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From chen...@apache.org
Subject svn commit: r1463641 [25/42] - in /ctakes/trunk: ctakes-assertion-res/ ctakes-assertion-res/.settings/ ctakes-assertion-res/src/ ctakes-assertion-res/src/main/ ctakes-assertion-res/src/main/resources/ ctakes-assertion-res/src/main/resources/org/ ctakes...
Date Tue, 02 Apr 2013 17:44:41 GMT
Propchange: ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/clearparser_models.jar
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Added: ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README (added)
+++ ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README Tue Apr  2 17:41:30 2013
@@ -0,0 +1,49 @@
+############################
+conll-2009-dev-shift-pop.jar
+############################
+The model conll-2009-dev-shift-pop.jar was provided by Jinho Choi and is trained on the 
+development set of the CoNLL 2009 English data.  More information about this data can 
+be found here:
+
+http://ufal.mff.cuni.cz/conll2009-st/train-dev-data.html
+
+The ConLL 2009 shared task is described in the following paper. 
+http://aclweb.org/anthology-new/W/W09/W09-1201.pdf
+
+This model uses the "shift pop" algorithm.  When using this model you should specify the 
+value AbstractDepParser.ALG_SHIFT_POP for the configuration parameter 
+org.cleartk.syntax.dependency.clear.ClearParser.parserAlgorithmName as annotated in 
+ClearParser.  Also, your default memory setting for your JVM may not suffice to load this 
+model.  It can load with the following argument "-Xmx1g". 
+
+On 29 Sep 2011, the model was modified by adding a "1" before the "17" near the end of
+the "lexica" file, to accomodate a change in model format for the 0.4.0-SNAPSHOT release.
+
+#################
+additional models
+#################
+
+There is an additional model available from the ClearTK downloads page:
+
+http://code.google.com/p/cleartk/downloads/list
+
+and is called conll-2009-training-dev-shift-pop.jar.  This model is built from
+both the training data and development data from the CoNLL 2009 shared task (see
+links above).  This model was provided by Jinho Choi as a file named 
+conll-trndev-sp.mod.3.  This model is very large and expands considerably in memory. 
+You will need at least 8GB (gigabytes) to load it and run it.     
+
+#####
+Notes
+#####
+
+- Both models were trained using PennTreebank part-of-speech tags.  So, your input part-of-speech
+tags should match the tags used for training this model.  The part-of-speech tag for punctuation 
+symbols such as "." "," ":" ";" "(" ")" etc. are the symbols themselves (i.e. the part-of-speech tag
+for the token ")" should be ")".)  This may be inconsistent with other PTB-derived tagging schemes that
+may use tags such as "COLON" or "RRB".  Your part-of-speech tags should be modified to be consistent with
+the tagging scheme used here.
+
+- The dependency labeling scheme produced by the models provided here is separate/different from that of
+the Malt parser models used by ClearTK's wrapper of the Malt parser.  You should not assume that 
+the wrapper for the Clear Parser can be used interchangeably with the wrapper for the Malt Parser.      
\ No newline at end of file

Added: ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/conll-2009-dev-shift-pop.jar
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/conll-2009-dev-shift-pop.jar?rev=1463641&view=auto
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Added: ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/dummy.dep.mod.jar
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/dummy.dep.mod.jar?rev=1463641&view=auto
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Added: ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/mayo-dep.jar
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/mayo-dep.jar?rev=1463641&view=auto
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Added: ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README (added)
+++ ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README Tue Apr  2 17:41:30 2013
@@ -0,0 +1,9 @@
+The file wordnet-3.0-lemma-data.jar is a data file that can be used by LemmaAnnotator.  
+It was built using WordNet version 3.0 data and is therefore subject to any 
+restrictions imposed by the WordNet license which appears to be very similar
+to the BSD license (both WordNet software and database.)
+
+http://wordnet.princeton.edu/wordnet/license/
+
+The file wordnet-3.0-lemma-data.jar was obtained directly from the author of
+clear.morph.MorphEnAnalyzer, Jinho Choi, and was called en_dict-1.0.jar. 
\ No newline at end of file

