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From dlig...@apache.org
Subject svn commit: r1457952 - in /incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine: RelationExtractorAggregate.xml RelationExtractorPreprocessor.xml
Date Mon, 18 Mar 2013 20:03:26 GMT
Author: dligach
Date: Mon Mar 18 20:03:26 2013
New Revision: 1457952

URL: http://svn.apache.org/r1457952
Log:
Removed ExtractionPrepAnnotator from RelationExtractorPreprocessor and regenerated RelationExtractorAggregate

Modified:
    incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorAggregate.xml
    incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml

Modified: incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorAggregate.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorAggregate.xml?rev=1457952&r1=1457951&r2=1457952&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorAggregate.xml
(original)
+++ incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorAggregate.xml
Mon Mar 18 20:03:26 2013
@@ -147,9 +147,6 @@
                     <delegateAnalysisEngine key="DictionaryLookupAnnotatorDB">
                         <import location="../../../ctakes-dictionary-lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml"/>
                     </delegateAnalysisEngine>
-                    <delegateAnalysisEngine key="ExtractionPrepAnnotator">
-                        <import location="../../../ctakes-clinical-pipeline/desc/analysis_engine/ExtractionPrepAnnotator.xml"/>
-                    </delegateAnalysisEngine>
                     <delegateAnalysisEngine key="LookupWindowAnnotator">
                         <import location="../../../ctakes-clinical-pipeline/desc/analysis_engine/LookupWindowAnnotator.xml"/>
                     </delegateAnalysisEngine>
@@ -208,7 +205,6 @@
                             <node>DictionaryLookupAnnotatorDB</node>
                             <node>StatusAnnotator</node>
                             <node>NegationAnnotator</node>
-                            <node>ExtractionPrepAnnotator</node>
                         </fixedFlow>
                     </flowConstraints>
                     <typePriorities>
@@ -239,21 +235,15 @@
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.TimeAnnotation</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.SymbolToken</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspan.Sentence</type>
-                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspanSegment</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.SBAR</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.RangeAnnotation</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.PunctuationToken</type>
-                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.Property</type>
-                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.Properties</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.PRT</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.PP</type>
-                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.OntologyConcept</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.NumToken</type>
-                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation</type>
-                                <type allAnnotatorFeatures="true">edu.mayo.bmi.uima.lookup.type.LookupWindowAnnotation</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.Lemma</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.LST</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.INTJ</type>
@@ -263,7 +253,6 @@
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.DateAnnotation</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.CopySrcAnnotation</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.CopyDestAnnotation</type>
-                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.ContractionToken</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.ContextAnnotation</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.Chunk</type>
                                 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.CONJP</type>

Modified: incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml?rev=1457952&r1=1457951&r2=1457952&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml
(original)
+++ incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml
Mon Mar 18 20:03:26 2013
@@ -1,24 +1,4 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!--
-
-    Licensed to the Apache Software Foundation (ASF) under one
-    or more contributor license agreements.  See the NOTICE file
-    distributed with this work for additional information
-    regarding copyright ownership.  The ASF licenses this file
-    to you under the Apache License, Version 2.0 (the
-    "License"); you may not use this file except in compliance
-    with the License.  You may obtain a copy of the License at
-
-      http://www.apache.org/licenses/LICENSE-2.0
-
-    Unless required by applicable law or agreed to in writing,
-    software distributed under the License is distributed on an
-    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    KIND, either express or implied.  See the License for the
-    specific language governing permissions and limitations
-    under the License.
-
--->
 <analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>
@@ -62,9 +42,6 @@
     <delegateAnalysisEngine key="DictionaryLookupAnnotatorDB">
       <import location="../../../ctakes-dictionary-lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml"/>
     </delegateAnalysisEngine>
-    <delegateAnalysisEngine key="ExtractionPrepAnnotator">
-      <import location="../../../ctakes-clinical-pipeline/desc/analysis_engine/ExtractionPrepAnnotator.xml"/>
-    </delegateAnalysisEngine>
     <delegateAnalysisEngine key="LookupWindowAnnotator">
       <import location="../../../ctakes-clinical-pipeline/desc/analysis_engine/LookupWindowAnnotator.xml"/>
     </delegateAnalysisEngine>
@@ -123,7 +100,6 @@
         <node>DictionaryLookupAnnotatorDB</node>
         <node>StatusAnnotator</node>
         <node>NegationAnnotator</node>
-        <node>ExtractionPrepAnnotator</node>
       </fixedFlow>
     </flowConstraints>
     <typePriorities>
@@ -154,21 +130,15 @@
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.TimeAnnotation</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.SymbolToken</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspan.Sentence</type>
-          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspanSegment</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.SBAR</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.RangeAnnotation</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.PunctuationToken</type>
-          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.Property</type>
-          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.Properties</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.PRT</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.PP</type>
-          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.OntologyConcept</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.NumToken</type>
-          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation</type>
-          <type allAnnotatorFeatures="true">edu.mayo.bmi.uima.lookup.type.LookupWindowAnnotation</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.Lemma</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.LST</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.INTJ</type>
@@ -178,7 +148,6 @@
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.DateAnnotation</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.CopySrcAnnotation</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.CopyDestAnnotation</type>
-          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.ContractionToken</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.ContextAnnotation</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.Chunk</type>
           <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.CONJP</type>



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