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From stevenbeth...@apache.org
Subject svn commit: r1456800 [2/5] - in /incubator/ctakes/trunk/ctakes-relation-extractor: desc/analysis_engine/ resources/models/ src/main/java/org/apache/ctakes/relationextractor/ae/ src/main/java/org/apache/ctakes/relationextractor/ae/features/ src/main/jav...
Date Fri, 15 Mar 2013 08:41:49 GMT
Modified: incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/EntityMentionPairRelationExtractorAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/EntityMentionPairRelationExtractorAnnotator.xml?rev=1456800&r1=1456799&r2=1456800&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/EntityMentionPairRelationExtractorAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/EntityMentionPairRelationExtractorAnnotator.xml Fri Mar 15 08:41:48 2013
@@ -1,30 +1,10 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!--
-
-    Licensed to the Apache Software Foundation (ASF) under one
-    or more contributor license agreements.  See the NOTICE file
-    distributed with this work for additional information
-    regarding copyright ownership.  The ASF licenses this file
-    to you under the Apache License, Version 2.0 (the
-    "License"); you may not use this file except in compliance
-    with the License.  You may obtain a copy of the License at
-
-      http://www.apache.org/licenses/LICENSE-2.0
-
-    Unless required by applicable law or agreed to in writing,
-    software distributed under the License is distributed on an
-    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    KIND, either express or implied.  See the License for the
-    specific language governing permissions and limitations
-    under the License.
-
--->
 <analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
     <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
     <primitive>true</primitive>
     <annotatorImplementationName>org.apache.ctakes.relationextractor.ae.EntityMentionPairRelationExtractorAnnotator</annotatorImplementationName>
     <analysisEngineMetaData>
-        <name>org.apache.ctakes.relationextractor.ae.EntityMentionPairRelationExtractorAnnotator</name>
+        <name>EntityMentionPairRelationExtractorAnnotator</name>
         <description>Descriptor automatically generated by uimaFIT</description>
         <version>unknown</version>
         <vendor>org.apache.ctakes.relationextractor.ae</vendor>
@@ -37,13 +17,6 @@
                 <mandatory>false</mandatory>
             </configurationParameter>
             <configurationParameter>
-                <name>GoldViewName</name>
-                <description>view containing the manual relation annotations; needed for training</description>
-                <type>String</type>
-                <multiValued>false</multiValued>
-                <mandatory>false</mandatory>
-            </configurationParameter>
-            <configurationParameter>
                 <name>ProbabilityOfKeepingANegativeExample</name>
                 <description>probability that a negative example should be retained for training</description>
                 <type>Float</type>
@@ -51,20 +24,6 @@
                 <mandatory>false</mandatory>
             </configurationParameter>
             <configurationParameter>
-                <name>PrintErrors</name>
-                <description>Print errors true/false</description>
-                <type>Boolean</type>
-                <multiValued>false</multiValued>
-                <mandatory>false</mandatory>
-            </configurationParameter>
-            <configurationParameter>
-                <name>ErrorOutputStream</name>
-                <description>If PARAM_PRINT_ERRORS is true, this indicates where to write files.  If unspecified, it will output to STDOUT.</description>
-                <type>String</type>
-                <multiValued>false</multiValued>
-                <mandatory>false</mandatory>
-            </configurationParameter>
-            <configurationParameter>
                 <name>org.cleartk.classifier.CleartkAnnotator.classifierFactoryClassName</name>
                 <description>provides the full name of the ClassifierFactory class to be used.</description>
                 <type>String</type>
@@ -94,12 +53,6 @@
         </configurationParameters>
         <configurationParameterSettings>
             <nameValuePair>
-                <name>PrintErrors</name>
-                <value>
-                    <boolean>false</boolean>
-                </value>
-            </nameValuePair>
-            <nameValuePair>
                 <name>org.cleartk.classifier.CleartkAnnotator.classifierFactoryClassName</name>
                 <value>
                     <string>org.cleartk.classifier.jar.JarClassifierFactory</string>
@@ -120,7 +73,7 @@
             <nameValuePair>
                 <name>org.cleartk.classifier.jar.GenericJarClassifierFactory.classifierJarPath</name>
                 <value>
-                    <string>resources/models/em_pair/model.jar</string>
+                    <string>/org/apache/ctakes/relationextractor/models/em_pair/model.jar</string>
                 </value>
             </nameValuePair>
             <nameValuePair>
@@ -133,50 +86,6 @@
         <typeSystemDescription>
             <types>
                 <typeDescription>
-                    <name>org.apache.ctakes.assertion.medfacts.types.Assertion</name>
-                    <description/>
-                    <supertypeName>uima.tcas.Annotation</supertypeName>
-                    <features>
-                        <featureDescription>
-                            <name>assertionType</name>
-                            <description>assertion type -- one of present, absent, possible, conditional, hypothetical, or assocated_with_someone_else</description>