Added: ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/wordnet-3.0-lemma-data.jar
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/wordnet-3.0-lemma-data.jar?rev=1463641&view=auto
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Added: ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README (added)
+++ ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README Tue Apr  2 17:41:30 2013
@@ -0,0 +1,29 @@
+############################
+en_srl_ontonotes.jar
+############################
+The model en_srl_ontonotes.jar was provided by Jinho Choi and is trained on the 
+development set of the OntoNotes corpus version 4.0.  More information about this data can 
+be found here:
+http://www.ldc.upenn.edu/Catalog/docs/LDC2011T03/OntoNotes-Release-4.0.pdf
+
+This model produces semantic role labels over a dependency tree.  So unlike PropBank,
+predicates and arguments only span the head expression.  Knowing the full argument span
+will require traversal of the dependency tree.
+
+#####
+Notes
+#####
+
+- Both models were trained using PennTreebank part-of-speech tags.  So, your input part-of-speech
+tags should match the tags used for training this model.  The part-of-speech tag for punctuation 
+symbols such as "." "," ":" ";" "(" ")" etc. are the symbols themselves (i.e. the part-of-speech tag
+for the token ")" should be ")".)  This may be inconsistent with other PTB-derived tagging schemes that
+may use tags such as "COLON" or "RRB".  Your part-of-speech tags should be modified to be consistent with
+the tagging scheme used here.
+
+- The models also depend on a dependency tree produced by the ClearParser dependency parser.  This should be
+run prior to running ClearParser semantic role labeler.
+
+- The dependency labeling scheme produced by the models provided here is separate/different from that of
+the Malt parser models used by ClearTK's wrapper of the Malt parser.  You should not assume that 
+the wrapper for the Clear Parser can be used interchangeably with the wrapper for the Malt Parser.      
\ No newline at end of file

Added: ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/dummy.srl.mod.jar
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/dummy.srl.mod.jar?rev=1463641&view=auto
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Added: ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/en_srl_ontonotes.jar
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/en_srl_ontonotes.jar?rev=1463641&view=auto
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Added: ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/mayo-srl.jar
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/mayo-srl.jar?rev=1463641&view=auto
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Added: ctakes/trunk/ctakes-dictionary-lookup-res/.classpath
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/.classpath?rev=1463641&view=auto
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--- ctakes/trunk/ctakes-dictionary-lookup-res/.classpath (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/.classpath Tue Apr  2 17:41:30 2013
@@ -0,0 +1,31 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="src" output="target/classes" path="src/main/java">
+		<attributes>
+			<attribute name="optional" value="true"/>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
+		<attributes>
+			<attribute name="optional" value="true"/>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="output" path="target/classes"/>
+</classpath>

Added: ctakes/trunk/ctakes-dictionary-lookup-res/.project
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/.project?rev=1463641&view=auto
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--- ctakes/trunk/ctakes-dictionary-lookup-res/.project (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/.project Tue Apr  2 17:41:30 2013
@@ -0,0 +1,23 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>ctakes-dictionary-lookup-res</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.m2e.core.maven2Builder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+		<nature>org.eclipse.m2e.core.maven2Nature</nature>
+	</natures>
+</projectDescription>

Added: ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.core.resources.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.core.resources.prefs?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.core.resources.prefs (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.core.resources.prefs Tue Apr  2 17:41:30 2013
@@ -0,0 +1,5 @@
+eclipse.preferences.version=1
+encoding//src/main/java=UTF-8
+encoding//src/main/resources=UTF-8
+encoding//src/test/java=UTF-8
+encoding/<project>=UTF-8

Added: ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.jdt.core.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.jdt.core.prefs?rev=1463641&view=auto
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--- ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.jdt.core.prefs (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.jdt.core.prefs Tue Apr  2 17:41:30 2013
@@ -0,0 +1,88 @@
+eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.annotation.missingNonNullByDefaultAnnotation=ignore
+org.eclipse.jdt.core.compiler.annotation.nonnull=org.eclipse.jdt.annotation.NonNull
+org.eclipse.jdt.core.compiler.annotation.nonnullbydefault=org.eclipse.jdt.annotation.NonNullByDefault
+org.eclipse.jdt.core.compiler.annotation.nullable=org.eclipse.jdt.annotation.Nullable
+org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.6
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+org.eclipse.jdt.core.compiler.problem.autoboxing=ignore
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+org.eclipse.jdt.core.compiler.problem.deadCode=warning
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+org.eclipse.jdt.core.compiler.problem.uncheckedTypeOperation=warning
+org.eclipse.jdt.core.compiler.problem.unclosedCloseable=warning
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+org.eclipse.jdt.core.compiler.problem.unhandledWarningToken=warning
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+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownExceptionIncludeDocCommentReference=enabled
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+org.eclipse.jdt.core.compiler.problem.unusedImport=warning
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+org.eclipse.jdt.core.compiler.source=1.6

