ctakes-commits mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From build...@apache.org
Subject svn commit: r856488 [1/2] - in /websites/staging/ctakes/trunk: cgi-bin/ content/ content/css/ content/ctakes/ content/ctakes/css/ content/ctakes/docs/ content/ctakes/images/ content/images/
Date Fri, 29 Mar 2013 13:20:31 GMT
Author: buildbot
Date: Fri Mar 29 13:20:30 2013
New Revision: 856488

Log:
Staging update by buildbot for ctakes

Added:
    websites/staging/ctakes/trunk/content/community-faqs.html
    websites/staging/ctakes/trunk/content/components.html
    websites/staging/ctakes/trunk/content/css/
    websites/staging/ctakes/trunk/content/css/ctakes.css
    websites/staging/ctakes/trunk/content/ctakes-release-guide.html
    websites/staging/ctakes/trunk/content/developer-faqs.html
    websites/staging/ctakes/trunk/content/developerguide.html
    websites/staging/ctakes/trunk/content/downloads.cgi
    websites/staging/ctakes/trunk/content/downloads.html
    websites/staging/ctakes/trunk/content/get-involved.html
    websites/staging/ctakes/trunk/content/gettingstarted.html
    websites/staging/ctakes/trunk/content/glossary.html
    websites/staging/ctakes/trunk/content/history.html
    websites/staging/ctakes/trunk/content/images/
    websites/staging/ctakes/trunk/content/images/cTAKES-Type-System-1.jpg   (with props)
    websites/staging/ctakes/trunk/content/images/cTAKES-Type-System-2.jpg   (with props)
    websites/staging/ctakes/trunk/content/images/cTAKES-Type-System-3.jpg   (with props)
    websites/staging/ctakes/trunk/content/images/ctakes-2.6-dependencies.jpg   (with props)
    websites/staging/ctakes/trunk/content/images/ctakes-2.6-dependencies.jpg    (with props)
    websites/staging/ctakes/trunk/content/images/ctakes_logo.jpg   (with props)
    websites/staging/ctakes/trunk/content/index.html
    websites/staging/ctakes/trunk/content/license.html
    websites/staging/ctakes/trunk/content/mailing-lists.html
    websites/staging/ctakes/trunk/content/people.html
    websites/staging/ctakes/trunk/content/ppmc-faqs.html
    websites/staging/ctakes/trunk/content/roadmap.html
    websites/staging/ctakes/trunk/content/sitemap.html
    websites/staging/ctakes/trunk/content/user-faqs.html
    websites/staging/ctakes/trunk/content/userguide.html
Removed:
    websites/staging/ctakes/trunk/content/ctakes/community-faqs.html
    websites/staging/ctakes/trunk/content/ctakes/components.html
    websites/staging/ctakes/trunk/content/ctakes/css/
    websites/staging/ctakes/trunk/content/ctakes/ctakes-release-guide.html
    websites/staging/ctakes/trunk/content/ctakes/developer-faqs.html
    websites/staging/ctakes/trunk/content/ctakes/developerguide.html
    websites/staging/ctakes/trunk/content/ctakes/docs/
    websites/staging/ctakes/trunk/content/ctakes/downloads.cgi
    websites/staging/ctakes/trunk/content/ctakes/downloads.html
    websites/staging/ctakes/trunk/content/ctakes/get-involved.html
    websites/staging/ctakes/trunk/content/ctakes/gettingstarted.html
    websites/staging/ctakes/trunk/content/ctakes/glossary.html
    websites/staging/ctakes/trunk/content/ctakes/history.html
    websites/staging/ctakes/trunk/content/ctakes/images/
    websites/staging/ctakes/trunk/content/ctakes/index.html
    websites/staging/ctakes/trunk/content/ctakes/license.html
    websites/staging/ctakes/trunk/content/ctakes/mailing-lists.html
    websites/staging/ctakes/trunk/content/ctakes/people.html
    websites/staging/ctakes/trunk/content/ctakes/ppmc-faqs.html
    websites/staging/ctakes/trunk/content/ctakes/roadmap.html
    websites/staging/ctakes/trunk/content/ctakes/sitemap.html
    websites/staging/ctakes/trunk/content/ctakes/user-faqs.html
    websites/staging/ctakes/trunk/content/ctakes/userguide.html
Modified:
    websites/staging/ctakes/trunk/cgi-bin/   (props changed)
    websites/staging/ctakes/trunk/content/   (props changed)

Propchange: websites/staging/ctakes/trunk/cgi-bin/
------------------------------------------------------------------------------
--- cms:source-revision (original)
+++ cms:source-revision Fri Mar 29 13:20:30 2013
@@ -1 +1 @@
-1459477
+1462465

Propchange: websites/staging/ctakes/trunk/content/
------------------------------------------------------------------------------
--- cms:source-revision (original)
+++ cms:source-revision Fri Mar 29 13:20:30 2013
@@ -1 +1 @@
-1459477
+1462465

Added: websites/staging/ctakes/trunk/content/community-faqs.html
==============================================================================
--- websites/staging/ctakes/trunk/content/community-faqs.html (added)
+++ websites/staging/ctakes/trunk/content/community-faqs.html Fri Mar 29 13:20:30 2013
@@ -0,0 +1,118 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<html>
+<head>
+<!--
+ 
+    Licensed to the Apache Software Foundation (ASF) under one or more
+    contributor license agreements.  See the NOTICE file distributed with
+    this work for additional information regarding copyright ownership.
+    The ASF licenses this file to You under the Apache License, Version 2.0
+    (the "License"); you may not use this file except in compliance with
+    the License.  You may obtain a copy of the License at
+ 
+       http://www.apache.org/licenses/LICENSE- 2.0
+ 
+    Unless required by applicable law or agreed to in writing, software
+    distributed under the License is distributed on an "AS IS" BASIS,
+    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+    See the License for the specific language governing permissions and
+    limitations under the License.
+-->
+
+<link href="/ctakes/css/ctakes.css" rel="stylesheet" type="text/css">
+
+<title>Apache cTAKES - Community FAQs</title>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+
+</head>
+ 
+<body>
+ <div class="banner">
+      <div id="bannerleft">
+		<a href="http://www.apache.org/"><img src="http://www.apache.org/images/asf_logo_wide.gif" alt="The Apache Software Foundation" border="0"/></a>
+	<br/>
+			<img alt="cTAKES logo" src="/ctakes/images/ctakes_logo.jpg" border="0"/>
+      </div>  
+    <div id="bannerright">	
+	      <img id="asf-logo" alt="Apache Incubator" src="http://incubator.apache.org/images/egg-logo.png" border="0"/></a>			
+	  </div>
+ </div>  
+  <div id="clear"></div>
+
+
+  <div id="sidenav">
+    <h1 id="general">General</h1>
+<ul>
+<li><a href="/ctakes/index.html">About</a></li>
+<li><a href="/ctakes/gettingstarted.html">Getting Started</a></li>
+<li><a href="/ctakes/downloads.cgi">Downloads</a></li>
+<li><a href="/ctakes/glossary.html">Glossary</a></li>
+<li><a href="/ctakes/roadmap.html">Archives</a></li>
+</ul>
+<h1 id="community">Community</h1>
+<ul>
+<li><a href="/ctakes/get-involved.html">Get Involved</a></li>
+<li><a href="https://issues.apache.org/jira/browse/ctakes">Bug Tracker</a></li>
+<li><a href="/ctakes/mailing-lists.html">Mailing Lists</a></li>
+<li><a href="/ctakes/people.html">People</a></li>
+<li><a href="http://incubator.apache.org/projects/ctakes.html">Incubator page</a></li>
+<li><a href="/ctakes/license.html">License</a></li>
+<li><a href="/ctakes/history.html">History</a></li>
+<li><a href="/ctakes/community-faqs.html">Community FAQs</a></li>
+</ul>
+<h1 id="users">Users</h1>
+<ul>
+<li><a href="/ctakes/userguide.html">User Guide</a></li>
+<li><a href="/ctakes/user-faqs.html">User FAQs</a></li>
+</ul>
+<h1 id="developers">Developers</h1>
+<ul>
+<li><a href="/ctakes/developerguide.html">Developer Guide</a></li>
+<li><a href="/ctakes/developer-faqs.html">Developer FAQs</a></li>
+</ul>
+<h1 id="ppmc">PPMC</h1>
+<ul>
+<li><a href="/ctakes/ppmc-faqs.html">PPMC FAQs</a></li>
+<li><a href="/ctakes/ctakes-release-guide.html">Release Guide</a> <br />
+</li>
+</ul>
+<h1 id="asf">ASF</h1>
+<ul>
+<li><a href="http://www.apache.org">Apache Software Foundation</a></li>
+<li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+<li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+</ul>
+  </div>
+  <div id="contenta">
+    <div class="toc">
+<ul>
+<li><a href="#how-do-i-talk-to-someone-on-the-project-without-having-to-signup-for-anything">How do I talk to someone on the project without having to signup for anything?</a></li>
+<li><a href="#things-seem-to-be-scattered-to-multiple-sites-is-there-one-place-for-everything">Things seem to be scattered to multiple sites. Is there one place for everything?</a></li>
+</ul>
+</div>
+<h3 id="how-do-i-talk-to-someone-on-the-project-without-having-to-signup-for-anything">How do I talk to someone on the project without having to signup for anything?</h3>
+<p>There is no one person who listens to questions. You will need to at least subscribe to the <a href="http://incubator.apache.org/ctakes/mailing-lists.html#users-mailing-list">user mailing list</a>. You can unsubscribe just as easy.</p>
+<h3 id="things-seem-to-be-scattered-to-multiple-sites-is-there-one-place-for-everything">Things seem to be scattered to multiple sites. Is there one place for everything?</h3>
+<p>Yes and no, there are several sites that make up all Apache projects. Each serve a specific purpose. The first one listed below is the one place that will point to everything else as needed.</p>
+<ul>
+<li>The Apache cTAKES incubator <strong>main site</strong> (this site): <a href="http://incubator.apache.org/ctakes/">http://incubator.apache.org/ctakes/</a> is the central location that will point to everything you will need.</li>
+<li>The Apache cTAKES incubator <strong>metadata site</strong>: <a href="http://incubator.apache.org/projects/ctakes.html">http://incubator.apache.org/projects/ctakes.html</a> is an administrative site for the Apache Software Foundation who manage many projects.</li>
+<li>The Apache cTAKES <strong>documentation</strong>: <a href="https://cwiki.apache.org/confluence/display/CTAKES">https://cwiki.apache.org/confluence/display/CTAKES</a> houses the bulk of the how-to information.</li>
+<li>The Apache cTAKES <strong>source code repository</strong>: <a href="http://svn.apache.org/viewvc/incubator/ctakes/">http://svn.apache.org/viewvc/incubator/ctakes/</a> holds all the code for cTAKES and the incubator main site.</li>
+<li>The <strong>resources</strong> required by cTAKES (not an Apache deliverable): <a href="http://sourceforge.net/projects/ctakesresources">http://sourceforge.net/projects/ctakesresources</a> holds compressed sets of resource files for various Apache cTAKES versions.</li>
+<li>The Apache cTAKES binary <strong>distribution system</strong>: <a href="http://www.apache.org/dist/incubator/ctakes/">http://www.apache.org/dist/incubator/ctakes/</a> allows a download location for any cTAKES deliverables.</li>
+<li>The Apache cTAKES bug tracker: <a href="https://issues.apache.org/jira/browse/ctakes">https://issues.apache.org/jira/browse/ctakes</a> is a JIRA system to manage issues across releases.</li>
+<li>The Apache cTAKES <strong>email communication archives</strong>: <a href="http://mail-archives.apache.org/mod_mbox/#incubator">http://mail-archives.apache.org/mod_mbox/#incubator</a> finding cTAKES in this list allows one to search through past email communications.</li>
+<li>All cTAKES releases <strong>prior to becoming an Apache project</strong>: <a href="https://wiki.nci.nih.gov/x/fALrAw">https://wiki.nci.nih.gov/x/fALrAw</a> allows a historical look at how cTAKES matured.</li>
+</ul>
+  </div>
+ 
+ <div id="footera">
+    <div id="copyrighta">
+      <p>Copyright &#169; 2011 The Apache Software Foundation, Licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.<br/>Apache and the Apache feather logo are trademarks of The Apache Software Foundation.</p>
+    </div>
+ </div>
+ 
+</body>
+</html>
+