-                            <rangeTypeName>uima.cas.String</rangeTypeName>
-                        </featureDescription>
-                        <featureDescription>
-                            <name>associatedConcept</name>
-                            <description/>
-                            <rangeTypeName>org.apache.ctakes.assertion.medfacts.types.Concept</rangeTypeName>
-                        </featureDescription>
-                    </features>
-                </typeDescription>
-                <typeDescription>
-                    <name>org.apache.ctakes.assertion.medfacts.types.Concept</name>
-                    <description/>
-                    <supertypeName>uima.tcas.Annotation</supertypeName>
-                    <features>
-                        <featureDescription>
-                            <name>conceptType</name>
-                            <description>the concept type -- one of problem, treatment, or test</description>
-                            <rangeTypeName>uima.cas.String</rangeTypeName>
-                        </featureDescription>
-                        <featureDescription>
-                            <name>conceptText</name>
-                            <description/>
-                            <rangeTypeName>uima.cas.String</rangeTypeName>
-                        </featureDescription>
-                        <featureDescription>
-                            <name>externalId</name>
-                            <description/>
-                            <rangeTypeName>uima.cas.Integer</rangeTypeName>
-                        </featureDescription>
-                        <featureDescription>
-                            <name>originalEntityExternalId</name>
-                            <description/>
-                            <rangeTypeName>uima.cas.Integer</rangeTypeName>
-                        </featureDescription>
-                    </features>
-                </typeDescription>
-                <typeDescription>
                     <name>org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree</name>
                     <description/>
                     <supertypeName>uima.tcas.Annotation</supertypeName>
@@ -391,6 +300,11 @@
                             <description/>
                             <rangeTypeName>uima.cas.Integer</rangeTypeName>
                         </featureDescription>
+                        <featureDescription>
+                            <name>historyOf</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                        </featureDescription>
                     </features>
                 </typeDescription>
                 <typeDescription>
@@ -685,7 +599,7 @@
                     <name>org.apache.ctakes.typesystem.type.refsem.OntologyConcept</name>
                     <description>Ontologies (e.g., SNOMED-CT) provide an expert semantic representation for concepts. They typically assign a code to a concept and normalize across various textual representations of that concept.  
 IdentifiedAnnotation and Elements may point to these normalized concept representations to indicate clinical concepts.
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.OntologyConcept</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.OntologyConcept</description>
                     <supertypeName>uima.cas.TOP</supertypeName>
                     <features>
                         <featureDescription>
@@ -879,7 +793,7 @@ More qualifying information on how the p
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.refsem.UmlsConcept</name>
                     <description>Concepts in the Unified Medical Language System (UMLS) Metathesaurus have a concept unique identifier (CUI) and a type unique identifier (TUI, i.e., semantic type) which are curated, normalized codes. For example, "pain" would have a cui=C0030193 and tui=T184.
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.UmlsConcept</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.UmlsConcept</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.refsem.OntologyConcept</supertypeName>
                     <features>
                         <featureDescription>
@@ -900,9 +814,31 @@ Equivalent to cTAKES: org.apache.ctakes.
                     <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.relation.AffectsTextRelation</name>
+                    <description/>
+                    <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.relation.AspectualTextRelation</name>
+                    <description>A UMLS relation between clinical elements.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.relation.AttributeRelation</name>
                     <description>A real-world relationship between an Element and an Attribute.</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.relation.Relation</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>arg1</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Element</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>arg2</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</rangeTypeName>
+                        </featureDescription>
+                    </features>
                 </typeDescription>
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</name>
@@ -935,6 +871,11 @@ Equivalent to cTAKES: org.apache.ctakes.
                     </features>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation</name>
+                    <description/>
+                    <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.relation.CoreferenceRelation</name>
                     <description>A coreference pair, with antecedent as arg1 and anaphor as arg2</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
@@ -945,9 +886,26 @@ Equivalent to cTAKES: org.apache.ctakes.