Added: ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.ltk.core.refactoring.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.ltk.core.refactoring.prefs?rev=1463641&view=auto
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--- ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.ltk.core.refactoring.prefs (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.ltk.core.refactoring.prefs Tue Apr  2 17:41:30 2013
@@ -0,0 +1,2 @@
+eclipse.preferences.version=1
+org.eclipse.ltk.core.refactoring.enable.project.refactoring.history=false

Added: ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.m2e.core.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.m2e.core.prefs?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.m2e.core.prefs (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/.settings/org.eclipse.m2e.core.prefs Tue Apr  2 17:41:30 2013
@@ -0,0 +1,4 @@
+activeProfiles=
+eclipse.preferences.version=1
+resolveWorkspaceProjects=true
+version=1

Added: ctakes/trunk/ctakes-dictionary-lookup-res/LICENSE
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/LICENSE?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-res/LICENSE (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/LICENSE Tue Apr  2 17:41:30 2013
@@ -0,0 +1,202 @@
+
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
+
+      "License" shall mean the terms and conditions for use, reproduction,
+      and distribution as defined by Sections 1 through 9 of this document.
+
+      "Licensor" shall mean the copyright owner or entity authorized by
+      the copyright owner that is granting the License.
+
+      "Legal Entity" shall mean the union of the acting entity and all
+      other entities that control, are controlled by, or are under common
+      control with that entity. For the purposes of this definition,
+      "control" means (i) the power, direct or indirect, to cause the
+      direction or management of such entity, whether by contract or
+      otherwise, or (ii) ownership of fifty percent (50%) or more of the
+      outstanding shares, or (iii) beneficial ownership of such entity.
+
+      "You" (or "Your") shall mean an individual or Legal Entity
+      exercising permissions granted by this License.
+
+      "Source" form shall mean the preferred form for making modifications,
+      including but not limited to software source code, documentation
+      source, and configuration files.
+
+      "Object" form shall mean any form resulting from mechanical
+      transformation or translation of a Source form, including but
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+      any Contribution intentionally submitted for inclusion in the Work
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+   6. Trademarks. This License does not grant permission to use the trade
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+
+   7. Disclaimer of Warranty. Unless required by applicable law or
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+      Contributor provides its Contributions) on an "AS IS" BASIS,
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+   8. Limitation of Liability. In no event and under no legal theory,
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+
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+
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+
+      To apply the Apache License to your work, attach the following
+      boilerplate notice, with the fields enclosed by brackets "[]"
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+   you may not use this file except in compliance with the License.
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+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.

Added: ctakes/trunk/ctakes-dictionary-lookup-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/pom.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-res/pom.xml (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/pom.xml Tue Apr  2 17:41:30 2013
@@ -0,0 +1,32 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+  <modelVersion>4.0.0</modelVersion>
+  <parent>
+    <groupId>org.apache.ctakes</groupId>
+    <artifactId>ctakes</artifactId>
+    <version>3.1.0-SNAPSHOT</version>
+  </parent>
+  <artifactId>ctakes-dictionary-lookup-res</artifactId>
+  <name>Apache cTAKES Resources dictionary-lookup</name>
+  <description>Resources Project for ctakes-dictionary-lookup</description>
+</project>
\ No newline at end of file