Added: websites/staging/ctakes/trunk/content/components.html
==============================================================================
--- websites/staging/ctakes/trunk/content/components.html (added)
+++ websites/staging/ctakes/trunk/content/components.html Fri Mar 29 13:20:30 2013
@@ -0,0 +1,140 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<html>
+<head>
+<!--
+ 
+    Licensed to the Apache Software Foundation (ASF) under one or more
+    contributor license agreements.  See the NOTICE file distributed with
+    this work for additional information regarding copyright ownership.
+    The ASF licenses this file to You under the Apache License, Version 2.0
+    (the "License"); you may not use this file except in compliance with
+    the License.  You may obtain a copy of the License at
+ 
+       http://www.apache.org/licenses/LICENSE- 2.0
+ 
+    Unless required by applicable law or agreed to in writing, software
+    distributed under the License is distributed on an "AS IS" BASIS,
+    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+    See the License for the specific language governing permissions and
+    limitations under the License.
+-->
+
+<link href="/ctakes/css/ctakes.css" rel="stylesheet" type="text/css">
+
+<title>Apache cTAKES components</title>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+
+</head>
+ 
+<body>
+ <div class="banner">
+      <div id="bannerleft">
+		<a href="http://www.apache.org/"><img src="http://www.apache.org/images/asf_logo_wide.gif" alt="The Apache Software Foundation" border="0"/></a>
+	<br/>
+			<img alt="cTAKES logo" src="/ctakes/images/ctakes_logo.jpg" border="0"/>
+      </div>  
+    <div id="bannerright">	
+	      <img id="asf-logo" alt="Apache Incubator" src="http://incubator.apache.org/images/egg-logo.png" border="0"/></a>			
+	  </div>
+ </div>  
+  <div id="clear"></div>
+
+
+  <div id="sidenav">
+    <h1 id="general">General</h1>
+<ul>
+<li><a href="/ctakes/index.html">About</a></li>
+<li><a href="/ctakes/gettingstarted.html">Getting Started</a></li>
+<li><a href="/ctakes/downloads.cgi">Downloads</a></li>
+<li><a href="/ctakes/glossary.html">Glossary</a></li>
+<li><a href="/ctakes/roadmap.html">Archives</a></li>
+</ul>
+<h1 id="community">Community</h1>
+<ul>
+<li><a href="/ctakes/get-involved.html">Get Involved</a></li>
+<li><a href="https://issues.apache.org/jira/browse/ctakes">Bug Tracker</a></li>
+<li><a href="/ctakes/mailing-lists.html">Mailing Lists</a></li>
+<li><a href="/ctakes/people.html">People</a></li>
+<li><a href="http://incubator.apache.org/projects/ctakes.html">Incubator page</a></li>
+<li><a href="/ctakes/license.html">License</a></li>
+<li><a href="/ctakes/history.html">History</a></li>
+<li><a href="/ctakes/community-faqs.html">Community FAQs</a></li>
+</ul>
+<h1 id="users">Users</h1>
+<ul>
+<li><a href="/ctakes/userguide.html">User Guide</a></li>
+<li><a href="/ctakes/user-faqs.html">User FAQs</a></li>
+</ul>
+<h1 id="developers">Developers</h1>
+<ul>
+<li><a href="/ctakes/developerguide.html">Developer Guide</a></li>
+<li><a href="/ctakes/developer-faqs.html">Developer FAQs</a></li>
+</ul>
+<h1 id="ppmc">PPMC</h1>
+<ul>
+<li><a href="/ctakes/ppmc-faqs.html">PPMC FAQs</a></li>
+<li><a href="/ctakes/ctakes-release-guide.html">Release Guide</a> <br />
+</li>
+</ul>
+<h1 id="asf">ASF</h1>
+<ul>
+<li><a href="http://www.apache.org">Apache Software Foundation</a></li>
+<li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+<li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+</ul>
+  </div>
+  <div id="contenta">
+    <h1 id="apache-ctakes-components">Apache cTAKES Components</h1>
+<h3 id="sentence-boundary-detection">Sentence boundary detection</h3>
+<p>Apache OpenNLP technology with a model trained on manually annotated clinical data
+(see Savova et al, 2010)</p>
+<h3 id="tokenization">Tokenization</h3>
+<p>Rule-based (see Savova et al, 2010)</p>
+<h3 id="morphologic-normalization-national-library-of-medicines-lexical-variant-generation-tool">Morphologic normalization (National Library of Medicine's Lexical Variant Generation tool)</h3>
+<p><a href="http://www.nlm.nih.gov/research/umls/new_users/online_learning/LEX_004.htm">http://www.nlm.nih.gov/research/umls/new_users/online_learning/LEX_004.htm</a></p>
+<h3 id="pos-tagging">POS tagging</h3>
+<p>Apache OpenNLP technology with a model trained on manually annotated clinical data
+(see Savova et al, 2010; upcoming 2013 publication)</p>
+<h3 id="shallow-parsing">Shallow parsing</h3>
+<p>Apache OpenNLP technology with a model trained on manually annotated clinical data
+(see Savova et al, 2010)</p>
+<h3 id="named-entity-recognition-see-savova-et-al-2010">Named Entity Recognition (see Savova et al, 2010)</h3>
+<ul>
+<li>Dictionary mapping (lookup algorithm)</li>
+<li>Semantic typing is based on these UMLS semantic types: diseases/disorders, signs/symptoms, anatomical sites, procedures, medications</li>
+</ul>
+<h3 id="assertion-module">Assertion module</h3>
+<p>Discovers negation, degree of certainty and the subject/experiencer of the clinical event (upcoming 2013 publication)</p>
+<h3 id="dependency-parser">Dependency parser</h3>
+<p>Detects dependency relations between words (machine learning with a model trained on manually annotated clinical data) (see Choi and Palmer, 2011a; Choi and Palmer, 2011b; upcoming 2013 publication)</p>
+<h3 id="constituency-parser">Constituency parser</h3>
+<p>Apache OpenNLP technology with a model trained on manually annotated clinical data (see Zheng et al, 2011)</p>
+<h3 id="semantic-role-labeler">Semantic Role Labeler</h3>
+<p>Assigns the predicate-argument structure of the sentence (who did what to whom when and where) (see Choi and Palmer, 2011a; Choi and Palmer, 2011b; upcoming 2013 publication)</p>
+<h3 id="co-reference-resolver">Co-reference resolver</h3>
+<p>Resolves co-referring entities. (machine learning with a model trained on manually annotated clinical data) (see Zheng et al, 2011)</p>
+<h3 id="relation-extractor">Relation extractor</h3>
+<p>Discovers attributes such as the location and the severity of a clinical condition (machine learning with a model trained on manually annotated clinical data) (upcoming 2013 publication)</p>
+<h3 id="drug-profile-module">Drug Profile module</h3>
+<p>Discovers drug-specific attributes such as dosage, duration, form, frequency, route, strength (see Sohn et al, 2010; Savova et al, 2011)</p>
+<h3 id="smoking-status-classifier">Smoking status classifier</h3>
+<p>Classifies document/patient as past smoker, current smoker, non-smoker, smoker, unknown (see Savova et al, 2008)</p>
+<h1 id="select-publications">Select Publications:</h1>
+<p>Choi J, Palmer M. Getting the most out of Transition-based Dependency Parsing. 46th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies,. Portland, OR.: ACL-HLT 2011a , 2011.</p>
+<p>Choi J, Palmer M. Transition-based Semantic Role Labeling Using Predicate Argument Clustering. RELMS 2011: Relational Models of Semantics, held in conjunction with ACL-HLT 2011. Portland, OR, 2011b.</p>
+<p>Savova G, Olson J, Murphy S, Cafourek V, Couch F, Goetz M, Ingle J, Suman V, Chute C and Weinshilboum R. 2011. The electronic medical record and drug response research: automated discovery of drug treatment patterns for endocrine therapy of breast cancer. Journal of American Medical Informatics Association.</p>
+<p>Savova GK, Masanz JJ, Ogren PV, Zheng J, Sohn S, Kipper-Schuler KC, and Chute CG. Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. Journal of the American Medical Informatics Association : JAMIA 2010;17(5):507-13.</p>
+<p>Savova G, Ogren P, Duffy P, Buntrock J and Chute C. 2008. Mayo Clinic System for patient smoking status classification. J Am Med Inform Assoc. 2008; 15(1):25-8. PMID: 17947622</p>
+<p>Sohn S, Murphy SP, Masanz JJ, Kocher JP, Savova GK. Classification of medication status change in clinical narratives. AMIA Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2010;2010:762-6.</p>
+<p>Zheng J, Chapman W, Miller T, Lin C, Crowley R and Savova G. 2012. A system for coreference resolution for the clinical narrative. Journal of the American Medical Informatics Association. doi:10.1136/amiajnl-2011-000599</p>
+  </div>
+ 
+ <div id="footera">
+    <div id="copyrighta">
+      <p>Copyright &#169; 2011 The Apache Software Foundation, Licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.<br/>Apache and the Apache feather logo are trademarks of The Apache Software Foundation.</p>
+    </div>
+ </div>
+ 
+</body>
+</html>
+

