ctakes-commits mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From chen...@apache.org
Subject svn commit: r1454525 [18/19] - in /incubator/ctakes/trunk/ctakes-regression-test: ./ desc/collection_processing_engine/ src/test/java/org/apache/ctakes/regression/test/ testdata/expectedoutput/CoreferenceCPETest/ testdata/expectedoutput/RegressionPipel...
Date Fri, 08 Mar 2013 20:13:01 GMT
Modified: incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc2_07543210_sample_past_smoker.txt.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc2_07543210_sample_past_smoker.txt.xml?rev=1454525&r1=1454524&r2=1454525&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc2_07543210_sample_past_smoker.txt.xml (original)
+++ incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc2_07543210_sample_past_smoker.txt.xml Fri Mar  8 20:13:00 2013
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <CAS version="2">
-    <uima.cas.Sofa _indexed="0" _id="3" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString="Patient Centered Medicine 2&#13;&#10;Revised: 2/7/10&#13;&#10;DATA BASE: SAMPLE HISTORY&#13;&#10;IDENTIFYING DATA &#13;&#10;CM is a 45-year-old, widowed, white saleswoman, born in the U.S.&#13;&#10;CHIEF COMPLAINT&#13;&#10;�Insomnia�&#13;&#10;HISTORY OF PRESENT ILLNESS &#13;&#10;She is also concerned that they make her irritable with her family.  She isn't sleeping well, since she quit smoking cigs.&#13;&#10;PAST MEDICAL HISTORY&#13;&#10;Significant Childhood Illnesses&#13;&#10;Only measles and chickenpox&#13;&#10;Immunizations&#13;&#10;Last tetanus 1998&#13;&#10;Flu vaccine last November&#13;&#10;Adult Illnesses/Hospitalizations&#13;&#10;- Kidney infection 1982 treated with ampicillin and developed a generalized rash.&#13;&#10;- Hypertension x 7 years, well controlled with home BPs normally 120-130/low 80s&#13;&#10;Patient Centered Medicine 2&#13;&#10;Psychiatric 
 Illnesses/Hospitalizations&#13;&#10;None&#13;&#10;Operations&#13;&#10;Tonsillectomy, age 6,&#13;&#10;Appendectomy, age 13&#13;&#10;Habits&#13;&#10;tobacco : quit.&#13;&#10;Injuries/Accidents&#13;&#10;1998 foot laceration, 4 stitches&#13;&#10;Obstetric History&#13;&#10;G3, P3, 3 living children. Menarche age 12. Last menses 2 weeks ago.&#13;&#10;Transfusions&#13;&#10;None&#13;&#10;"/>
+    <uima.cas.Sofa _indexed="0" _id="3" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString="Patient Centered Medicine 2&#13;&#10;Revised: 2/7/10&#13;&#10;DATA BASE: SAMPLE HISTORY&#13;&#10;IDENTIFYING DATA &#13;&#10;CM is a 45-year-old, widowed, white saleswoman, born in the U.S.&#13;&#10;CHIEF COMPLAINT&#13;&#10;“Insomnia”&#13;&#10;HISTORY OF PRESENT ILLNESS &#13;&#10;She is also concerned that they make her irritable with her family.  She isn't sleeping well, since she quit smoking cigs.&#13;&#10;PAST MEDICAL HISTORY&#13;&#10;Significant Childhood Illnesses&#13;&#10;Only measles and chickenpox&#13;&#10;Immunizations&#13;&#10;Last tetanus 1998&#13;&#10;Flu vaccine last November&#13;&#10;Adult Illnesses/Hospitalizations&#13;&#10;- Kidney infection 1982 treated with ampicillin and developed a generalized rash.&#13;&#10;- Hypertension x 7 years, well controlled with home BPs normally 120-130/low 80s&#13;&#10;Patient Centered Medicine 2&#13;&#10;Psychiatric 
 Illnesses/Hospitalizations&#13;&#10;None&#13;&#10;Operations&#13;&#10;Tonsillectomy, age 6,&#13;&#10;Appendectomy, age 13&#13;&#10;Habits&#13;&#10;tobacco : quit.&#13;&#10;Injuries/Accidents&#13;&#10;1998 foot laceration, 4 stitches&#13;&#10;Obstetric History&#13;&#10;G3, P3, 3 living children. Menarche age 12. Last menses 2 weeks ago.&#13;&#10;Transfusions&#13;&#10;None&#13;&#10;"/>
     <org.apache.ctakes.typesystem.type.structured.DocumentID _indexed="1" _id="1" documentID="doc2_07543210_sample_past_smoker.txt"/>
     <uima.tcas.DocumentAnnotation _indexed="1" _id="10" _ref_sofa="3" begin="0" end="1004" language="x-unspecified"/>
     <org.apache.ctakes.typesystem.type.textspan.Segment _indexed="1" _id="15" _ref_sofa="3" begin="0" end="1004" id="SIMPLE_SEGMENT"/>
@@ -249,8 +249,8 @@
     <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="2318" _ref_sofa="3" begin="939" end="940" tokenNumber="197" normalizedForm="." partOfSpeech="."/>
     <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="2359" _ref_sofa="3" begin="956" end="957" tokenNumber="201" normalizedForm="." partOfSpeech="."/>
     <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="2424" _ref_sofa="3" begin="981" end="982" tokenNumber="207" normalizedForm="." partOfSpeech="."/>
-    <org.apache.ctakes.typesystem.type.syntax.SymbolToken _indexed="1" _id="919" _ref_sofa="3" begin="175" end="176" tokenNumber="47" normalizedForm="�" partOfSpeech="NN"/>
-    <org.apache.ctakes.typesystem.type.syntax.SymbolToken _indexed="1" _id="939" _ref_sofa="3" begin="184" end="185" tokenNumber="49" normalizedForm="�" partOfSpeech="CD"/>
+    <org.apache.ctakes.typesystem.type.syntax.SymbolToken _indexed="1" _id="919" _ref_sofa="3" begin="175" end="176" tokenNumber="47" normalizedForm="“" partOfSpeech="NN"/>