Added: ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml Tue Apr  2 17:41:30 2013
@@ -0,0 +1,117 @@
+<?xml version="1.0" encoding="UTF-8"?><taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
+  <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+  <primitive>true</primitive>
+  <annotatorImplementationName>org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator</annotatorImplementationName>
+  <analysisEngineMetaData>
+    <name>AssertionCuePhraseDictionaryLookupAnnotator</name>
+    <description/>
+    <version/>
+    <vendor/>
+    <configurationParameters>
+      <configurationParameter>
+        <name>maxListSize</name>
+        <description>Specifies the maximum number of items to be returned from an lucene query.</description>
+        <type>Integer</type>
+        <multiValued>false</multiValued>
+        <mandatory>false</mandatory>
+      </configurationParameter>
+    </configurationParameters>
+    <configurationParameterSettings>
+      <nameValuePair>
+        <name>maxListSize</name>
+        <value>
+          <integer>2147483647</integer>
+        </value>
+      </nameValuePair>
+    </configurationParameterSettings>
+    <typeSystemDescription/>
+    <typePriorities/>
+    <fsIndexCollection/>
+    <capabilities>
+      <capability>
+        <inputs>
+          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.BaseToken</type>
+          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation</type>
+        </inputs>
+        <outputs>
+          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation</type>
+        </outputs>
+        <languagesSupported/>
+      </capability>
+    </capabilities>
+    <operationalProperties>
+      <modifiesCas>true</modifiesCas>
+      <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
+      <outputsNewCASes>false</outputsNewCASes>
+    </operationalProperties>
+  </analysisEngineMetaData>
+  <externalResourceDependencies>
+    <externalResourceDependency>
+      <key>AssertionCuePhraseIndexReader</key>
+      <description/>
+      <interfaceName>org.apache.ctakes.core.resource.LuceneIndexReaderResource</interfaceName>
+      <optional>false</optional>
+    </externalResourceDependency>
+  </externalResourceDependencies>
+  <resourceManagerConfiguration>
+    <externalResources>
+      <externalResource>
+        <name>AssertionCuePhraseIndex</name>
+        <description/>
+        <configurableDataResourceSpecifier>
+          <url/>
+          <resourceMetaData>
+            <name/>
+            <configurationParameters>
+              <configurationParameter>
+                <name>UseMemoryIndex</name>
+                <type>Boolean</type>
+                <multiValued>false</multiValued>
+                <mandatory>true</mandatory>
+              </configurationParameter>
+              <configurationParameter>
+                <name>IndexDirectory</name>
+                <type>String</type>
+                <multiValued>false</multiValued>
+                <mandatory>true</mandatory>
+              </configurationParameter>
+            </configurationParameters>
+            <configurationParameterSettings>
+              <nameValuePair>
+                <name>UseMemoryIndex</name>
+                <value>
+                  <boolean>true</boolean>
+                </value>
+              </nameValuePair>
+              <nameValuePair>
+                <name>IndexDirectory</name>
+                <value>
+                  <string>org/apache/ctakes/dictionary/lookup/assertion_cue_phrase_index</string>
+                </value>
+              </nameValuePair>
+            </configurationParameterSettings>
+          </resourceMetaData>
+        </configurableDataResourceSpecifier>
+        <implementationName>org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl</implementationName>
+      </externalResource>
+      <externalResource>
+        <name>LookupDescriptorFile</name>
+        <description/>
+        <fileResourceSpecifier>
+          <fileUrl>file:org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml</fileUrl>
+        </fileResourceSpecifier>
+        <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
+      </externalResource>
+    </externalResources>
+    <externalResourceBindings>
+      <externalResourceBinding>
+        <key>LookupDescriptor</key>
+        <resourceName>LookupDescriptorFile</resourceName>
+      </externalResourceBinding>
+      <externalResourceBinding>
+        <key>AssertionCuePhraseIndexReader</key>
+        <resourceName>AssertionCuePhraseIndex</resourceName>
+      </externalResourceBinding>
+    </externalResourceBindings>
+  </resourceManagerConfiguration>
+</taeDescription>