Added: websites/staging/ctakes/trunk/content/css/ctakes.css
==============================================================================
--- websites/staging/ctakes/trunk/content/css/ctakes.css (added)
+++ websites/staging/ctakes/trunk/content/css/ctakes.css Fri Mar 29 13:20:30 2013
@@ -0,0 +1,322 @@
+body {
+    color: white;
+    font-family: Helvetica,Arial,'Liberation Sans',FreeSans,sans-serif;
+    font-size: 11pt;
+    margin: 0;
+}
+#banner {
+    color: black;
+    font-family: Helvetica,Arial,'Liberation Sans',FreeSans,sans-serif;
+    font-size: 16pt;
+    height: 150px;
+    padding: 0;
+    vertical-align: middle;
+}
+#bannerright {
+    float: right;
+    padding: 34pt 36pt 26pt;
+    text-align: right;
+}
+#bannercenter {
+    color: #107EC0;
+    padding: 46pt 2pt 50pt;
+}
+#bannerleft {
+    float: left;
+    text-align: left;
+}
+#bannerleft a:hover {
+    background-color: white;
+    color: #107EC0;
+}
+pre {
+    width: 99%;
+    overflow: auto;
+    border: 1px dashed #aaa;
+    padding: 0.1em 0.5em 0.3em 0.7em;
+    margin: 0.3em;
+}
+
+code {
+    background: none repeat scroll 0 0 #F8F8F8;
+    margin: 0.5em;
+}
+a {
+    color: #107EC0;
+}
+a:visited {
+    color: #107EC0;
+}
+a:hover {
+    color: #107EC0;
+    text-decoration: underline;
+}
+a img {
+    border: medium none;
+}
+h1, h2, h3, h4, h5, h6 {
+    color: #193240;
+}
+#clear {
+    clear: both;
+    overflow: auto;
+}
+#content {
+    clear: both;
+    color: #333333;
+    margin: 0 50px 20px;
+    overflow: auto;
+    padding: 0 8px 40px;
+}
+#content h1, h2, h3, h4, h5, h6 {
+    font-weight: normal;
+    margin: 10px 0 15px;
+    padding: 5px 0;
+    text-transform: none;
+}
+#content h1 {
+    border-top: 1px solid #A3AFB6;
+    font-size: 1.4em;
+    padding: 15px;
+}
+#content h2 {
+    font-size: 1.2em;
+    margin-top: 2em;
+}
+#content h3, h4, h5, h6 {
+    border-bottom: medium none;
+    font-size: 1em;
+    margin-bottom: 0;
+}
+#content li {
+    margin-bottom: 0.5em;
+}
+#contenta {
+    color: #333333;
+    margin: 0 50px 20px 250px;
+    padding: 0 8px 40px;
+}
+#contenta h1, h2, h3, h4, h5, h6 {
+    font-weight: bold;
+    margin: 10px 0 15px;
+    padding: 5px 0;
+}
+#contenta h1 {
+    border-bottom: 2px solid #A3AFB6;
+    font-size: 1.4em;
+    padding: 15px;
+}
+#contenta h2 {
+    border-bottom: 1px solid #A3AFB6;
+    font-size: 1.2em;
+    margin-top: 2em;
+}
+#contenta h3 {
+    border-bottom: medium none;
+    font-size: 1.1em;
+    margin-top: 2em;
+}
+#contenta h4 {
+    border-bottom: medium none;
+    font-size: .9em;
+    margin-top: 1em;
+}
+#contenta h5 {
+    border-bottom: medium none;
+    font-size: .9em;
+    margin-top: 1em;
+    font-style: italic;
+}
+#contenta h6 {
+    border-bottom: medium none;
+    font-size: .7em;
+    margin-bottom: 0;
+}
+#contenta li {
+    margin-bottom: 0.5em;
+}
+#contenta a:hover {
+    background-color: #E6EBED;
+    color: #107EC0;
+    text-decoration: underline;
+}
+table {
+    border-collapse: collapse;
+    margin-left: 0;
+}
+th {
+    background: none repeat scroll 0 0 #F5F8FA;
+    border: 1px solid #A3AFB6;
+    font-size: 0.9em;
+    height: 40px;
+    vertical-align: middle;
+}
+td {
+    border: 1px solid #A3AFB6;
+    font-size: 0.9em;
+    padding: 0.4em 0.5em;
+    vertical-align: top;
+}
+.w140 {
+    width: 140px;
+}
+.w160 {
+    width: 160px;
+}
+.w180 {
+    width: 180px;
+}
+.w200 {
+    width: 200px;
+}
+.w220 {
+    width: 220px;
+}
+.codehilite {
+    background-color: #FFFF99;
+    border-radius: 10px 10px 10px 10px;
+    padding: 0.01em 1em;
+}
+#sidenav {
+    -moz-border-bottom-colors: none;
+    -moz-border-left-colors: none;
+    -moz-border-right-colors: none;
+    -moz-border-top-colors: none;
+    background: none repeat scroll 0 0 #F5F8FA;
+    border-color: #E6EBED #E6EBED #E6EBED -moz-use-text-color;
+    border-image: none;
+    border-radius: 0 10px 10px 0;
+    border-style: solid solid solid none;
+    border-width: 1px 1px 1px medium;
+    color: #000033;
+    float: left;
+    font-size: 0.9em;
+    margin: 0 0 20px;
+    padding: 15px 15px 5px 25px;
+    width: 180px;
+}
+#sidenav img {
+    display: block;
+    margin-left: auto;
+    margin-right: auto;
+    padding-bottom: 15px;
+}
+#sidenav h1 {
+    border-bottom: 1px solid #A3AFB6;
+    color: #000000;
+    font-size: 1em;
+    margin-bottom: 0;
+    margin-top: 0.8em;
+    padding: 0;
+}
+#sidenav ul {
+    list-style: none outside none;
+    margin: 0;
+    padding: 0;
+}
+#sidenav li {
+    border-bottom: 1px solid #E6EBED;
+    margin: 0.2em 0;
+    padding: 0;
+}
+#sidenav li a {
+    margin: 0;
+    text-decoration: none;
+}
+#sidenav li a:hover {
+    background: none repeat scroll 0 0 transparent;
+    color: #193240;
+}
+#navigation {
+    -moz-border-bottom-colors: none;
+    -moz-border-left-colors: none;
+    -moz-border-right-colors: none;
+    -moz-border-top-colors: none;
+    background: none repeat scroll 0 0 #F5F8FA;
+    border-color: #E6EBED #E6EBED #E6EBED -moz-use-text-color;
+    border-image: none;
+    border-radius: 0 10px 10px 0;
+    border-style: solid solid solid none;
+    border-width: 1px 1px 1px medium;
+    color: #000033;
+    float: left;
+    font-size: 0.9em;
+    margin: 0 0 20px;
+    padding: 15px 15px 5px 25px;
+    width: 180px;
+}
+#navigation img {
+    display: block;
+    margin-left: auto;
+    margin-right: auto;
+    padding-bottom: 15px;
+}
+#navigation h1 {
+    border-bottom: 1px solid #A3AFB6;
+    color: #000000;
+    font-size: 1em;
+    margin-bottom: 0;
+    margin-top: 0.8em;
+    padding: 0;
+}
+#navigation ul {
+    list-style: none outside none;
+    margin: 0;
+    padding: 0;
+}
+#navigation li {
+    border-bottom: 1px solid #E6EBED;
+    margin: 0.2em 0;
+    padding: 0;
+}
+#navigation li a {
+    margin: 0;
+    text-decoration: none;
+}
+#navigation li a:hover {
+    background-color: #E6EBED;
+    color: #107EC0;
+}
+#footera {
+    border-top: 2px solid #CCCCCC;
+    clear: both;
+    color: #666666;
+    font-size: 8pt;
+    line-height: 10pt;
+    margin: 20px 0 0;
+    overflow: auto;
+    padding: 0 8px;
+    text-align: left;
+}
+#copyrighta {
+}
+#copyrighta p {
+    line-height: 10pt;
+    padding-bottom: 5px;
+    padding-left: 20px;
+}
+#copyrighta a {
+    color: #107EC0;
+    text-decoration: underline;
+}
+#copyrighta a:hover {
+    background-color: #E6EBED;
+}
+#poweredby {
+    float: right;
+    height: 100px;
+    text-align: right;
+    width: 210px;
+}
+#asf-logo {
+    padding-top: 20px;
+    width: 180px;
+}
+dd {
+}
+dl {
+}
+dt {
+    display: inline;
+    float: left;
+}