                     <supertypeName>org.apache.ctakes.typesystem.type.relation.AttributeRelation</supertypeName>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation</name>
+                    <description/>
+                    <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.relation.ElementRelation</name>
                     <description>A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.relation.Relation</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>arg1</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Element</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>arg2</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Element</rangeTypeName>
+                        </featureDescription>
+                    </features>
                 </typeDescription>
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.relation.LocationOf</name>
@@ -955,11 +913,26 @@ Equivalent to cTAKES: org.apache.ctakes.
                     <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation</name>
+                    <description/>
+                    <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation</name>
+                    <description/>
+                    <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.relation.ManifestationOf</name>
                     <description>A UMLS relation between clinical elements.</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation</name>
+                    <description/>
+                    <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.relation.Relation</name>
                     <description>A superclass for semantic relationships between Elements.  For example, one might consider TemporalRelations or UMLSRelations between a Medication and a Disorder.  The "category" feature indicates what kind of relation it is.</description>
                     <supertypeName>uima.cas.TOP</supertypeName>
@@ -1030,11 +1003,21 @@ Equivalent to cTAKES: org.apache.ctakes.
                     <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation</name>
+                    <description/>
+                    <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.relation.TemporalRelation</name>
                     <description>Based on ISO TimeML's TLINK.</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</name>
+                    <description>A UMLS relation between clinical elements.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.relation.UMLSRelation</name>
                     <description>A biomedical relationship between two spans of text that have been mapped to UMLS concepts. Inherits "category" from Relation, with values such as affects, causes, complicates, contraindicates, degree_of, etc.</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
@@ -1087,6 +1070,18 @@ Equivalent to cTAKES: org.apache.ctakes.
                     </features>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.structured.DocumentClassification</name>
+                    <description/>
+                    <supertypeName>uima.cas.TOP</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>label</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.String</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.structured.DocumentID</name>
                     <description>Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP</description>
                     <supertypeName>uima.cas.TOP</supertypeName>
@@ -1202,7 +1197,7 @@ Equivalent to cTAKES: edu.mayo.bmi.uima.
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.syntax.BaseToken</name>
                     <description>A supertype for tokens subsuming word, punctuation, symbol, newline, contraction, or number.  Includes parts of speech, which are grammatical categories, e.g., noun (NN) or preposition (IN) that use Penn Treebank tags with a few additions.
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.BaseToken</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.BaseToken</description>
                     <supertypeName>uima.tcas.Annotation</supertypeName>
                     <features>
                         <featureDescription>
@@ -1307,7 +1302,7 @@ Equivalent to cTAKES: edu.mayo.bmi.uima.
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.syntax.ContractionToken</name>
                     <description>Differentiates a token as being a contraction rather than a punctuation, symbol, newline, word, or number. 
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.ContractionToken</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.ContractionToken</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.syntax.BaseToken</supertypeName>
                 </typeDescription>
                 <typeDescription>
@@ -1325,7 +1320,7 @@ Equivalent to cTAKES: edu.mayo.bmi.uima.
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.syntax.Lemma</name>
                     <description>Stores a lemma (canonical form of a token).  Inherits from uima.cas.TOP, allowing for reuse of standardized forms across the CAS. 
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.Lemma</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.Lemma</description>
                     <supertypeName>uima.cas.TOP</supertypeName>
                     <features>
                         <featureDescription>
@@ -1349,13 +1344,13 @@ Equivalent to cTAKES: edu.mayo.bmi.uima.
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.syntax.NewlineToken</name>
                     <description>Differentiates a token as being a newline rather than a punctuation, symbol, contraction, word, or number. 
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.NewlineToken</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.NewlineToken</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.syntax.BaseToken</supertypeName>
                 </typeDescription>
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.syntax.NumToken</name>
                     <description>Differentiates a token as being a number rather than a punctuation, symbol, newline, word, or contraction. 
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.NumToken</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.NumToken</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.syntax.BaseToken</supertypeName>
                     <features>
                         <featureDescription>
@@ -1385,7 +1380,7 @@ Equivalent to cTAKES: edu.mayo.bmi.uima.
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.syntax.PunctuationToken</name>
                     <description>Differentiates a token as being punctuation rather than a contraction, symbol, newline, word, or number. 
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.PunctuationToken</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.PunctuationToken</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.syntax.BaseToken</supertypeName>
                 </typeDescription>
                 <typeDescription>
@@ -1402,7 +1397,7 @@ Equivalent to cTAKES: edu.mayo.bmi.uima.
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.syntax.SymbolToken</name>
                     <description>Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number. 
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.SymbolToken</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.SymbolToken</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.syntax.BaseToken</supertypeName>
                 </typeDescription>
                 <typeDescription>
@@ -1498,7 +1493,7 @@ Equivalent to cTAKES: edu.mayo.bmi.uima.
