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From chen...@apache.org
Subject svn commit: r1455253 [21/25] - in /incubator/ctakes/trunk/ctakes-regression-test: src/test/java/org/apache/ctakes/regression/test/ testdata/expectedoutput/CoreferenceCPETest/ testdata/expectedoutput/RegressionPipelineCPETest/
Date Mon, 11 Mar 2013 17:42:34 GMT
Modified: incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml?rev=1455253&r1=1455252&r2=1455253&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml (original)
+++ incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml Mon Mar 11 17:42:33 2013
@@ -1,416 +1,416 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<CAS version="2">
-    <uima.cas.Sofa _indexed="0" _id="3" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString="S/P right knee arthroscopy.&#10;Knee x-ray.  Patient denies knee pain.&#10;"/>
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-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="340" key="rightest" posTag="JJ"/>
-    <uima.cas.EmptyFSList _id="339"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="306" key="Ping" posTag="VB"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="303" key="Pest" posTag="RB"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="300" key="Pest" posTag="JJ"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="297" key="P" posTag="NN"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="294" key="P" posTag="RB"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="291" key="P" posTag="JJ"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="288" key="P" posTag="VB"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="285" key="Ped" posTag="VB"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="282" key="Per" posTag="RB"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="279" key="Per" posTag="JJ"/>
-    <uima.cas.EmptyFSList _id="278"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="245" key="Sed" posTag="VB"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="242" key="Sest" posTag="RB"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="239" key="Sest" posTag="JJ"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="236" key="Ser" posTag="RB"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="233" key="Ser" posTag="JJ"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="230" key="S" posTag="NN"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="227" key="S" posTag="RB"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="224" key="S" posTag="JJ"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="221" key="S" posTag="VB"/>
-    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="218" key="Sing" posTag="VB"/>
-</CAS>
+<?xml version="1.0" encoding="UTF-8"?>
+<CAS version="2">
+    <uima.cas.Sofa _indexed="0" _id="3" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString="S/P right knee arthroscopy.&#10;Knee x-ray.  Patient denies knee pain.&#10;"/>
+    <org.apache.ctakes.typesystem.type.structured.DocumentID _indexed="1" _id="1" documentID="sample_note_plaintext"/>
+    <uima.tcas.DocumentAnnotation _indexed="1" _id="10" _ref_sofa="3" begin="0" end="67" language="x-unspecified"/>
+    <org.apache.ctakes.typesystem.type.textspan.Segment _indexed="1" _id="15" _ref_sofa="3" begin="0" end="67" id="SIMPLE_SEGMENT"/>
+    <org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1" _id="20" _ref_sofa="3" begin="0" end="27" sentenceNumber="0"/>
+    <org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1" _id="26" _ref_sofa="3" begin="28" end="39" sentenceNumber="1"/>
+    <org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1" _id="32" _ref_sofa="3" begin="41" end="66" sentenceNumber="2"/>
+    <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="38" _ref_sofa="3" begin="27" end="28" tokenNumber="7" normalizedForm="&#10;"/>
+    <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="46" _ref_sofa="3" begin="66" end="67" tokenNumber="16" normalizedForm="&#10;"/>
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+    <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="198" _ref_sofa="3" begin="61" end="65" tokenNumber="14" normalizedForm="pain" partOfSpeech="NN" _ref_lemmaEntries="1236" capitalization="0" numPosition="0" canonicalForm="pain"/>
+    <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="66" _ref_sofa="3" begin="1" end="2" tokenNumber="1" normalizedForm="/" partOfSpeech="HYPH"/>
+    <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="122" _ref_sofa="3" begin="26" end="27" tokenNumber="6" normalizedForm="." partOfSpeech="."/>
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+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="1212" key="painest" posTag="RB"/>
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+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="1000" key="denies" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="997" key="denying" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="994" key="denieser" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="991" key="denieser" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="988" key="deniing" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="985" key="denieses" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="982" key="denieses" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="979" key="deny" posTag="NN"/>
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+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="973" key="deniesing" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="970" key="denieing" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="967" key="deniesest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="964" key="deniesest" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="961" key="denyed" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="958" key="denieed" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="955" key="deniess" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="952" key="deniess" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="949" key="denys" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="946" key="denys" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="943" key="denied" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="940" key="deniesed" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="937" key="denie" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="934" key="denie" posTag="VB"/>
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+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="891" key="Patienter" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="888" key="Patients" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="885" key="Patients" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="882" key="Patiented" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="879" key="Patient" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="876" key="Patient" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="873" key="Patient" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="870" key="Patient" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="867" key="Patientest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="864" key="Patientest" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="861" key="Patienting" posTag="VB"/>
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+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="800" key="x-raid" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="797" key="x-rayest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="794" key="x-rayest" posTag="JJ"/>