Added: ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml Tue Apr  2 17:41:30 2013
@@ -0,0 +1,162 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<lookupSpecification>
+	<!--  Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+	<dictionaries>
+	
+	  <!--
+		<dictionary id="DICT_UMLS_MS" externalResourceKey="UmlsIndexReader" caseSensitive="false">
+			<implementation>
+				<luceneImpl/>
+			</implementation>
+			<lookupField fieldName="first_word"/>
+			<metaFields>
+				<metaField fieldName="cui"/>
+				<metaField fieldName="tui"/>
+				<metaField fieldName="text"/>
+			</metaFields>
+		</dictionary>
+		-->
+	
+	  <!--
+		<dictionary id="DICT_RXNORM" externalResourceKey="RxnormIndexReader" caseSensitive="false">
+			<implementation>
+				<luceneImpl/>
+			</implementation>
+			<lookupField fieldName="first_word"/>
+			<metaFields>
+				<metaField fieldName="code"/>
+				<metaField fieldName="preferred_designation"/>
+				<metaField fieldName="other_designation"/>
+			</metaFields>
+		</dictionary>
+		-->
+    <dictionary id="DICT_ASSERTION_CUE_PHRASE" externalResourceKey="AssertionCuePhraseIndexReader" caseSensitive="false">
+      <implementation>
+        <luceneImpl/>
+      </implementation>
+      <lookupField fieldName="cuePhrase"/>
+      <metaFields>
+        <metaField fieldName="cuePhrase"/>
+        <metaField fieldName="cuePhraseCategory"/>
+        <metaField fieldName="assertionCuePhraseFamily"/>
+      </metaFields>
+    </dictionary>
+
+	
+	</dictionaries>
+	<!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+	<lookupBindings>
+	
+	  <!--
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_UMLS_MS"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="text"/>
+					<property key="maxPermutationLevel" value="5"/>
+					<!- -	<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> - ->
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>  
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,PRP,PRP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedLuceneConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="SNOMED"/>
+					<property key="cuiMetaField" value="cui"/>
+					<property key="tuiMetaField" value="tui"/>
+					<property key="cuiMappingField" value="cui"/>
+					<property key="snomedCodeMappingField" value="code"/>
+					<!- - the following values are used as TUIs for testing: T_AS, T_PR, T_DD, T_SS - ->
+					<property key="anatomicalSiteTuis" value="T021,T022,T023,T024,T025,T026,T029,T030,T_AS"/>
+					<property key="procedureTuis" value="T059,T060,T061,T_PR"/>
+					<property key="disorderTuis" value="T019,T020,T037,T046,T047,T048,T049,T050,T190,T191,T_DD"/>
+					<property key="findingTuis" value="T033,T034,T040,T041,T042,T043,T044,T045,T046,T056,T057,T184,T_SS"/>
+					<property key="luceneFilterExtResrcKey" value="UmlsIndexReader"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+		-->
+	
+	  <!--
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_RXNORM"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="preferred_designation|other_designation"/>
+					<property key="maxPermutationLevel" value="7"/>
+					<!- -	<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> - ->
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>  
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="RXNORM"/>
+					<property key="codeMetaField" value="code"/>
+					<property key="luceneFilterExtResrcKey" value="OrangeBookIndexReader"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+		-->
+		
+    <lookupBinding>
+      <dictionaryRef idRef="DICT_ASSERTION_CUE_PHRASE"/>
+      <!-- org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl -->
+      <!-- org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl -->
+      <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl">
+        <properties>
+          <property key="textMetaFields" value="cuePhraseCategory"/>
+          <!--  <property key="maxPermutationLevel" value="7"/>  -->
+          <!--  <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+          <!--  org.apache.ctakes.typesystem.type.syntax.Chunk -->
+          <!--  org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation -->
+          <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.syntax.Chunk"/>  
+          <!--  <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/> -->
+        </properties>
+      </lookupInitializer>
+<!--
+      <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+        <properties>
+          <property key="textMetaFields" value="cuePhraseCategory"/>
+          <property key="maxPermutationLevel" value="7"/>
+          <!- -  <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> - ->
+          <!- -  org.apache.ctakes.typesystem.type.syntax.Chunk - ->
+          <!- -  org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation - ->
+          <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.syntax.Chunk"/>  
+          <!- -  <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/> - ->
+        </properties>
+      </lookupInitializer>
+-->
+      <lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.AssertionCuePhraseConsumerImpl">
+        <properties>
+          <!--
+          <property key="codingScheme" value="RXNORM"/>
+          <property key="codeMetaField" value="code"/>
+          -->
+          <property key="luceneFilterExtResrcKey" value="AssertionCuePhraseIndexReader"/>
+        </properties>
+      </lookupConsumer>
+    </lookupBinding>
+
+	</lookupBindings>
+</lookupSpecification>