Added: websites/staging/ctakes/trunk/content/ctakes-release-guide.html
==============================================================================
--- websites/staging/ctakes/trunk/content/ctakes-release-guide.html (added)
+++ websites/staging/ctakes/trunk/content/ctakes-release-guide.html Fri Mar 29 13:20:30 2013
@@ -0,0 +1,176 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<html>
+<head>
+<!--
+ 
+    Licensed to the Apache Software Foundation (ASF) under one or more
+    contributor license agreements.  See the NOTICE file distributed with
+    this work for additional information regarding copyright ownership.
+    The ASF licenses this file to You under the Apache License, Version 2.0
+    (the "License"); you may not use this file except in compliance with
+    the License.  You may obtain a copy of the License at
+ 
+       http://www.apache.org/licenses/LICENSE- 2.0
+ 
+    Unless required by applicable law or agreed to in writing, software
+    distributed under the License is distributed on an "AS IS" BASIS,
+    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+    See the License for the specific language governing permissions and
+    limitations under the License.
+-->
+
+<link href="/ctakes/css/ctakes.css" rel="stylesheet" type="text/css">
+
+<title>Apache cTAKES - Preparing a release</title>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+
+</head>
+ 
+<body>
+ <div class="banner">
+      <div id="bannerleft">
+		<a href="http://www.apache.org/"><img src="http://www.apache.org/images/asf_logo_wide.gif" alt="The Apache Software Foundation" border="0"/></a>
+	<br/>
+			<img alt="cTAKES logo" src="/ctakes/images/ctakes_logo.jpg" border="0"/>
+      </div>  
+    <div id="bannerright">	
+	      <img id="asf-logo" alt="Apache Incubator" src="http://incubator.apache.org/images/egg-logo.png" border="0"/></a>			
+	  </div>
+ </div>  
+  <div id="clear"></div>
+
+
+  <div id="sidenav">
+    <h1 id="general">General</h1>
+<ul>
+<li><a href="/ctakes/index.html">About</a></li>
+<li><a href="/ctakes/gettingstarted.html">Getting Started</a></li>
+<li><a href="/ctakes/downloads.cgi">Downloads</a></li>
+<li><a href="/ctakes/glossary.html">Glossary</a></li>
+<li><a href="/ctakes/roadmap.html">Archives</a></li>
+</ul>
+<h1 id="community">Community</h1>
+<ul>
+<li><a href="/ctakes/get-involved.html">Get Involved</a></li>
+<li><a href="https://issues.apache.org/jira/browse/ctakes">Bug Tracker</a></li>
+<li><a href="/ctakes/mailing-lists.html">Mailing Lists</a></li>
+<li><a href="/ctakes/people.html">People</a></li>
+<li><a href="http://incubator.apache.org/projects/ctakes.html">Incubator page</a></li>
+<li><a href="/ctakes/license.html">License</a></li>
+<li><a href="/ctakes/history.html">History</a></li>
+<li><a href="/ctakes/community-faqs.html">Community FAQs</a></li>
+</ul>
+<h1 id="users">Users</h1>
+<ul>
+<li><a href="/ctakes/userguide.html">User Guide</a></li>
+<li><a href="/ctakes/user-faqs.html">User FAQs</a></li>
+</ul>
+<h1 id="developers">Developers</h1>
+<ul>
+<li><a href="/ctakes/developerguide.html">Developer Guide</a></li>
+<li><a href="/ctakes/developer-faqs.html">Developer FAQs</a></li>
+</ul>
+<h1 id="ppmc">PPMC</h1>
+<ul>
+<li><a href="/ctakes/ppmc-faqs.html">PPMC FAQs</a></li>
+<li><a href="/ctakes/ctakes-release-guide.html">Release Guide</a> <br />
+</li>
+</ul>
+<h1 id="asf">ASF</h1>
+<ul>
+<li><a href="http://www.apache.org">Apache Software Foundation</a></li>
+<li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+<li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+</ul>
+  </div>
+  <div id="contenta">
+    <h2 id="how-does-ctakes-manage-releases">How does cTAKES manage releases?</h2>
+<p>We follow the standard ASF release process. 
+One of the committers would volunteer to play the release manager role for a given release. 
+A few days will be spent on stabilizing the cTAKES development trunk, improving its documentation and test coverage. 
+The maven release plug-in (mvn release:prepare/perform) is recommended for this purpose (See details below).</p>
+<p>Open JIRA issues will be reviewed and rearranged accordingly. Many of the issues will get resolved during this process and the remaining few will be accordingly prioritized and scheduled for a future release. The unit tests and integration tests will be used extensively during this critical period to keep the development in its most stable form.
+Move any existing open issues to the next release.</p>
+<ol>
+<li>Send an email out to ctakes-dev@ with the intention of creating a release and that you will be volunteering for the release manager role.</li>
+<li>Decide if you like to A) freeze any development in trunk until the release has been completed. B) Create a branch that this release will be created from and development in trunk could continue.</li>
+<li>If B) create a branch from trunk (such svn copy from trunk to branches/3.0.0-incubating).  Edit the SVN connections info in the root pom.xml to the branch instead of trunk.  Continue with the steps below as usual, but just work of the newly created branch instead of trunk.  Note: It is the RM role to ensure that any fixes done in the branch are also done back in trunk.</li>
+</ol>
+<p>Finally the release manager would trigger the release build, sign the generated artifacts and host them on Apache Nexus &amp; Maven Central. A release vote will be called urging all those interested to review the packs and provide feedback. Upon receiving the necessary number of votes, the artifacts will be uploaded to the appropriate servers for distribution.</p>
+<h3 id="preparing-your-environment">Preparing your Environment</h3>
+<ol>
+<li>Read: <a href="http://www.apache.org/dev/publishing-maven-artifacts.html">http://www.apache.org/dev/publishing-maven-artifacts.html</a></li>
+<li>Setup your PGP keys: <a href="https://docs.sonatype.org/display/Repository/How+To+Generate+PGP+Signatures+With+Maven">https://docs.sonatype.org/display/Repository/How+To+Generate+PGP+Signatures+With+Maven</a></li>
+</ol>
+<h3 id="preparing-a-release-using-maven">Preparing a Release using Maven</h3>
+<p>Note: Using 3.0.0-incubating as an example</p>
+<p>It may prompt your to enter your PGP passphrase and SVN password multiple times for each module.  Just enter them in- as passing them in thru the CLI is found to be insecure.</p>
+<ol>
+<li>$svn co https://svn.apache.org/repos/asf/incubator/ctakes/trunk ctakes</li>
+<li>$mvn release:clean</li>
+<li>$mvn release:prepare -DdryRun={false} -Dresume={false} -DautoVersionSubmodules=true</li>
+</ol>
+<p>Release: 3.0.0-incubating</p>
+<p>Tag: ctakes-3.0.0-incubating-rc1</p>
+<p>Next Dev Release: 3.1.0-incubating-SNAPSHOT</p>
+<ol>
+<li>$mvn release:perform</li>
+<li>[If need to revert] $ mvn release:rollback  (Works if you didn't do a release:clean yet)</li>
+</ol>
+<p>This will place the artifacts to the ASF Nexus area for staging for voting.</p>
+<h3 id="preparing-the-rc-for-a-vote">Preparing the RC for a VOTE</h3>
+<p>Send an email like the following with the subject line: [VOTE} Release Apache cTAKES <version> to ctakes-dev@
+<pre>
+Hi,
+This is a call for a vote on releasing the following candidate as Apache cTAKES 3.0.0-incubating. This will be our first release.</p>
+<p>CTAKES-136 - Remove models and binary from the src and bin dist</p>
+<p>For more detailed information on the changes/release notes, please visit:
+https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12313621&amp;version=12322969</p>
+<p>The release was made using the cTAKES release process documented here: http://incubator.apache.org/ctakes/ctakes-release-guide.html</p>
+<p>The candidate is available at:
+http://people.apache.org/~chenpei/ctakes-3.0.0-incubating/rc7/target/apache-ctakes-3.0.0-incubating-src.tar.gz /.zip</p>
+<p>The binary is:
+http://people.apache.org/~chenpei/ctakes-3.0.0-incubating/rc7/target/apache-ctakes-3.0.0-incubating-bin.tar.gz /.zip</p>
+<p>The tag to be voted on:
+http://svn.apache.org/repos/asf/incubator/ctakes/tags/ctakes-3.0.0-incubating-rc7/</p>
+<p>The MD5 checksum of the tarball can be found at:
+http://people.apache.org/~chenpei/ctakes-3.0.0-incubating/rc7/target/apache-ctakes-3.0.0-incubating-src.tar.gz.md5 /.zip.md5</p>
+<p>The signature of the tarball can be found at:
+http://people.apache.org/~chenpei/ctakes-3.0.0-incubating/rc7/target/apache-ctakes-3.0.0-incubating-src.tar.gz.asc /.zip.asc</p>
+<p>Apache cTAKES' KEYS file, containing the PGP keys used to sign the release:
+http://svn.apache.org/repos/asf/incubator/ctakes/tags/ctakes-3.0.0-incubating-rc7/KEYS</p>
+<p>Please vote on releasing these packages as Apache cTAKES 3.0.0-incubating. The vote is open for at least the next 72 hours.
+Only votes from Incubator PMC are binding, but folks are welcome to check the release candidate and voice their approval or disapproval. The vote passes if at least three binding +1 votes are cast.</p>
+<p>[ ] +1 Release the packages as Apache cTAKES 3.0.0-incubating [ ] -1 Do not release the packages because...
+Thanks!
+Pei
+P.S. Here is my +1.
+</pre></p>
+<p>If VOTE passes with 3+ cTAKES PMC votes, move onto next step. If VOTE does not pass, repeat steps 3-on until it does</p>
+<h3 id="publishing-artifacts-to-dist">Publishing Artifacts to dist</h3>
+<ol>
+<li>mvn release:perform</li>
+<li>commit the artifacts to https://dist.apache.org/repos/dist/release/incubator/ctakes/<release></li>
+</ol>
+<h3 id="creating-final-tag-from-rc-tag-after-vote-passes">Creating Final Tag from RC Tag after VOTE Passes</h3>
+<p>For example, if the VOTE for RCX passes for release A.B.C
+<pre>
+ svn copy \
+   https://svn.apache.org/repos/asf/incubator/ctakes/tags/ctakes-A.B.C-incubating-rcX  \
+   https://svn.apache.org/repos/asf/incubator/ctakes/tags/ctakes-A.B.C-incubating      \
+   -m "Copying tag of accepted RC for the release to final actual release tag"
+</pre></p>
+<h3 id="sending-announcement-email">Sending Announcement Email</h3>
+<p>Wait for versions to hit the mirrors (hint: keep checking http://www.apache.org/dyn/closer.cgi/oodt until you see something).
+Once release hits send announcement email to announce@a.o and ctakes-dev@ and ctakes-user@. This needs to be done from your @apache.org email address or the email will bounce from the announce list. Gmail forwarding can help here and is a snap to set up (http://gmailblog.blogspot.com/2009/07/send-mail-from-another-address-without.html). It's even easier then the instructions there as it will recognize your email address and default to Apache settings.</p>
+  </div>
+ 
+ <div id="footera">
+    <div id="copyrighta">
+      <p>Copyright &#169; 2011 The Apache Software Foundation, Licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.<br/>Apache and the Apache feather logo are trademarks of The Apache Software Foundation.</p>
+    </div>
+ </div>
+ 
+</body>
+</html>
+

Added: websites/staging/ctakes/trunk/content/developer-faqs.html
==============================================================================
--- websites/staging/ctakes/trunk/content/developer-faqs.html (added)
+++ websites/staging/ctakes/trunk/content/developer-faqs.html Fri Mar 29 13:20:30 2013
@@ -0,0 +1,117 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<html>
+<head>
+<!--
+ 
+    Licensed to the Apache Software Foundation (ASF) under one or more
+    contributor license agreements.  See the NOTICE file distributed with
+    this work for additional information regarding copyright ownership.
+    The ASF licenses this file to You under the Apache License, Version 2.0
+    (the "License"); you may not use this file except in compliance with
+    the License.  You may obtain a copy of the License at
+ 
+       http://www.apache.org/licenses/LICENSE- 2.0
+ 
+    Unless required by applicable law or agreed to in writing, software
+    distributed under the License is distributed on an "AS IS" BASIS,
+    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+    See the License for the specific language governing permissions and
+    limitations under the License.
+-->
+
+<link href="/ctakes/css/ctakes.css" rel="stylesheet" type="text/css">
+
+<title>Apache cTAKES - Developer FAQs</title>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+
+</head>
+ 
+<body>
+ <div class="banner">
+      <div id="bannerleft">
+		<a href="http://www.apache.org/"><img src="http://www.apache.org/images/asf_logo_wide.gif" alt="The Apache Software Foundation" border="0"/></a>
+	<br/>
+			<img alt="cTAKES logo" src="/ctakes/images/ctakes_logo.jpg" border="0"/>
+      </div>  
+    <div id="bannerright">	
+	      <img id="asf-logo" alt="Apache Incubator" src="http://incubator.apache.org/images/egg-logo.png" border="0"/></a>			
+	  </div>
+ </div>  
+  <div id="clear"></div>
+
+
+  <div id="sidenav">
+    <h1 id="general">General</h1>
+<ul>
+<li><a href="/ctakes/index.html">About</a></li>
+<li><a href="/ctakes/gettingstarted.html">Getting Started</a></li>
+<li><a href="/ctakes/downloads.cgi">Downloads</a></li>
+<li><a href="/ctakes/glossary.html">Glossary</a></li>
+<li><a href="/ctakes/roadmap.html">Archives</a></li>
+</ul>
+<h1 id="community">Community</h1>
+<ul>
+<li><a href="/ctakes/get-involved.html">Get Involved</a></li>
+<li><a href="https://issues.apache.org/jira/browse/ctakes">Bug Tracker</a></li>
+<li><a href="/ctakes/mailing-lists.html">Mailing Lists</a></li>
+<li><a href="/ctakes/people.html">People</a></li>
+<li><a href="http://incubator.apache.org/projects/ctakes.html">Incubator page</a></li>
+<li><a href="/ctakes/license.html">License</a></li>
+<li><a href="/ctakes/history.html">History</a></li>
+<li><a href="/ctakes/community-faqs.html">Community FAQs</a></li>
+</ul>
+<h1 id="users">Users</h1>
+<ul>
+<li><a href="/ctakes/userguide.html">User Guide</a></li>
+<li><a href="/ctakes/user-faqs.html">User FAQs</a></li>
+</ul>
+<h1 id="developers">Developers</h1>
+<ul>
+<li><a href="/ctakes/developerguide.html">Developer Guide</a></li>
+<li><a href="/ctakes/developer-faqs.html">Developer FAQs</a></li>
+</ul>
+<h1 id="ppmc">PPMC</h1>
+<ul>
+<li><a href="/ctakes/ppmc-faqs.html">PPMC FAQs</a></li>
+<li><a href="/ctakes/ctakes-release-guide.html">Release Guide</a> <br />
+</li>
+</ul>
+<h1 id="asf">ASF</h1>
+<ul>
+<li><a href="http://www.apache.org">Apache Software Foundation</a></li>
+<li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+<li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+</ul>
+  </div>
+  <div id="contenta">
+    <div class="toc">
+<ul>
+<li><a href="#how-do-i-discuss-questions-about-ctakes-with-people-that-know-more-than-i-do">How do I discuss questions about cTAKES with people that know more than I do?</a></li>
+<li><a href="#how-do-i-report-problems-i-see-while-using-ctakes">How do I report problems I see while using cTAKES?</a></li>
+<li><a href="#how-does-the-ctakes-project-manage-the-trunk-tags-and-branches-in-svn">How does the cTAKES project manage the trunk, tags, and branches in SVN?</a></li>
+</ul>
+</div>
+<h3 id="how-do-i-discuss-questions-about-ctakes-with-people-that-know-more-than-i-do">How do I discuss questions about cTAKES with people that know more than I do?</h3>
+<p>In the past, cTAKES was discussed in phpBB forums. Apache mailing lists are now used instead.
+If you are modifying cTAKES beyond just configuration then subscribe to the <a href="http://incubator.apache.org/ctakes/mailing-lists.html#development-mailing-list">developer's mailing list</a>.
+You can also just look through or search all discussion in the Apache mailing lists. See the <a href="http://incubator.apache.org/ctakes/mailing-lists.html">Mailing Lists page</a> to find links to the archives.</p>
+<p>It may be of use to search the old forums as many questions about past releases (2.5 and before) have been asked and answered there in the <a href="https://cabig-kc.nci.nih.gov/Vocab/forums/viewforum.php?f=29">cTAKES Developer forum</a>.</p>
+<h3 id="how-do-i-report-problems-i-see-while-using-ctakes">How do I report problems I see while using cTAKES?</h3>
+<p>Submit issues using <a href="https://issues.apache.org/jira/browse/ctakes">JIRA</a>. Anyone may read the issues. You must be a contributor to add or edit issues.</p>
+<h3 id="how-does-the-ctakes-project-manage-the-trunk-tags-and-branches-in-svn">How does the cTAKES project manage the trunk, tags, and branches in SVN?</h3>
+<ul>
+<li>Trunk - Developers should checkout code from the trunk if they will be contributing code to cTAKES. Realize that this could be unstable at any point in time. You could use a stable tag and then when it comes time to check in you would checkout from trunk and merge into there. </li>
+<li>Branches - cTAKES uses SVN branches for major releases and one-off attempts at major functions. One-off attempts may or may not be merged back into the trunk in the future. Checkout from a branch only if you know you are part of that feature. </li>
+<li>Tags - cTAKES uses SVN tags to delineate release candidates, betas, major releases and any other stable points in time off of the trunk. You should only checkout from a tag as the release manager or for bug fixes going into patch releases.</li>
+</ul>
+  </div>
+ 
+ <div id="footera">
+    <div id="copyrighta">
+      <p>Copyright &#169; 2011 The Apache Software Foundation, Licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.<br/>Apache and the Apache feather logo are trademarks of The Apache Software Foundation.</p>
+    </div>
+ </div>
+ 
+</body>
+</html>
+