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+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="779" key="x-rayyest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="776" key="x-rayyest" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="773" key="x-raying" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="770" key="x-rayying" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="767" key="x-rayyer" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="764" key="x-rayyer" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="761" key="x-rayer" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="758" key="x-rayer" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="755" key="x-rayed" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="752" key="x-rayyed" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="749" key="x-rays" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="746" key="x-rays" posTag="VB"/>
+    <uima.cas.EmptyFSList _id="745"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="688" key="Kneeed" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="685" key="Knee" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="682" key="Knee" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="679" key="Knee" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="676" key="Knee" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="673" key="Kneing" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="670" key="Kneeer" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="667" key="Kneeer" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="664" key="Kneeest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="661" key="Kneeest" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="658" key="Kneest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="655" key="Kneest" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="652" key="Knees" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="649" key="Knees" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="646" key="Kneed" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="643" key="Kneeing" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="640" key="Kneer" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="637" key="Kneer" posTag="JJ"/>
+    <uima.cas.EmptyFSList _id="636"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="576" key="arthroscopying" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="573" key="arthroscopier" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="570" key="arthroscopier" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="567" key="arthroscopiest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="564" key="arthroscopiest" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="561" key="arthroscopies" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="558" key="arthroscopies" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="555" key="arthroscopied" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="552" key="arthroscopys" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="549" key="arthroscopys" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="546" key="arthroscopyed" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="543" key="arthroscopy" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="540" key="arthroscopy" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="537" key="arthroscopy" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="534" key="arthroscopy" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="531" key="arthroscopyer" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="528" key="arthroscopyer" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="525" key="arthroscopyest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="522" key="arthroscopyest" posTag="JJ"/>
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+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="461" key="knee" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="458" key="knee" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="455" key="knee" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="452" key="kneest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="449" key="kneest" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="446" key="knees" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="443" key="knees" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="440" key="kneed" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="437" key="kneeest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="434" key="kneeest" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="431" key="kneer" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="428" key="kneer" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="425" key="kneeing" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="422" key="kneing" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="419" key="kneeed" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="416" key="kneeer" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="413" key="kneeer" posTag="JJ"/>
+    <uima.cas.EmptyFSList _id="412"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="373" key="right" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="370" key="right" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="367" key="right" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="364" key="right" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="361" key="righted" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="358" key="rights" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="355" key="rights" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="352" key="righter" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="349" key="righter" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="346" key="righting" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="343" key="rightest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="340" key="rightest" posTag="JJ"/>
+    <uima.cas.EmptyFSList _id="339"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="306" key="Ping" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="303" key="Pest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="300" key="Pest" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="297" key="P" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="294" key="P" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="291" key="P" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="288" key="P" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="285" key="Ped" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="282" key="Per" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="279" key="Per" posTag="JJ"/>
+    <uima.cas.EmptyFSList _id="278"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="245" key="Sed" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="242" key="Sest" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="239" key="Sest" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="236" key="Ser" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="233" key="Ser" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="230" key="S" posTag="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="227" key="S" posTag="RB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="224" key="S" posTag="JJ"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="221" key="S" posTag="VB"/>
+    <org.apache.ctakes.typesystem.type.syntax.Lemma _id="218" key="Sing" posTag="VB"/>
+</CAS>



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