+    <org.apache.ctakes.typesystem.type.syntax.SymbolToken _indexed="1" _id="939" _ref_sofa="3" begin="184" end="185" tokenNumber="49" normalizedForm="”" partOfSpeech="CD"/>
     <org.apache.ctakes.typesystem.type.syntax.ContractionToken _indexed="1" _id="1171" _ref_sofa="3" begin="291" end="294" tokenNumber="71" normalizedForm="n't" partOfSpeech="RB"/>
     <uima.cas.NonEmptyFSList _indexed="1" _id="2492" _ref_head="2456" _ref_tail="2495"/>
     <uima.cas.NonEmptyFSList _indexed="1" _id="2495" _ref_head="2459" _ref_tail="2498"/>
@@ -2348,163 +2348,163 @@
     <uima.cas.NonEmptyFSList _indexed="1" _id="15141" _ref_head="15087" _ref_tail="15144"/>
     <uima.cas.NonEmptyFSList _indexed="1" _id="15144" _ref_head="15090" _ref_tail="15147"/>
     <uima.cas.NonEmptyFSList _indexed="1" _id="15147" _ref_head="15093" _ref_tail="15150"/>
-    <org.apache.ctakes.typesystem.type.textsem.DateAnnotation _indexed="1" _id="15151" _ref_sofa="3" begin="38" end="44" id="0" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.FractionAnnotation _indexed="1" _id="15167" _ref_sofa="3" begin="38" end="41" id="1" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation _indexed="1" _id="15183" _ref_sofa="3" begin="92" end="94" id="2" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation _indexed="1" _id="15199" _ref_sofa="3" begin="617" end="618" id="3" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.RangeAnnotation _indexed="1" _id="15215" _ref_sofa="3" begin="667" end="674" id="4" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="15231" _ref_sofa="3" begin="861" end="870" id="5" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15247" _ref_sofa="3" begin="0" end="27" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15252" _ref_sofa="3" begin="26" end="27" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15267" _ref_sofa="3" begin="38" end="44" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15272" _ref_sofa="3" begin="46" end="55" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15282" _ref_sofa="3" begin="57" end="71" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15287" _ref_sofa="3" begin="73" end="89" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15292" _ref_sofa="3" begin="92" end="94" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15307" _ref_sofa="3" begin="100" end="138" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15312" _ref_sofa="3" begin="107" end="138" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15327" _ref_sofa="3" begin="148" end="155" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15332" _ref_sofa="3" begin="158" end="173" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15337" _ref_sofa="3" begin="175" end="185" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15342" _ref_sofa="3" begin="184" end="185" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15347" _ref_sofa="3" begin="187" end="213" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15357" _ref_sofa="3" begin="198" end="213" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15362" _ref_sofa="3" begin="216" end="219" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15387" _ref_sofa="3" begin="243" end="247" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15397" _ref_sofa="3" begin="253" end="282" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15407" _ref_sofa="3" begin="272" end="282" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15412" _ref_sofa="3" begin="285" end="288" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15437" _ref_sofa="3" begin="316" end="319" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15447" _ref_sofa="3" begin="333" end="337" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15452" _ref_sofa="3" begin="340" end="360" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15457" _ref_sofa="3" begin="362" end="393" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15462" _ref_sofa="3" begin="395" end="407" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15472" _ref_sofa="3" begin="412" end="422" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15477" _ref_sofa="3" begin="424" end="437" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15482" _ref_sofa="3" begin="439" end="456" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15487" _ref_sofa="3" begin="452" end="456" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15492" _ref_sofa="3" begin="458" end="483" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15497" _ref_sofa="3" begin="470" end="483" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15502" _ref_sofa="3" begin="485" end="500" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15512" _ref_sofa="3" begin="501" end="517" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15527" _ref_sofa="3" begin="528" end="542" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15542" _ref_sofa="3" begin="556" end="566" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15557" _ref_sofa="3" begin="581" end="599" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15577" _ref_sofa="3" begin="619" end="627" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