Added: ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml Tue Apr  2 17:41:30 2013
@@ -0,0 +1,103 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<lookupSpecification>
+	<!--  Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+	<dictionaries>
+	
+		<dictionary id="DICT_UMLS_MS" externalResourceKey="UmlsIndexReader" caseSensitive="false">
+			<implementation>
+				<luceneImpl/>
+			</implementation>
+			<lookupField fieldName="first_word"/>
+			<metaFields>
+				<metaField fieldName="cui"/>
+				<metaField fieldName="tui"/>
+				<metaField fieldName="text"/>
+			</metaFields>
+		</dictionary>
+	
+		<dictionary id="DICT_RXNORM" externalResourceKey="RxnormIndexReader" caseSensitive="false">
+			<implementation>
+				<luceneImpl/>
+			</implementation>
+			<lookupField fieldName="first_word"/>
+			<metaFields>
+				<metaField fieldName="code"/>
+				<metaField fieldName="preferred_designation"/>
+				<metaField fieldName="other_designation"/>
+			</metaFields>
+		</dictionary>
+	
+	</dictionaries>
+	<!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+	<lookupBindings>
+	
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_UMLS_MS"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="text"/>
+					<property key="maxPermutationLevel" value="5"/>
+					<!--	<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>  
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,PRP,PRP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedLuceneConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="SNOMED"/>
+					<property key="cuiMetaField" value="cui"/>
+					<property key="tuiMetaField" value="tui"/>
+					<property key="cuiMappingField" value="cui"/>
+					<property key="snomedCodeMappingField" value="code"/>
+					<!-- the following values are used as TUIs for testing: T_AS, T_PR, T_DD, T_SS -->
+					<property key="anatomicalSiteTuis" value="T021,T022,T023,T024,T025,T026,T029,T030,T_AS"/>
+					<property key="procedureTuis" value="T059,T060,T061,T_PR"/>
+					<property key="disorderTuis" value="T019,T020,T037,T046,T047,T048,T049,T050,T190,T191,T_DD"/>
+					<property key="findingTuis" value="T033,T034,T040,T041,T042,T043,T044,T045,T046,T056,T057,T184,T_SS"/>
+					<property key="luceneFilterExtResrcKey" value="UmlsIndexReader"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+	
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_RXNORM"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="preferred_designation|other_designation"/>
+					<property key="maxPermutationLevel" value="7"/>
+					<!--	<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>  
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="RXNORM"/>
+					<property key="codeMetaField" value="code"/>
+					<property key="luceneFilterExtResrcKey" value="OrangeBookIndexReader"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+		
+	</lookupBindings>
+</lookupSpecification>

Added: ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml Tue Apr  2 17:41:30 2013
@@ -0,0 +1,102 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<lookupSpecification>
+	<!--  Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+	<dictionaries>
+	
+		<dictionary id="DICT_UMLS_MS" externalResourceKey="DbConnection" caseSensitive="false">
+			<implementation>
+				<jdbcImpl tableName="umls_ms_2011ab"/>
+			</implementation>
+			<lookupField fieldName="fword"/>
+			<metaFields>
+				<metaField fieldName="cui"/>
+				<metaField fieldName="tui"/>
+				<metaField fieldName="text"/>
+			</metaFields>
+		</dictionary>
+	
+		<dictionary id="DICT_RXNORM" externalResourceKey="RxnormIndexReader" caseSensitive="false">
+			<implementation>
+				<luceneImpl/>
+			</implementation>
+			<lookupField fieldName="first_word"/>
+			<metaFields>
+				<metaField fieldName="code"/>
+				<metaField fieldName="codeRxNorm"/>
+				<metaField fieldName="preferred_designation"/>
+				<metaField fieldName="other_designation"/>
+			</metaFields>
+		</dictionary>
+	
+	</dictionaries>
+	<!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+	<lookupBindings>
+	
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_UMLS_MS"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="text"/>
+					<property key="maxPermutationLevel" value="7"/>
+					<!--	<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>  
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,IN,LS,MD,PDT,POS,PP,PP$,PRP,PRP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedDbConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="SNOMED"/>
+					<property key="cuiMetaField" value="cui"/>
+					<property key="tuiMetaField" value="tui"/>
+					<property key="anatomicalSiteTuis" value="T021,T022,T023,T024,T025,T026,T029,T030"/>
+					<property key="procedureTuis" value="T059,T060,T061"/>
+					<property key="disorderTuis" value="T019,T020,T037,T046,T047,T048,T049,T050,T190,T191"/>
+					<property key="findingTuis" value="T033,T034,T040,T041,T042,T043,T044,T045,T046,T056,T057,T184"/>
+					<property key="dbConnExtResrcKey" value="DbConnection"/>
+					<property key="mapPrepStmt" value="select code from umls_snomed_map where cui=?"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+	
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_RXNORM"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="preferred_designation|other_designation"/>
+					<property key="maxPermutationLevel" value="7"/>
+					<!--	<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>  
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="RXNORM"/>
+					<property key="codeMetaField" value="codeRxNorm"/> <!-- Use value="code" for UMLS CUIs -->
+					<property key="luceneFilterExtResrcKey" value="OrangeBookIndexReader"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+		
+	</lookupBindings>
+</lookupSpecification>

