Return-Path: X-Original-To: apmail-incubator-ctakes-commits-archive@minotaur.apache.org Delivered-To: apmail-incubator-ctakes-commits-archive@minotaur.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id C53DDE3EC for ; Fri, 8 Mar 2013 09:18:30 +0000 (UTC) Received: (qmail 59187 invoked by uid 500); 8 Mar 2013 09:18:30 -0000 Delivered-To: apmail-incubator-ctakes-commits-archive@incubator.apache.org Received: (qmail 59111 invoked by uid 500); 8 Mar 2013 09:18:28 -0000 Mailing-List: contact ctakes-commits-help@incubator.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: ctakes-dev@incubator.apache.org Delivered-To: mailing list ctakes-commits@incubator.apache.org Received: (qmail 59074 invoked by uid 99); 8 Mar 2013 09:18:27 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Fri, 08 Mar 2013 09:18:27 +0000 X-ASF-Spam-Status: No, hits=-2000.0 required=5.0 tests=ALL_TRUSTED X-Spam-Check-By: apache.org Received: from [140.211.11.4] (HELO eris.apache.org) (140.211.11.4) by apache.org (qpsmtpd/0.29) with ESMTP; Fri, 08 Mar 2013 09:18:25 +0000 Received: from eris.apache.org (localhost [127.0.0.1]) by eris.apache.org (Postfix) with ESMTP id 88AFD238889B; Fri, 8 Mar 2013 09:18:06 +0000 (UTC) Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Subject: svn commit: r1454297 - in /incubator/ctakes/trunk: ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader.java ctakes-type-system/src/main/java/org/apache/ctakes/typesystem/type/constants/CONST.java Date: Fri, 08 Mar 2013 09:18:06 -0000 To: ctakes-commits@incubator.apache.org From: stevenbethard@apache.org X-Mailer: svnmailer-1.0.8-patched Message-Id: <20130308091806.88AFD238889B@eris.apache.org> X-Virus-Checked: Checked by ClamAV on apache.org Author: stevenbethard Date: Fri Mar 8 09:18:05 2013 New Revision: 1454297 URL: http://svn.apache.org/r1454297 Log: Adds missing named entity types to CONST Modified: incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader.java incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/apache/ctakes/typesystem/type/constants/CONST.java Modified: incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader.java URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader.java?rev=1454297&r1=1454296&r2=1454297&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader.java (original) +++ incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader.java Fri Mar 8 09:18:05 2013 @@ -323,7 +323,7 @@ public class SHARPKnowtatorXMLReader ext annotation, mention, jCas, - CONST.NE_TYPE_ID_UNKNOWN /* TODO: is this the correct type? */, + CONST.NE_TYPE_ID_CLINICAL_ATTRIBUTE, stringSlots, booleanSlots, annotationSlots, @@ -336,7 +336,7 @@ public class SHARPKnowtatorXMLReader ext annotation, mention, jCas, - CONST.NE_TYPE_ID_UNKNOWN /* TODO: is this the correct type? */, + CONST.NE_TYPE_ID_DEVICE, stringSlots, booleanSlots, annotationSlots, @@ -408,7 +408,7 @@ public class SHARPKnowtatorXMLReader ext annotation, mention, jCas, - CONST.NE_TYPE_ID_UNKNOWN /* TODO: is this the correct type? */, + CONST.NE_TYPE_ID_LAB, stringSlots, booleanSlots, annotationSlots, @@ -468,7 +468,7 @@ public class SHARPKnowtatorXMLReader ext annotation, mention, jCas, - CONST.NE_TYPE_ID_UNKNOWN /* TODO: is this the correct type? */, + CONST.NE_TYPE_ID_PHENOMENA, stringSlots, booleanSlots, annotationSlots, @@ -867,7 +867,6 @@ public class SHARPKnowtatorXMLReader ext } else if ("reference_range".equals(annotation.type)) { LabReferenceRangeModifier modifier = new LabReferenceRangeModifier(jCas, coveringSpan.begin, coveringSpan.end); LabReferenceRange attribute = new LabReferenceRange(jCas); - // TODO: is this where the reference range value should be taken from? attribute.setValue(modifier.getCoveredText()); attribute.addToIndexes(); modifier.setNormalizedForm(attribute); Modified: incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/apache/ctakes/typesystem/type/constants/CONST.java URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/apache/ctakes/typesystem/type/constants/CONST.java?rev=1454297&r1=1454296&r2=1454297&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/apache/ctakes/typesystem/type/constants/CONST.java (original) +++ incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/apache/ctakes/typesystem/type/constants/CONST.java Fri Mar 8 09:18:05 2013 @@ -30,6 +30,10 @@ public class CONST { public static final int NE_TYPE_ID_FINDING = 3; public static final int NE_TYPE_ID_PROCEDURE = 5; public static final int NE_TYPE_ID_ANATOMICAL_SITE = 6; + public static final int NE_TYPE_ID_CLINICAL_ATTRIBUTE = 7; + public static final int NE_TYPE_ID_DEVICE = 8; + public static final int NE_TYPE_ID_LAB = 9; + public static final int NE_TYPE_ID_PHENOMENA = 10; public static final int MODIFIER_TYPE_ID_UNKNOWN = 0; public static final int MODIFIER_TYPE_ID_COURSE_CLASS = 1;