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.syntax.WordToken</name>
                     <description>Differentiates a token as being a word rather than a punctuation, symbol, newline, contraction, or number.
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.WordToken</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.WordToken</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.syntax.BaseToken</supertypeName>
                     <features>
                         <featureDescription>
@@ -1524,6 +1519,77 @@ Equivalent to cTAKES: org.apache.ctakes.
                     </features>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation</name>
+                    <description>A cue phrase indicating potential negation, uncertainty, or conditional</description>
+                    <supertypeName>uima.tcas.Annotation</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>id</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>cuePhraseCategory</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.String</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>cuePhraseAssertionFamily</name>
+                            <description>which assertion family this cue phrase belongs to (negation, uncertainty, or conditional)</description>
+                            <rangeTypeName>uima.cas.String</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>cuePhraseFirstWord</name>
+                            <description>first word of cue phrase</description>
+                            <rangeTypeName>uima.cas.String</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>cuePhrase</name>
+                            <description>cue phrase itself (from lookup list)</description>
+                            <rangeTypeName>uima.cas.String</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention</name>
+                    <description>A text string that refers to a (AnatomicalSite) Entity.  A body part or area, corresponding to the UMLS semantic group of Anatomy.  Based on generic Clinical Element Models (CEMs)</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.EntityMention</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>bodyLaterality</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>bodySide</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.BodySideModifier</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier</name>
+                    <description>The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.). This is finer-grained to allow combinations of values.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.BodySideModifier</name>
+                    <description>Value set: unmarked (default), left, right, bilateral</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.ConditionalModifier</name>
+                    <description>The Conditional modifier refers to mentions which could exist under certain circumstances.  If indicated, there are conditions under which an associated Named Entity mention might not be truly asserted.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>indicated</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.textsem.ContextAnnotation</name>
                     <description>Contextual information of an entity. Equivalent to cTAKES: edu.mayo.bmi.uima.context.type.ContextAnnotation</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</supertypeName>
@@ -1541,11 +1607,83 @@ Equivalent to cTAKES: org.apache.ctakes.
                     </features>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.CourseModifier</name>
+                    <description>An indication of progress or decline of a condition.  Value set: unmarked (default), changed, increased, decreased, improved, worsened, resolved</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.textsem.DateAnnotation</name>
                     <description>Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</supertypeName>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention</name>
+                    <description>A text string that refers to a (DiseaseDisorder) Event.  This is from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).  Based on generic Clinical Element Models (CEMs)</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.EventMention</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>alleviatingFactor</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>associatedSignSymptom</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>bodyLaterality</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>bodySide</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.BodySideModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>bodyLocation</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>course</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>duration</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>endTime</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.TimeMention</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>exacerbatingFactor</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>startTime</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.TimeMention</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>relativeTemporalContext</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>severity</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.textsem.EntityMention</name>
                     <description>A text string (IdentifiedAnnotation) that refers to an Entity.</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</supertypeName>
@@ -1575,6 +1713,30 @@ Equivalent to cTAKES: org.apache.ctakes.
                     <supertypeName>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</supertypeName>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.GenericModifier</name>
+                    <description>The Generic modifier indicates that a named entity mention is generic, i.e., not related to the instance of a disorder, sign/symptom, etc.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>indicated</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier</name>
+                    <description>An indication of explicit mentioning of a past history. The indicator captures only very explicit mentions of historicity.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>indicated</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</name>
                     <description>Any span of text that has been discovered or flagged for some reason, such as a Named Entity.  Allows for mapping to an ontology.  Generalized from cTAKES: org.apache.ctakes.typesystem.type.IdentifiedAnnotation.</description>
                     <supertypeName>uima.tcas.Annotation</supertypeName>
@@ -1640,16 +1802,114 @@ Equivalent to cTAKES: org.apache.ctakes.