Added: websites/staging/ctakes/trunk/content/developerguide.html
==============================================================================
--- websites/staging/ctakes/trunk/content/developerguide.html (added)
+++ websites/staging/ctakes/trunk/content/developerguide.html Fri Mar 29 13:20:30 2013
@@ -0,0 +1,111 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<html>
+<head>
+<!--
+ 
+    Licensed to the Apache Software Foundation (ASF) under one or more
+    contributor license agreements.  See the NOTICE file distributed with
+    this work for additional information regarding copyright ownership.
+    The ASF licenses this file to You under the Apache License, Version 2.0
+    (the "License"); you may not use this file except in compliance with
+    the License.  You may obtain a copy of the License at
+ 
+       http://www.apache.org/licenses/LICENSE- 2.0
+ 
+    Unless required by applicable law or agreed to in writing, software
+    distributed under the License is distributed on an "AS IS" BASIS,
+    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+    See the License for the specific language governing permissions and
+    limitations under the License.
+-->
+
+<link href="/ctakes/css/ctakes.css" rel="stylesheet" type="text/css">
+
+<title>Apache cTAKES - Developer Guide</title>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+
+</head>
+ 
+<body>
+ <div class="banner">
+      <div id="bannerleft">
+		<a href="http://www.apache.org/"><img src="http://www.apache.org/images/asf_logo_wide.gif" alt="The Apache Software Foundation" border="0"/></a>
+	<br/>
+			<img alt="cTAKES logo" src="/ctakes/images/ctakes_logo.jpg" border="0"/>
+      </div>  
+    <div id="bannerright">	
+	      <img id="asf-logo" alt="Apache Incubator" src="http://incubator.apache.org/images/egg-logo.png" border="0"/></a>			
+	  </div>
+ </div>  
+  <div id="clear"></div>
+
+
+  <div id="sidenav">
+    <h1 id="general">General</h1>
+<ul>
+<li><a href="/ctakes/index.html">About</a></li>
+<li><a href="/ctakes/gettingstarted.html">Getting Started</a></li>
+<li><a href="/ctakes/downloads.cgi">Downloads</a></li>
+<li><a href="/ctakes/glossary.html">Glossary</a></li>
+<li><a href="/ctakes/roadmap.html">Archives</a></li>
+</ul>
+<h1 id="community">Community</h1>
+<ul>
+<li><a href="/ctakes/get-involved.html">Get Involved</a></li>
+<li><a href="https://issues.apache.org/jira/browse/ctakes">Bug Tracker</a></li>
+<li><a href="/ctakes/mailing-lists.html">Mailing Lists</a></li>
+<li><a href="/ctakes/people.html">People</a></li>
+<li><a href="http://incubator.apache.org/projects/ctakes.html">Incubator page</a></li>
+<li><a href="/ctakes/license.html">License</a></li>
+<li><a href="/ctakes/history.html">History</a></li>
+<li><a href="/ctakes/community-faqs.html">Community FAQs</a></li>
+</ul>
+<h1 id="users">Users</h1>
+<ul>
+<li><a href="/ctakes/userguide.html">User Guide</a></li>
+<li><a href="/ctakes/user-faqs.html">User FAQs</a></li>
+</ul>
+<h1 id="developers">Developers</h1>
+<ul>
+<li><a href="/ctakes/developerguide.html">Developer Guide</a></li>
+<li><a href="/ctakes/developer-faqs.html">Developer FAQs</a></li>
+</ul>
+<h1 id="ppmc">PPMC</h1>
+<ul>
+<li><a href="/ctakes/ppmc-faqs.html">PPMC FAQs</a></li>
+<li><a href="/ctakes/ctakes-release-guide.html">Release Guide</a> <br />
+</li>
+</ul>
+<h1 id="asf">ASF</h1>
+<ul>
+<li><a href="http://www.apache.org">Apache Software Foundation</a></li>
+<li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+<li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+</ul>
+  </div>
+  <div id="contenta">
+    <p>Developers are defined on the <a href="http://incubator.apache.org/ctakes/gettingstarted.html">Getting Started</a> page. </p>
+<h2 id="current-stable-release">Current Stable Release</h2>
+<h3 id="apache-ctakes-30">Apache cTAKES 3.0</h3>
+<p>This is the first release as an Apache incubator project.</p>
+<ul>
+<li><a href="https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12313621&amp;version=12322969">Release notes</a></li>
+<li><a href="https://cwiki.apache.org/confluence/x/ZRjVAQ">Developer Install Guide</a></li>
+<li>Check out at <a href="https://svn.apache.org/repos/asf/incubator/ctakes/trunk">https://svn.apache.org/repos/asf/incubator/ctakes/trunk</a></li>
+<li>Browse the <a href="http://svn.apache.org/viewvc/incubator/ctakes/tags/ctakes-3.0.0-incubating/">source code</a></li>
+</ul>
+<h2 id="future-release">Future Release</h2>
+<ul>
+<li>Browse the <a href="https://svn.apache.org/viewvc/incubator/ctakes/trunk/">cTAKES main trunk</a> (may be unstable)</li>
+</ul>
+  </div>
+ 
+ <div id="footera">
+    <div id="copyrighta">
+      <p>Copyright &#169; 2011 The Apache Software Foundation, Licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.<br/>Apache and the Apache feather logo are trademarks of The Apache Software Foundation.</p>
+    </div>
+ </div>
+ 
+</body>
+</html>
+

Added: websites/staging/ctakes/trunk/content/downloads.cgi
==============================================================================
--- websites/staging/ctakes/trunk/content/downloads.cgi (added)
+++ websites/staging/ctakes/trunk/content/downloads.cgi Fri Mar 29 13:20:30 2013
@@ -0,0 +1,22 @@
+#!/bin/sh
+
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements.  See the NOTICE file distributed with
+# this work for additional information regarding copyright ownership.
+# The ASF licenses this file to You under the Apache License, Version 2.0
+# (the "License"); you may not use this file except in compliance with
+# the License.  You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+# Wrapper script around mirrors.cgi script
+# (we must change to that directory in order for python to pick up the
+#  python includes correctly)
+cd /www/www.apache.org/dyn/mirrors
+/www/www.apache.org/dyn/mirrors/mirrors.cgi $*
\ No newline at end of file

