.apache.uima.jcas.JCas, int, int)"><B>MetaHeader(JCas, int, int)</B></A> - 
-Constructor for class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader</A>
-<DD>&nbsp;
-<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html" title="class in edu.mayo.bmi.lookup.type"><B>MetaHeader_Type</B></A> - Class in <A HREF="../edu/mayo/bmi/lookup/type/package-summary.html">edu.mayo.bmi.lookup.type</A><DD>Updated by JCasGen Mon Apr 08 11:56:31 EDT 2013<DT><A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html#MetaHeader_Type(org.apache.uima.jcas.JCas, org.apache.uima.cas.Type)"><B>MetaHeader_Type(JCas, Type)</B></A> - 
-Constructor for class edu.mayo.bmi.lookup.type.<A HREF="../edu/mayo/bmi/lookup/type/MetaHeader_Type.html" title="class in edu.mayo.bmi.lookup.type">MetaHeader_Type</A>
-<DD>initialize variables to correspond with Cas Type and Features
 <DT><A HREF="../org/apache/ctakes/dictionary/lookup/DictionaryEngine.html#metaLookup(java.lang.String)"><B>metaLookup(String)</B></A> - 
 Method in class org.apache.ctakes.dictionary.lookup.<A HREF="../org/apache/ctakes/dictionary/lookup/DictionaryEngine.html" title="class in org.apache.ctakes.dictionary.lookup">DictionaryEngine</A>
 <DD>Gets a collection of MetaDataHits from the Dictionary based on the input



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