                             <description/>
                             <rangeTypeName>uima.cas.String</rangeTypeName>
                         </featureDescription>
+                        <featureDescription>
+                            <name>historyOf</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.Integer</rangeTypeName>
+                        </featureDescription>
                     </features>
                 </typeDescription>
                 <typeDescription>
-                    <name>org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation</name>
-                    <description>Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation</description>
-                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</supertypeName>
+                    <name>org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier</name>
+                    <description>An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
                 </typeDescription>
                 <typeDescription>
-                    <name>org.apache.ctakes.typesystem.type.textsem.MedicationEventMention</name>
-                    <description>A text string (EventMention and therefore IdentifiedAnnotation) that refers to a (Medication) Event.</description>
+                    <name>org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier</name>
+                    <description>Signals that the lab value was estimated, e.g., "GFR (estimated): 81".  True means that there is an indicator signalling that there was an estimation of the value.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>indicated</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier</name>
+                    <description>Test result interpretations organized in a valued list e.g., "rare cells seen" or "few cells seen" in urinalysis, now combined with very_abnormal and abnormal.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>value</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.String</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.LabMention</name>
+                    <description>A text string that refers to a (Lab) Event.  This is from the UMLS semantic group of Laboratory Procedures.  Based on generic Clinical Element Models (CEMs)</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.EventMention</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>abnormalInterpretation</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>deltaFlag</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>labValue</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>ordinalInterpretation</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>referenceRangeNarrative</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier</name>
+                    <description>Holds a narrative (i.e. string) reference range</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.LabValueModifier</name>
+                    <description>Quantitative results of a laboratory, with number and unit.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation</name>
+                    <description>Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier</name>
+                    <description>Indication of whether the medication is mentioned in the context of Allergies.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>indicated</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier</name>
+                    <description>Dosage indicates how much of a prescribed drug should be taken.  E.g. "one" in "one 5 mg tablet twice-a-day for 2 weeks"</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier</name>
+                    <description>The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.MedicationEventMention</name>
+                    <description>A text string (EventMention and therefore IdentifiedAnnotation) that refers to a (Medication) Event.</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.textsem.EventMention</supertypeName>
                     <features>
                         <featureDescription>
@@ -1700,6 +1960,93 @@ Equivalent to cTAKES: org.apache.ctakes.
                     </features>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier</name>
+                    <description>Form of this medication.  Value set includes tablet, capsule, liquid, inhalant, gel, other, etc.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier</name>
+                    <description>How often a medication should be used. e.g., BID or b.i.d. or "twice-a-day" would have a number=2 and unit=day.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.MedicationMention</name>
+                    <description>A text string that refers to a (Medication) Event.  This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source.  Based on generic Clinical Element Models (CEMs)</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.EventMention</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>medicationAllergy</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>medicationFrequency</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>medicationDuration</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>medicationRoute</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>medicationStatusChange</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>medicationDosage</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>medicationStrength</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>medicationForm</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>startDate</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.TimeMention</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>endDate</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.TimeMention</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>relativeTemporalContext</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier</name>
+                    <description>Means by which the medication was taken or administered.  Value set includes Topical, Enteral_Oral, Parenteral_Intravenous, Other, undetermined, etc.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier</name>
+                    <description>Status refers to the whether the medication is currently being taken or not.  Value set: start, stop, increase, decrease, no change.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier</name>
+                    <description>Strength indicates the strength number and unit of the prescribed drug.  E.g. "5 mg" in "one 5 mg tablet twice-a-day for 2 weeks"</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.textsem.Modifier</name>
                     <description>A text string (IdentifiedAnnotation) that refers to an Attribute.</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</supertypeName>
@@ -1709,6 +2056,11 @@ Equivalent to cTAKES: org.apache.ctakes.
                             <description/>
                             <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</rangeTypeName>
                         </featureDescription>
+                        <featureDescription>
+                            <name>category</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.String</rangeTypeName>
+                        </featureDescription>
                     </features>
                 </typeDescription>
                 <typeDescription>
@@ -1717,6 +2069,18 @@ Equivalent to cTAKES: org.apache.ctakes.
                     <supertypeName>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</supertypeName>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.PolarityModifier</name>
+                    <description>Used to indicate that a procedure or assertion did not occur or does not exist. If indicated, negation is present and polarity should be -1.  If not indicated, negation is not present and polarity should be +1 by default.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>indicated</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.textsem.Predicate</name>
                     <description>Predicates are typically verbs and may participate in SemanticRoleRelations.  Follows PropBank standards with a few clinical additions.</description>
                     <supertypeName>uima.tcas.Annotation</supertypeName>
@@ -1735,6 +2099,70 @@ Equivalent to cTAKES: org.apache.ctakes.
                     </features>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier</name>
+                    <description>Corresponds to the UMLS Devices semantic group: medical device and research device. 