Added: websites/staging/ctakes/trunk/content/downloads.html
==============================================================================
--- websites/staging/ctakes/trunk/content/downloads.html (added)
+++ websites/staging/ctakes/trunk/content/downloads.html Fri Mar 29 13:20:30 2013
@@ -0,0 +1,163 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<html>
+<head>
+<!--
+ 
+    Licensed to the Apache Software Foundation (ASF) under one or more
+    contributor license agreements.  See the NOTICE file distributed with
+    this work for additional information regarding copyright ownership.
+    The ASF licenses this file to You under the Apache License, Version 2.0
+    (the "License"); you may not use this file except in compliance with
+    the License.  You may obtain a copy of the License at
+ 
+       http://www.apache.org/licenses/LICENSE- 2.0
+ 
+    Unless required by applicable law or agreed to in writing, software
+    distributed under the License is distributed on an "AS IS" BASIS,
+    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+    See the License for the specific language governing permissions and
+    limitations under the License.
+-->
+
+<link href="/ctakes/css/ctakes.css" rel="stylesheet" type="text/css">
+
+<title>Apache cTAKES - Downloads</title>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+
+</head>
+ 
+<body>
+ <div class="banner">
+      <div id="bannerleft">
+		<a href="http://www.apache.org/"><img src="http://www.apache.org/images/asf_logo_wide.gif" alt="The Apache Software Foundation" border="0"/></a>
+	<br/>
+			<img alt="cTAKES logo" src="/ctakes/images/ctakes_logo.jpg" border="0"/>
+      </div>  
+    <div id="bannerright">	
+	      <img id="asf-logo" alt="Apache Incubator" src="http://incubator.apache.org/images/egg-logo.png" border="0"/></a>			
+	  </div>
+ </div>  
+  <div id="clear"></div>
+
+
+  <div id="sidenav">
+    <h1 id="general">General</h1>
+<ul>
+<li><a href="/ctakes/index.html">About</a></li>
+<li><a href="/ctakes/gettingstarted.html">Getting Started</a></li>
+<li><a href="/ctakes/downloads.cgi">Downloads</a></li>
+<li><a href="/ctakes/glossary.html">Glossary</a></li>
+<li><a href="/ctakes/roadmap.html">Archives</a></li>
+</ul>
+<h1 id="community">Community</h1>
+<ul>
+<li><a href="/ctakes/get-involved.html">Get Involved</a></li>
+<li><a href="https://issues.apache.org/jira/browse/ctakes">Bug Tracker</a></li>
+<li><a href="/ctakes/mailing-lists.html">Mailing Lists</a></li>
+<li><a href="/ctakes/people.html">People</a></li>
+<li><a href="http://incubator.apache.org/projects/ctakes.html">Incubator page</a></li>
+<li><a href="/ctakes/license.html">License</a></li>
+<li><a href="/ctakes/history.html">History</a></li>
+<li><a href="/ctakes/community-faqs.html">Community FAQs</a></li>
+</ul>
+<h1 id="users">Users</h1>
+<ul>
+<li><a href="/ctakes/userguide.html">User Guide</a></li>
+<li><a href="/ctakes/user-faqs.html">User FAQs</a></li>
+</ul>
+<h1 id="developers">Developers</h1>
+<ul>
+<li><a href="/ctakes/developerguide.html">Developer Guide</a></li>
+<li><a href="/ctakes/developer-faqs.html">Developer FAQs</a></li>
+</ul>
+<h1 id="ppmc">PPMC</h1>
+<ul>
+<li><a href="/ctakes/ppmc-faqs.html">PPMC FAQs</a></li>
+<li><a href="/ctakes/ctakes-release-guide.html">Release Guide</a> <br />
+</li>
+</ul>
+<h1 id="asf">ASF</h1>
+<ul>
+<li><a href="http://www.apache.org">Apache Software Foundation</a></li>
+<li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+<li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+</ul>
+  </div>
+  <div id="contenta">
+    <p>Use the links below to download Apache cTAKES (incubating) from one of our mirrors. It is good practice to verify the integrity of the distribution files, using the signatures and checksums listed in the signatures column as asc, md5, or sha1.</p>
+<p>Only the current recommended releases are available on the main distribution site and its mirrors. Older releases are available from the archive download site.</p>
+<p>cTAKES is distributed as both source and binary (ready-to-use) packages. These are available in zip and tar.gz formats.</p>
+<h2 id="latest-official-release">Latest Official Release</h2>
+<h3 id="apache-ctakes-300-incubating">Apache cTAKES 3.0.0-incubating</h3>
+<p>Use the <a href="https://cwiki.apache.org/confluence/x/XBjVAQ">User</a> or <a href="https://cwiki.apache.org/confluence/x/ZRjVAQ">Developer</a> Install Guide to direct you through the installation process.</p>
+<p>If the current mirror <b>[preferred]</b> returns an error, select another:<form action="./downloads.cgi" method="get" id="SelectMirror">
+<select name="preferred">
+<option value="http://mirrors.sonic.net/apache/">http://mirrors.sonic.net/apache/</option><option value="http://apache.mesi.com.ar/">http://apache.mesi.com.ar/</option><option value="http://apache.claz.org/">http://apache.claz.org/</option><option value="http://www.trieuvan.com/apache/">http://www.trieuvan.com/apache/</option><option value="http://apache.tradebit.com/pub/">http://apache.tradebit.com/pub/</option><option value="http://www.linuxtourist.com/apache/">http://www.linuxtourist.com/apache/</option><option value="http://mirror.nexcess.net/apache/">http://mirror.nexcess.net/apache/</option><option value="http://mirror.sdunix.com/apache/">http://mirror.sdunix.com/apache/</option><option value="http://www.gtlib.gatech.edu/pub/apache/">http://www.gtlib.gatech.edu/pub/apache/</option><option value="http://apache.mirrors.lucidnetworks.net/">http://apache.mirrors.lucidnetworks.net/</option><option value="http://mirror.quintex.com/apache/">http://mirror.quintex.com/apache/</
 option><option value="http://mirrors.ibiblio.org/apache/">http://mirrors.ibiblio.org/apache/</option><option value="http://download.nextag.com/apache/">http://download.nextag.com/apache/</option><option value="http://apache.cs.utah.edu/">http://apache.cs.utah.edu/</option><option value="http://apache.osuosl.org/">http://apache.osuosl.org/</option><option value="http://apache.mirrors.tds.net/">http://apache.mirrors.tds.net/</option><option value="http://www.eng.lsu.edu/mirrors/apache/">http://www.eng.lsu.edu/mirrors/apache/</option><option value="http://mirror.cogentco.com/pub/apache/">http://mirror.cogentco.com/pub/apache/</option><option value="http://apache.petsads.us/">http://apache.petsads.us/</option><option value="http://mirror.reverse.net/pub/apache/">http://mirror.reverse.net/pub/apache/</option><option value="http://mirror.cc.columbia.edu/pub/software/apache/">http://mirror.cc.columbia.edu/pub/software/apache/</option><option value="http://www.motorlogy.com/apache/"
 >http://www.motorlogy.com/apache/</option><option value="http://www.alliedquotes.com/mirrors/apache/">http://www.alliedquotes.com/mirrors/apache/</option><option value="http://mirrors.gigenet.com/apache/">http://mirrors.gigenet.com/apache/</option><option value="http://mirror.symnds.com/software/Apache/">http://mirror.symnds.com/software/Apache/</option><option value="http://www.bizdirusa.com/mirrors/apache/">http://www.bizdirusa.com/mirrors/apache/</option><option value="http://mirror.metrocast.net/apache/">http://mirror.metrocast.net/apache/</option><option value="http://apache.spinellicreations.com/">http://apache.spinellicreations.com/</option><option value="http://www.fightrice.com/mirrors/apache/">http://www.fightrice.com/mirrors/apache/</option><option value="http://apache.mirrors.pair.com/">http://apache.mirrors.pair.com/</option><option value="http://www.carfab.com/apachesoftware/">http://www.carfab.com/apachesoftware/</option><option value="http://mirror.olnevhost.
 net/pub/apache/">http://mirror.olnevhost.net/pub/apache/</option><option value="http://www.poolsaboveground.com/apache/">http://www.poolsaboveground.com/apache/</option><option value="http://apache.mirrors.hoobly.com/">http://apache.mirrors.hoobly.com/</option><option value="http://www.globalish.com/am/">http://www.globalish.com/am/</option><option value="ftp://mirror.reverse.net/pub/apache/">ftp://mirror.reverse.net/pub/apache/</option><option value="ftp://linux-files.com/apache/">ftp://linux-files.com/apache/</option><option value="ftp://apache.mirrors.tds.net/pub/apache.org/">ftp://apache.mirrors.tds.net/pub/apache.org/</option><option value="ftp://ftp.osuosl.org/pub/apache/">ftp://ftp.osuosl.org/pub/apache/</option><option value="ftp://apache.cs.utah.edu/apache.org/">ftp://apache.cs.utah.edu/apache.org/</option><option value="ftp://apache.mirrors.pair.com/">ftp://apache.mirrors.pair.com/</option><option value="http://www.eu.apache.org/dist/">http://www.eu.apache.org/dist
 / (backup)</option><option value="http://www.us.apache.org/dist/">http://www.us.apache.org/dist/ (backup)</option>
+</select>
+<input type="submit" value="Change" /> You may also consult the <a href="http://www.apache.org/mirrors/">complete list of mirrors</a>.</form></p>
+<table>
+<thead>
+<tr>
+<th>File</th>
+<th>Signatures</th>
+</tr>
+</thead>
+<tbody>
+<tr>
+<td><a href="[preferred]/incubator/ctakes/apache-ctakes-3.0.0-incubating-bin.tar.gz">apache-ctakes-3.0.0-incubating-bin.tar.gz</a></td>
+<td><a href="http://www.apache.org/dist/incubator/ctakes/apache-ctakes-3.0.0-incubating-bin.tar.gz.md5">md5</a>  <a href="http://www.apache.org/dist/incubator/ctakes/apache-ctakes-3.0.0-incubating-bin.tar.gz.sha1">sha1</a> <a href="http://www.apache.org/dist/incubator/ctakes/apache-ctakes-3.0.0-incubating-bin.tar.gz.asc">asc</a></td>
+</tr>
+<tr>
+<td><a href="[preferred]/incubator/ctakes/apache-ctakes-3.0.0-incubating-bin.zip">apache-ctakes-3.0.0-incubating-bin.zip</a></td>
+<td><a href="http://www.apache.org/dist/incubator/ctakes/apache-ctakes-3.0.0-incubating-bin.zip.md5">md5</a>  <a href="http://www.apache.org/dist/incubator/ctakes/apache-ctakes-3.0.0-incubating-bin.zip.sha1">sha1</a> <a href="http://www.apache.org/dist/incubator/ctakes/apache-ctakes-3.0.0-incubating-bin.zip.asc">asc</a></td>
+</tr>
+<tr>
+<td><a href="[preferred]/incubator/ctakes/apache-ctakes-3.0.0-incubating-src.tar.gz">apache-ctakes-3.0.0-incubating-src.tar.gz</a></td>
+<td><a href="http://www.apache.org/dist/incubator/ctakes/apache-ctakes-3.0.0-incubating-src.tar.gz.md5">md5</a>  <a href="http://www.apache.org/dist/incubator/ctakes/apache-ctakes-3.0.0-incubating-src.tar.gz.sha1">sha1</a> <a href="http://www.apache.org/dist/incubator/ctakes/apache-ctakes-3.0.0-incubating-src.tar.gz.asc">asc</a></td>
+</tr>
+<tr>
+<td><a href="[preferred]/incubator/ctakes/apache-ctakes-3.0.0-incubating-src.zip">apache-ctakes-3.0.0-incubating-src.zip</a></td>
+<td><a href="http://www.apache.org/dist/incubator/ctakes/apache-ctakes-3.0.0-incubating-src.zip.md5">md5</a>  <a href="http://www.apache.org/dist/incubator/ctakes/apache-ctakes-3.0.0-incubating-src.zip.sha1">sha1</a> <a href="http://www.apache.org/dist/incubator/ctakes/apache-ctakes-3.0.0-incubating-src.zip.asc">asc</a></td>
+</tr>
+</tbody>
+</table>
+<p>Note: The tar.gz archives contain file names longer than 100 characters and have
+been created using GNU tar extensions. It must be untarred with a GNU compatible version of tar.</p>
+<h3 id="resources-models">Resources &amp; Models</h3>
+<p>Trained models and resources are <strong>required</strong> to run cTAKES.  They are available for download from SourceForge:
+<a href="http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-3.0.1.zip/download">ctakes-resources-3.0.1.zip</a>.</p>
+<p>Please download, unzip and add/merge the contents to the existing resources directory. Follow the <a href="https://cwiki.apache.org/confluence/x/XBjVAQ">User</a> or <a href="https://cwiki.apache.org/confluence/x/ZRjVAQ">Developer</a> Install Guide to direct you through the installation process.</p>
+<h3 id="release-notes-and-news">Release Notes and News</h3>
+<p>Trained models and resources are <strong>required</strong> to run 3.0.  See above.</p>
+<p>A new <a href="https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.0+-+Relation+Extractor">relation extractor</a> component is included in 3.0.</p>
+<p>A full New Feature, (fixed) Bugs, and Improvements list is <a href="https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12313621&amp;version=12322969">here</a>.</p>
+<h3 id="verifying-signatures">Verifying Signatures</h3>
+<p>The md5, sha1 and asc files are signature files and can be used to verify the integrity of the
+downloaded distribution package.</p>
+<p>Use the following commands to verify the integrity:</p>
+<ul>
+<li>gpg --print-md MD5 fileName.zip</li>
+<li>gpg --print-md SHA1 fileName.tar.gz</li>
+<li>gpg --verify fileName.tar.gz.asc</li>
+</ul>
+<p>It might be necessary to import the KEYS file to verify the integrity
+of the asc files.</p>
+<p>That can be done with:</p>
+<ul>
+<li>gpg --import KEYS</li>
+</ul>
+<p>More information about release signing and verifying signatures can 
+be found <a href="http://www.apache.org/dev/release-signing.html">here</a>.</p>
+<h2 id="previous-releases">Previous Releases</h2>
+<p>Releases prior to 3.0 are documented on the <a href="https://wiki.nci.nih.gov/pages/viewpage.action?pageId=65733244">NIH wiki</a>.</p>
+  </div>
+ 
+ <div id="footera">
+    <div id="copyrighta">
+      <p>Copyright &#169; 2011 The Apache Software Foundation, Licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.<br/>Apache and the Apache feather logo are trademarks of The Apache Software Foundation.</p>
+    </div>
+ </div>
+ 
+</body>
+</html>
+