Added: ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml Tue Apr  2 17:41:30 2013
@@ -0,0 +1,81 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<lookupSpecification>
+	<!--  Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+	<dictionaries>
+		<dictionary id="DICT_CSV_SAMPLE" externalResourceKey="DictionaryFile" caseSensitive="false">
+			<implementation>
+				<csvImpl delimiter="|" indexedFieldNames="0,1"/>
+			</implementation>
+			<lookupField fieldName="0"/>
+			<metaFields>
+				<metaField fieldName="1"/>
+			</metaFields>
+		</dictionary>
+		<dictionary id="DICT_RXNORM" externalResourceKey="RxnormIndexReader" caseSensitive="false">
+			<implementation>
+				<luceneImpl/>
+			</implementation>
+			<lookupField fieldName="first_word"/>
+			<metaFields>
+				<metaField fieldName="code"/>
+				<metaField fieldName="preferred_designation"/>
+				<metaField fieldName="other_designation"/>
+			</metaFields>
+		</dictionary>
+	</dictionaries>
+	<!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+	<lookupBindings>
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_CSV_SAMPLE"/>
+
+<!-- NOTE: Only use if windowAnnotations have small # of tokens, sentences are not a good idea! -->
+
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl">
+				<properties>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.NamedEntityLookupConsumerImpl">
+				<properties>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_RXNORM"/>
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+				<properties>
+					<property key="textMetaFields" value="preferred_designation|other_designation"/>
+					<property key="maxPermutationLevel" value="7"/>
+					<property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>
+					<property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl">
+				<properties>
+					<property key="codingScheme" value="RXNORM"/>
+					<property key="codeMetaField" value="code"/>
+					<property key="luceneFilterExtResrcKey" value="OrangeBookIndexReader"/>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+	</lookupBindings>
+</lookupSpecification>

Added: ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_example_using_CSV.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_example_using_CSV.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_example_using_CSV.xml (added)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_example_using_CSV.xml Tue Apr  2 17:41:30 2013
@@ -0,0 +1,52 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<lookupSpecification>
+	<!--  Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+	<dictionaries>
+		<dictionary id="DICT_CSV_SAMPLE" externalResourceKey="CSV_FILE" caseSensitive="false">
+			<implementation>
+				<csvImpl delimiter="|" indexedFieldNames="0,1"/>
+			</implementation>
+			<lookupField fieldName="0"/>
+			<metaFields>
+				<metaField fieldName="1"/>
+			</metaFields>
+		</dictionary>
+	</dictionaries>
+	<!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+	<lookupBindings>
+		<lookupBinding>
+			<dictionaryRef idRef="DICT_CSV_SAMPLE"/>
+
+<!-- NOTE: Only use if windowAnnotations have small # of tokens, sentences are not a good idea! -->
+
+			<lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl">
+				<properties>
+				</properties>
+			</lookupInitializer>
+			<lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.DebugConsumerImpl">
+				<properties>
+				</properties>
+			</lookupConsumer>
+		</lookupBinding>
+	</lookupBindings>
+</lookupSpecification>

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+++ ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/dictionary1.csv Tue Apr  2 17:41:30 2013
@@ -0,0 +1,16 @@
+ankle|ankle
+aspirin|aspirin
+cm|cm 
+cm|cm is a synonym of a UMLS term Cutaneous Mastocytosis which is in SNOMED but cm is not by itself
+hyperlipidemia|hyperlipidemia
+knee|knee
+knee|knee pain
+ld|ld
+ld|ld SNOMED procedure C0011911
+medical|medical nutrition therapy
+nutrition|nutrition
+nutrition|nutrition therapy
+pain|pain
+pain|pain, chronic
+weight|weight gain
+

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