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From chen...@apache.org
Subject svn commit: r1463641 [9/42] - in /ctakes/trunk: ctakes-assertion-res/ ctakes-assertion-res/.settings/ ctakes-assertion-res/src/ ctakes-assertion-res/src/main/ ctakes-assertion-res/src/main/resources/ ctakes-assertion-res/src/main/resources/org/ ctakes-...
Date Tue, 02 Apr 2013 17:44:41 GMT
Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/mayo/sdmed.mod
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/mayo/sdmed.mod?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/mayo/sdmed.mod (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/mayo/sdmed.mod Tue Apr  2 17:41:30 2013
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Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/sample_sd_included.mod
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/sample_sd_included.mod?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/sample_sd_included.mod (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/sample_sd_included.mod Tue Apr  2 17:41:30 2013
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Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/sdmed.mod
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/sdmed.mod?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/sdmed.mod (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/sdmed.mod Tue Apr  2 17:41:30 2013
@@ -0,0 +1,2447 @@
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Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/template.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/template.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/template.xml (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/template.xml Tue Apr  2 17:41:30 2013
@@ -0,0 +1,107 @@
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<root suffix=" ?[:]" case_insensitive="yes" lists="no" >
+    <report>
+ 	    <!-- RECORD INFO START -->
+            <record/>
+	    <admission_date/>
+	    <report_status/>
+            <discharge_date/>
+            <identification/>
+
+ 	    <!-- DIAGNOSES -->
+	    <admit_diagnosis/>
+            <principal_discharge_diagnosis/>
+	    <principal_diagnosis/>
+	    <principal_diagnoses/>
+	    <secondary_diagnosis/>
+	    <secondary_diagnoses/>
+	    <discharge_diagnosis/>
+	    <chief_complaint/>
+	    <other_medical_issues_considered_at_this_time/>
+
+ 	    <!-- ALLERGIES -->
+	    <allergies/>
+	    <allergy/>
+
+ 	    <!-- HISTORY (medical, social, family)-->
+	    <brief_history_of_physical_illness/>
+            <history_of_present_illness/>
+            <history_of_the_present_illness/>
+	    <past_medical_history/>
+	    <past_surgical_history/>
+	    <social_history/>
+	    <sh/>
+	    <family_history/>
+
+	    <!-- EXAMS -->
+            <review_of_systems/>
+            <physical_examination_on_admission/>
+	    <physical_examination/>
+	    <physical_exam/>
+	    <studies/>
+
+	    <!-- PROCEDURES/LABS -->
+            <hospital_course/>
+	    <operations_and_procedures/>
+            <laboratory_data/>
+            <laboratories/>
+
+	    <!-- OTHER -->
+	    <diet/>
+	    <all/>
+	    <pmh/> 
+	    <hpi/>
+
+
+	    <!-- MEDICATIONS -->
+	    <medications />
+            <rx_on_admit/>
+	    <home_meds/>
+	    <meds/>
+            <current_medications />
+	    <discharge_medications />
+	    <medications_on_discharge />
+	
+	    <!-- DISCHARGE -->
+	    <discharge_condition/>
+	    <disposition/>
+	    <discharge/>
+	    <advanced_directives/>
+	    <conditions_on_discharge/>
+	    <follow-up/>
+	    <followup/>
+	    <discharge_status/>
+
+	    <!-- RECORD INFO END -->
+  	    <additional_comments/>
+	    <cc/>
+	    <to-do_list/>
+	    <for_pcp/>
+	    <dictated_by/>
+	    <attending/>
+	    <entered_by/>
+	    
+	    <!-- ODIE CORPUS -->
+	    <GROSS_DESCRIPTION/>
+	    <FINAL_DIAGNOSIS/>
+</report>
+</root>

Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/README
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/README?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/README (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/README Tue Apr  2 17:41:30 2013
@@ -0,0 +1,31 @@
+Contents:
+- Verifying you can produce expected tokenization using included sample data  
+- Running the TokenizerAnnotator analysis engine
+	- SentencesAndTokensAggregate.xml
+	- SentencesAndTokensCPE.xml
+
+##########################################################################
+Verifying you can produce expected tokenization using included sample data
+Running the TokenizerAnnotator analysis engine  
+##########################################################################
+
+Launch the "Tokenizer annotator" run configuration.
+Open CPE SentencesAndTokensCPE.xml, which uses the analysis
+engines listed in SentencesAndTokensAggregate.xml.
+
+The aggregate analysis engine is defined to read from plain text file(s) in 
+data\test\sample_notes_plaintext
+using the FilesInDirectoryCollectionReader.
+
+Since the sentence annotator processes the text one section at a time, there 
+must be at least one section (segment) annotation for the SentenceDetectorAnnotator
+to add Sentence annotations. 
+Therefore the first analysis engine is the SimpleSegmentAnnotator, which
+creates a single Segment annotation that covers the entire text.
+Then the SentenceDetectorAnnotator analysis engine adds Sentence annotations.
+Then the TokenizerAnnotator analysis engine adds annotations for
+tokens, such as PunctuationToken, WordToken, NewlineToken.
+
+Strictly speaking, it would not be necessary to run the
+SentenceDetectorAnnotator in order to test the TokenizerAnnotator.
+The TokenizerAnnotator does not require the presence of Sentence annotations.

Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/hyphenated.README.mayo
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/hyphenated.README.mayo?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/hyphenated.README.mayo (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/tokenizer/hyphenated.README.mayo Tue Apr  2 17:41:30 2013
@@ -0,0 +1,8 @@
+
+removed all names and numbers that appeared to be identifiers
+
+removed all lines that contained a hyphen as first character
+removed all lines that contained a hyphen as the last character of the "word"
+removed all lines that contained more than one consecutive hyphen
+
+1/2009: lowercased it
\ No newline at end of file



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