Added: websites/staging/ctakes/trunk/content/get-involved.html
==============================================================================
--- websites/staging/ctakes/trunk/content/get-involved.html (added)
+++ websites/staging/ctakes/trunk/content/get-involved.html Fri Mar 29 13:20:30 2013
@@ -0,0 +1,133 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<html>
+<head>
+<!--
+ 
+    Licensed to the Apache Software Foundation (ASF) under one or more
+    contributor license agreements.  See the NOTICE file distributed with
+    this work for additional information regarding copyright ownership.
+    The ASF licenses this file to You under the Apache License, Version 2.0
+    (the "License"); you may not use this file except in compliance with
+    the License.  You may obtain a copy of the License at
+ 
+       http://www.apache.org/licenses/LICENSE- 2.0
+ 
+    Unless required by applicable law or agreed to in writing, software
+    distributed under the License is distributed on an "AS IS" BASIS,
+    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+    See the License for the specific language governing permissions and
+    limitations under the License.
+-->
+
+<link href="/ctakes/css/ctakes.css" rel="stylesheet" type="text/css">
+
+<title>Apache cTAKES - Get Involved</title>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+
+</head>
+ 
+<body>
+ <div class="banner">
+      <div id="bannerleft">
+		<a href="http://www.apache.org/"><img src="http://www.apache.org/images/asf_logo_wide.gif" alt="The Apache Software Foundation" border="0"/></a>
+	<br/>
+			<img alt="cTAKES logo" src="/ctakes/images/ctakes_logo.jpg" border="0"/>
+      </div>  
+    <div id="bannerright">	
+	      <img id="asf-logo" alt="Apache Incubator" src="http://incubator.apache.org/images/egg-logo.png" border="0"/></a>			
+	  </div>
+ </div>  
+  <div id="clear"></div>
+
+
+  <div id="sidenav">
+    <h1 id="general">General</h1>
+<ul>
+<li><a href="/ctakes/index.html">About</a></li>
+<li><a href="/ctakes/gettingstarted.html">Getting Started</a></li>
+<li><a href="/ctakes/downloads.cgi">Downloads</a></li>
+<li><a href="/ctakes/glossary.html">Glossary</a></li>
+<li><a href="/ctakes/roadmap.html">Archives</a></li>
+</ul>
+<h1 id="community">Community</h1>
+<ul>
+<li><a href="/ctakes/get-involved.html">Get Involved</a></li>
+<li><a href="https://issues.apache.org/jira/browse/ctakes">Bug Tracker</a></li>
+<li><a href="/ctakes/mailing-lists.html">Mailing Lists</a></li>
+<li><a href="/ctakes/people.html">People</a></li>
+<li><a href="http://incubator.apache.org/projects/ctakes.html">Incubator page</a></li>
+<li><a href="/ctakes/license.html">License</a></li>
+<li><a href="/ctakes/history.html">History</a></li>
+<li><a href="/ctakes/community-faqs.html">Community FAQs</a></li>
+</ul>
+<h1 id="users">Users</h1>
+<ul>
+<li><a href="/ctakes/userguide.html">User Guide</a></li>
+<li><a href="/ctakes/user-faqs.html">User FAQs</a></li>
+</ul>
+<h1 id="developers">Developers</h1>
+<ul>
+<li><a href="/ctakes/developerguide.html">Developer Guide</a></li>
+<li><a href="/ctakes/developer-faqs.html">Developer FAQs</a></li>
+</ul>
+<h1 id="ppmc">PPMC</h1>
+<ul>
+<li><a href="/ctakes/ppmc-faqs.html">PPMC FAQs</a></li>
+<li><a href="/ctakes/ctakes-release-guide.html">Release Guide</a> <br />
+</li>
+</ul>
+<h1 id="asf">ASF</h1>
+<ul>
+<li><a href="http://www.apache.org">Apache Software Foundation</a></li>
+<li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+<li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+</ul>
+  </div>
+  <div id="contenta">
+    <h2 id="involved">Involved?</h2>
+<p>You don't need to be a software developer to contribute to 
+Apache cTAKES. To be successful this project 
+requires a range of different skills, levels of involvement and degrees of 
+technical expertise. So, if you want to get involved in Apache cTAKES, there 
+is almost certainly a role for you. </p>
+<p>We are looking for people to:</p>
+<ul>
+<li>provide feedback</li>
+<li>ask and answer questions on mailing lists</li>
+<li>write or update documentation</li>
+<li>help new users</li>
+<li>recommend the project to others</li>
+<li>test the code and report bugs</li>
+<li>fix bugs</li>
+<li>give us feedback on required features</li>
+<li>write and update the software</li>
+<li>create artwork</li>
+<li>anything you can see that needs doing</li>
+</ul>
+<p>All of these contributions help to keep a project active and strengthen 
+the community. The project team and the broader community will 
+therefore welcome and encourage participation, and attempt to make it 
+as easy as possible for people to get involved. Apache defines it <a href="http://incubator.apache.org/guides/participation.html">this way</a>.</p>
+<h2 id="steps-of-involvement">Steps of involvement</h2>
+<p>Your first engagement with the project would probably be to subscribe to our <a href="http://incubator.apache.org/ctakes/mailing-lists.html">mailing lists</a><br />
+and to try out cTAKES as a user. If this fits the bill or you see something you'd like to improve then possibly modify code or make other enhancements. 
+After working with the community for a little bit you will be recognized as someone who should have write access. Being a committee member may be in your future. 
+To begin down this path see the <a href="http://incubator.apache.org/ctakes/gettingstarted.html">Getting Started</a> pages. </p>
+<h2 id="decision-making">Decision Making</h2>
+<p>The most important thing about engaging with any Apache project is that everyone
+is equal. All people with an opinion are entitled to express that opinion and, where 
+appropriate, have it considered by the community.</p>
+<p>To some the idea of having to establish consensus in a large and distributed team 
+sounds inefficient and frustrating. Don't despair though, The Apache Way has a
+set of simple processes to ensure things proceed at a good pace.</p>
+  </div>
+ 
+ <div id="footera">
+    <div id="copyrighta">
+      <p>Copyright &#169; 2011 The Apache Software Foundation, Licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.<br/>Apache and the Apache feather logo are trademarks of The Apache Software Foundation.</p>
+    </div>
+ </div>
+ 
+</body>
+</html>
+

Added: websites/staging/ctakes/trunk/content/gettingstarted.html
==============================================================================
--- websites/staging/ctakes/trunk/content/gettingstarted.html (added)
+++ websites/staging/ctakes/trunk/content/gettingstarted.html Fri Mar 29 13:20:30 2013
@@ -0,0 +1,147 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<html>
+<head>
+<!--
+ 
+    Licensed to the Apache Software Foundation (ASF) under one or more
+    contributor license agreements.  See the NOTICE file distributed with
+    this work for additional information regarding copyright ownership.
+    The ASF licenses this file to You under the Apache License, Version 2.0
+    (the "License"); you may not use this file except in compliance with
+    the License.  You may obtain a copy of the License at
+ 
+       http://www.apache.org/licenses/LICENSE- 2.0
+ 
+    Unless required by applicable law or agreed to in writing, software
+    distributed under the License is distributed on an "AS IS" BASIS,
+    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+    See the License for the specific language governing permissions and
+    limitations under the License.
+-->
+
+<link href="/ctakes/css/ctakes.css" rel="stylesheet" type="text/css">
+
+<title>Apache cTAKES - Getting Started</title>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+
+</head>
+ 
+<body>
+ <div class="banner">
+      <div id="bannerleft">
+		<a href="http://www.apache.org/"><img src="http://www.apache.org/images/asf_logo_wide.gif" alt="The Apache Software Foundation" border="0"/></a>
+	<br/>
+			<img alt="cTAKES logo" src="/ctakes/images/ctakes_logo.jpg" border="0"/>
+      </div>  
+    <div id="bannerright">	
+	      <img id="asf-logo" alt="Apache Incubator" src="http://incubator.apache.org/images/egg-logo.png" border="0"/></a>			
+	  </div>
+ </div>  
+  <div id="clear"></div>
+
+
+  <div id="sidenav">
+    <h1 id="general">General</h1>
+<ul>
+<li><a href="/ctakes/index.html">About</a></li>
+<li><a href="/ctakes/gettingstarted.html">Getting Started</a></li>
+<li><a href="/ctakes/downloads.cgi">Downloads</a></li>
+<li><a href="/ctakes/glossary.html">Glossary</a></li>
+<li><a href="/ctakes/roadmap.html">Archives</a></li>
+</ul>
+<h1 id="community">Community</h1>
+<ul>
+<li><a href="/ctakes/get-involved.html">Get Involved</a></li>
+<li><a href="https://issues.apache.org/jira/browse/ctakes">Bug Tracker</a></li>
+<li><a href="/ctakes/mailing-lists.html">Mailing Lists</a></li>
+<li><a href="/ctakes/people.html">People</a></li>
+<li><a href="http://incubator.apache.org/projects/ctakes.html">Incubator page</a></li>
+<li><a href="/ctakes/license.html">License</a></li>
+<li><a href="/ctakes/history.html">History</a></li>
+<li><a href="/ctakes/community-faqs.html">Community FAQs</a></li>
+</ul>
+<h1 id="users">Users</h1>
+<ul>
+<li><a href="/ctakes/userguide.html">User Guide</a></li>
+<li><a href="/ctakes/user-faqs.html">User FAQs</a></li>
+</ul>
+<h1 id="developers">Developers</h1>
+<ul>
+<li><a href="/ctakes/developerguide.html">Developer Guide</a></li>
+<li><a href="/ctakes/developer-faqs.html">Developer FAQs</a></li>
+</ul>
+<h1 id="ppmc">PPMC</h1>
+<ul>
+<li><a href="/ctakes/ppmc-faqs.html">PPMC FAQs</a></li>
+<li><a href="/ctakes/ctakes-release-guide.html">Release Guide</a> <br />
+</li>
+</ul>
+<h1 id="asf">ASF</h1>
+<ul>
+<li><a href="http://www.apache.org">Apache Software Foundation</a></li>
+<li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+<li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+</ul>
+  </div>
+  <div id="contenta">
+    <h1 id="how-to-use-this-site">How to use this site</h1>
+<p>Welcome to our Apache project called cTAKES. 
+May we direct your attention to the resources in the navigation section on the left.</p>
+<p>&lt;&lt;&lt; Those right over there.</p>
+<p>If you need to know what cTAKES is, the About page in the <em>General</em> section will give you a cursory look at what cTAKES can do. 
+Downloads is best left alone until you are directed there by the documentation.</p>
+<p>The <em>Community</em> section is where you can interact with other people who use cTAKES as well as the people who contribute to the documentation and the code base.
+Use that part of the site to see how you can participate.</p>
+<p>Next you will see sections for <em>Users</em> and <em>Developers</em> and <em>PPMC</em> (which includes Committers). 
+Apache has their own <a href="http://incubator.apache.org/guides/participation.html">definition of users</a> matching these:</p>
+<ul>
+<li><strong>Users</strong> is for people who want to take a binary distribution of cTAKES and try it out or perhaps configure it for a run at annotating text in their enterprise.</li>
+<li><strong>Developers</strong> is for those looking to change or extend the code, compile and deploy the code, and annotate text for their enterprise. Developers are encouraged to contribute changes and fixes back to the community through a committer or by becoming a committer.</li>
+<li><strong>Committers</strong> are in the PPMC (Podling Project Management Committee). They check-in code for cTAKES, write documentation including this web site, help the community produce releases, vote as a community member, and more.</li>
+</ul>
+<p>The <em>ASF</em> (Apache Software Foundation) section has to do with administrating Apache projects in general.</p>
+<p>The bulk of the cTAKES documentation is on the <a href="https://cwiki.apache.org/confluence/x/PRjVAQ">Apache cTAKES wiki</a>. 
+You will eventually be directed there when you begin. 
+The following sections will help you begin depending on how you see yourself interacting with the cTAKES code and the community.</p>
+<h1 id="getting-started-as-a-user">Getting started as a user</h1>
+<p>Users are typically looking for the fastest way to get set up and try out the code. 
+For this use case, cTAKES distributes a binary file (combined with resources from a separate site) to get you started. 
+The downloads page is where you will go to find the latest stable binary distribution. </p>
+<p>If you feel comfortable installing from README text then you can go right to the downloads page and get started. 
+If you would like step-by-step instructions then look to the <a href="http://incubator.apache.org/ctakes/userguide.html">User Guide</a>. 
+The <a href="http://incubator.apache.org/ctakes/user-faqs.html">FAQs</a> are very helpful for initial questions.</p>
+<p>Being an Apache project, the source code is open to all. 
+If you care to, you can download the source distribution from the downloads page or simply point your browser to the <a href="http://svn.apache.org/viewvc/incubator/ctakes/">cTAKES source code</a>.</p>
+<h1 id="getting-started-as-a-developer">Getting started as a developer</h1>
+<p>Developers can also take a look at the code as a user does, but to do development you are going to need to checkout the code. Anyone can checkout the code, but you must get involved as a committer to actually check in code (or work closely with a committer who can).</p>
+<p>Developers will need a development environment of some kind. 
+Eclipse is popular, but your favorite command line tools or other IDEs will also work just fine. 
+cTAKES builds are based on <a href="http://maven.apache.org/">maven</a> (another Apache project), so your IDE must support maven.</p>
+<p>The <a href="http://incubator.apache.org/ctakes/developerguide.html">Developer Guide</a> and <a href="http://incubator.apache.org/ctakes/developer-faqs.html">FAQs</a> are where you want to start. 
+You will find an extremely short set of install and build instructions, for those that have been through this many times, as well as step-by-step install and build instructions. 
+Before you get started you'll want to know the conventions of how the Apache cTAKES committers use <a href="http://incubator.apache.org/ctakes/developer-faqs.html#how-does-the-ctakes-project-manage-the-trunk-tags-and-branches-in-svn">the trunk, branches, and tags</a>.</p>
+<h1 id="running-the-ctakes-annotators">Running the cTAKES annotators</h1>
+<p>So how do you get use out of cTAKES, in a nutshell? cTAKES is based on <a href="http://uima.apache.org/">UIMA</a> (another Apache project). UIMA brings a couple of GUI tools to the table for you to start getting an understanding of what the annotators do. 
+The install guides will show how to launch these tools (Developers your guide shows how to launch from Eclipse) and then how to process some test text. 
+After you understand what is going on you will be able to take out the GUIs and process large amounts of clinical text to meet your needs.
+In the end that's what this is all about.</p>
+<h1 id="getting-started-as-a-committer">Getting started as a committer</h1>
+<p>Before you are authorized to check in code or modify web pages you must go through a short process. 
+This process is defined in the <a href="http://incubator.apache.org/ctakes/ppmc-faqs.html">FAQs</a> for the PPMC. 
+For each part of cTAKES you will need some experience or be able to learn it. 
+Code is maintained in subversion and built using maven. 
+The documentation is maintained and served via Confluence. 
+This web site is build from Apache's CMS which is a markdown syntax and build process. 
+Issues are tracked via JIRA. 
+Communication is done via unique <a href="http://incubator.apache.org/ctakes/mailing-lists.html">email distribution lists</a>.</p>
+  </div>
+ 
+ <div id="footera">
+    <div id="copyrighta">
+      <p>Copyright &#169; 2011 The Apache Software Foundation, Licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.<br/>Apache and the Apache feather logo are trademarks of The Apache Software Foundation.</p>
+    </div>
+ </div>
+ 
+</body>
+</html>
+