+Example: arterial line has a Medical Device semantic type. This is qualifying information on how a procedure was done.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.ProcedureMention</name>
+                    <description>A text string that refers to a (Procedure) Event.  This is from the UMLS semantic group of Procedures (except that Laboratory procedures are separate).  Based on generic Clinical Element Models (CEMs)</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.EventMention</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>bodyLaterality</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>bodySide</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.BodySideModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>bodyLocation</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>procedureDevice</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>duration</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>endTime</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.TimeMention</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>method</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>startTime</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.TimeMention</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>relativeTemporalContext</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier</name>
+                    <description>The way or the equipment used to give or administration something (medication, test). This corresponds to the Procedures UMLS semantic group.
+More qualifying information on how the procedure was done.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.textsem.RangeAnnotation</name>
                     <description>Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.RangeAnnotation</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</supertypeName>
@@ -1779,6 +2207,85 @@ Equivalent to cTAKES: org.apache.ctakes.
                     </features>
                 </typeDescription>
                 <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.SeverityModifier</name>
+                    <description>An explicitly-mentioned indication of the seriousness of a condition.  Value Set: unmarked (default), severe, moderate, slight</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.SignSymptomMention</name>
+                    <description>A text string that refers to a (SignSymptom) Event.  This is from the UMLS semantic group of Sign or Symtom.  Based on generic Clinical Element Models (CEMs)</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.EventMention</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>alleviatingFactor</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>bodyLaterality</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>bodySide</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.BodySideModifier</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>bodyLocation</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>course</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>duration</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>endTime</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.TimeMention</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>exacerbatingFactor</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>severity</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>startTime</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.TimeMention</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
+                            <name>relativeTemporalContext</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.SubjectModifier</name>
+                    <description>The person the observation is on, i.e., a Person mention. This modifier refers to the entity experiencing the disorder.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>value</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.String</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.textsem.TimeAnnotation</name>
                     <description>Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.TimeAnnotation</description>
                     <supertypeName>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</supertypeName>
@@ -1789,10 +2296,32 @@ Equivalent to cTAKES: org.apache.ctakes.
                     <supertypeName>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</supertypeName>
                     <features>
                         <featureDescription>
+                            <name>date</name>
+                            <description/>
+                            <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Date</rangeTypeName>
+                        </featureDescription>
+                        <featureDescription>
                             <name>time</name>
                             <description/>
                             <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
                         </featureDescription>
+                        <featureDescription>
+                            <name>timeClass</name>
+                            <description>DATE, DURATION, QUANTIFIER, PREPOSTEXP, etc.</description>
+                            <rangeTypeName>uima.cas.String</rangeTypeName>
+                        </featureDescription>
+                    </features>
+                </typeDescription>
+                <typeDescription>
+                    <name>org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier</name>
+                    <description>An introduction of a measure of doubt into a statement.  If indicated, there is uncertainty.</description>
+                    <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+                    <features>
+                        <featureDescription>
+                            <name>indicated</name>
+                            <description/>
+                            <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+                        </featureDescription>
                     </features>
                 </typeDescription>
                 <typeDescription>
@@ -1827,7 +2356,7 @@ Equivalent to cTAKES: edu.mayo.bmi.uima.
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.textspan.Segment</name>
                     <description>A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.  Different segments often have differing sublanguages and clinical relevance.     
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.Segment</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.Segment</description>
                     <supertypeName>uima.tcas.Annotation</supertypeName>
                     <features>
                         <featureDescription>
@@ -1840,7 +2369,7 @@ Equivalent to cTAKES: org.apache.ctakes.
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.textspan.Sentence</name>
                     <description>Sentences may or may not be fully-formed and grammatical.  They form the unit of analysis for some downstream components (e.g., constituency parsers).
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.Sentence</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.Sentence</description>
                     <supertypeName>uima.tcas.Annotation</supertypeName>
                     <features>
                         <featureDescription>
@@ -1858,7 +2387,7 @@ Equivalent to cTAKES: org.apache.ctakes.
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.util.Pair</name>
                     <description>An Attribute-Value tuple.
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.Property</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.Property</description>
                     <supertypeName>uima.cas.TOP</supertypeName>
                     <features>
                         <featureDescription>
@@ -1876,7 +2405,7 @@ Equivalent to cTAKES: org.apache.ctakes.
                 <typeDescription>
                     <name>org.apache.ctakes.typesystem.type.util.Pairs</name>
                     <description>A brute force "hash" that stores multiple Pairs in a list. 
-Equivalent to cTAKES: org.apache.ctakes.typesystem.type.Properties</description>
+Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.Properties</description>
                     <supertypeName>uima.cas.TOP</supertypeName>
                     <features>
                         <featureDescription>



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