Added: websites/staging/ctakes/trunk/content/glossary.html
==============================================================================
--- websites/staging/ctakes/trunk/content/glossary.html (added)
+++ websites/staging/ctakes/trunk/content/glossary.html Fri Mar 29 13:20:30 2013
@@ -0,0 +1,110 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<html>
+<head>
+<!--
+ 
+    Licensed to the Apache Software Foundation (ASF) under one or more
+    contributor license agreements.  See the NOTICE file distributed with
+    this work for additional information regarding copyright ownership.
+    The ASF licenses this file to You under the Apache License, Version 2.0
+    (the "License"); you may not use this file except in compliance with
+    the License.  You may obtain a copy of the License at
+ 
+       http://www.apache.org/licenses/LICENSE- 2.0
+ 
+    Unless required by applicable law or agreed to in writing, software
+    distributed under the License is distributed on an "AS IS" BASIS,
+    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+    See the License for the specific language governing permissions and
+    limitations under the License.
+-->
+
+<link href="/ctakes/css/ctakes.css" rel="stylesheet" type="text/css">
+
+<title>Apache cTAKES - Glossary</title>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+
+</head>
+ 
+<body>
+ <div class="banner">
+      <div id="bannerleft">
+		<a href="http://www.apache.org/"><img src="http://www.apache.org/images/asf_logo_wide.gif" alt="The Apache Software Foundation" border="0"/></a>
+	<br/>
+			<img alt="cTAKES logo" src="/ctakes/images/ctakes_logo.jpg" border="0"/>
+      </div>  
+    <div id="bannerright">	
+	      <img id="asf-logo" alt="Apache Incubator" src="http://incubator.apache.org/images/egg-logo.png" border="0"/></a>			
+	  </div>
+ </div>  
+  <div id="clear"></div>
+
+
+  <div id="sidenav">
+    <h1 id="general">General</h1>
+<ul>
+<li><a href="/ctakes/index.html">About</a></li>
+<li><a href="/ctakes/gettingstarted.html">Getting Started</a></li>
+<li><a href="/ctakes/downloads.cgi">Downloads</a></li>
+<li><a href="/ctakes/glossary.html">Glossary</a></li>
+<li><a href="/ctakes/roadmap.html">Archives</a></li>
+</ul>
+<h1 id="community">Community</h1>
+<ul>
+<li><a href="/ctakes/get-involved.html">Get Involved</a></li>
+<li><a href="https://issues.apache.org/jira/browse/ctakes">Bug Tracker</a></li>
+<li><a href="/ctakes/mailing-lists.html">Mailing Lists</a></li>
+<li><a href="/ctakes/people.html">People</a></li>
+<li><a href="http://incubator.apache.org/projects/ctakes.html">Incubator page</a></li>
+<li><a href="/ctakes/license.html">License</a></li>
+<li><a href="/ctakes/history.html">History</a></li>
+<li><a href="/ctakes/community-faqs.html">Community FAQs</a></li>
+</ul>
+<h1 id="users">Users</h1>
+<ul>
+<li><a href="/ctakes/userguide.html">User Guide</a></li>
+<li><a href="/ctakes/user-faqs.html">User FAQs</a></li>
+</ul>
+<h1 id="developers">Developers</h1>
+<ul>
+<li><a href="/ctakes/developerguide.html">Developer Guide</a></li>
+<li><a href="/ctakes/developer-faqs.html">Developer FAQs</a></li>
+</ul>
+<h1 id="ppmc">PPMC</h1>
+<ul>
+<li><a href="/ctakes/ppmc-faqs.html">PPMC FAQs</a></li>
+<li><a href="/ctakes/ctakes-release-guide.html">Release Guide</a> <br />
+</li>
+</ul>
+<h1 id="asf">ASF</h1>
+<ul>
+<li><a href="http://www.apache.org">Apache Software Foundation</a></li>
+<li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+<li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+</ul>
+  </div>
+  <div id="contenta">
+    <p><strong>CDA</strong> - Clinical Document Architecture – an HL7 XML-based standard for clinical documents.</p>
+<p><strong>component</strong> - cTAKES is made up of a number of components, some optional. Some components include a single annotator. Others, such as 'core', include multiple annotators. For example, 'core' includes a sentence detector annotator and a tokenizer annotator.</p>
+<p><strong>cTAKES</strong> - Clinical Text Analysis and Knowledge Extraction System</p>
+<p><strong>GENIA</strong> - A collection of biomedical literature. It has been compiled and annotated within the scope of the <a href="http://www-tsujii.is.s.u-tokyo.ac.jp/GENIA/">GENIA project</a>.</p>
+<p><strong>LVG</strong> - One of the NLM's Lexical Tools, used by cTAKES to find the normalized form of words. Refer to the <a href="http://lexsrv2.nlm.nih.gov/LexSysGroup/Projects/lvg/current/docs/userDoc/tools/lvg.html">LVG information on the NLM website</a>.</p>
+<p><strong>Orange Book</strong> - A list from the U.S. Food and Drug Administration (FDA) of FDA-approved prescription drugs, including new and generic drugs. Refer to the <a href="http://www.fda.gov/cder/orange/">Orange information on the FDA website</a>.</p>
+<p><strong>PEAR</strong> - Processing Engine Archive, the standard packaging (distribution) format for UIMA components. Refer to the <a href="http://uima.apache.org/doc-uima-pears.html">UMIA Pears information on the Apache website</a>.</p>
+<p><strong>Penn Treebank</strong> - Corpus of naturally-occurring text annotated for linguistic structure. Refer to the <a href="http://www.cis.upenn.edu/~treebank/">Treebank information on the University of Pennsylvania website</a>.</p>
+<p><strong>pipeline</strong> - Refers to one or more cTAKES components configured to process documents.</p>
+<p><strong>RxNORM</strong> - A "standardized nomenclature for clinical drugs," produced by the National Library of Medicine (NLM). Refer to the <a href="http://www.nlm.nih.gov/research/umls/rxnorm/">RxNORM information on the NLM website</a>.</p>
+<p><strong>SNOMED</strong> - Systematized Nomenclature of Medicine – Clinical Terms (SNOMED CT®), a comprehensive clinical terminology, originally created by the College of American Pathologists (CAP) and now owned, maintained, and distributed by the International Health Terminology Standards Development Organisation (IHTSDO). <a href="http://www.ihtsdo.org/snomed-ct/">Refer to SNOMED CT</a>. See also <a href="http://www.nlm.nih.gov/research/umls/Snomed/snomed_main.html">the SNOMED information on the NLM website</a>.</p>
+<p><strong>UIMA</strong> - Unstructured Information Management Architecture. Refer to the <a href="http://uima.apache.org/index.html">UMIA information on the Apache website</a>.</p>
+<p><strong>UMLS</strong> - U.S. National Library of Medicine's Unified Medical Language System®. Refer to the <a href="http://www.nlm.nih.gov/research/umls/">UMLS information on the NLM website</a>.</p>
+  </div>
+ 
+ <div id="footera">
+    <div id="copyrighta">
+      <p>Copyright &#169; 2011 The Apache Software Foundation, Licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.<br/>Apache and the Apache feather logo are trademarks of The Apache Software Foundation.</p>
+    </div>
+ </div>
+ 
+</body>
+</html>
+



Mime
View raw message