15582" _ref_sofa="3" begin="626" end="627" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15597" _ref_sofa="3" begin="649" end="657" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15607" _ref_sofa="3" begin="667" end="682" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15612" _ref_sofa="3" begin="684" end="711" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15617" _ref_sofa="3" begin="710" end="711" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15622" _ref_sofa="3" begin="713" end="734" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15632" _ref_sofa="3" begin="735" end="751" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15637" _ref_sofa="3" begin="753" end="757" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15642" _ref_sofa="3" begin="759" end="769" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15647" _ref_sofa="3" begin="771" end="791" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15652" _ref_sofa="3" begin="784" end="791" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15657" _ref_sofa="3" begin="794" end="814" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15662" _ref_sofa="3" begin="808" end="814" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15667" _ref_sofa="3" begin="816" end="822" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15672" _ref_sofa="3" begin="824" end="831" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15687" _ref_sofa="3" begin="841" end="859" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15692" _ref_sofa="3" begin="861" end="881" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15702" _ref_sofa="3" begin="883" end="893" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15707" _ref_sofa="3" begin="895" end="912" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15712" _ref_sofa="3" begin="914" end="939" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15717" _ref_sofa="3" begin="941" end="956" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15722" _ref_sofa="3" begin="950" end="956" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15727" _ref_sofa="3" begin="958" end="977" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15732" _ref_sofa="3" begin="970" end="977" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15742" _ref_sofa="3" begin="984" end="996" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15747" _ref_sofa="3" begin="998" end="1002" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15257" _ref_sofa="3" begin="29" end="36" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15297" _ref_sofa="3" begin="95" end="97" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15317" _ref_sofa="3" begin="138" end="144" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15367" _ref_sofa="3" begin="220" end="222" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15392" _ref_sofa="3" begin="248" end="252" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15417" _ref_sofa="3" begin="289" end="303" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15442" _ref_sofa="3" begin="320" end="332" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15532" _ref_sofa="3" begin="543" end="550" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15552" _ref_sofa="3" begin="571" end="580" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15587" _ref_sofa="3" begin="628" end="643" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15682" _ref_sofa="3" begin="834" end="838" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15262" _ref_sofa="3" begin="36" end="37" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15277" _ref_sofa="3" begin="55" end="56" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15302" _ref_sofa="3" begin="98" end="99" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15427" _ref_sofa="3" begin="308" end="309" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15467" _ref_sofa="3" begin="408" end="411" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15507" _ref_sofa="3" begin="500" end="501" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15517" _ref_sofa="3" begin="519" end="520" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15522" _ref_sofa="3" begin="521" end="527" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15547" _ref_sofa="3" begin="567" end="570" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15562" _ref_sofa="3" begin="602" end="603" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15567" _ref_sofa="3" begin="604" end="616" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15572" _ref_sofa="3" begin="617" end="618" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15627" _ref_sofa="3" begin="734" end="735" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15677" _ref_sofa="3" begin="832" end="833" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15697" _ref_sofa="3" begin="881" end="882" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="15322" _ref_sofa="3" begin="145" end="147" chunkType="PP"/>
-    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="15352" _ref_sofa="3" begin="195" end="197" chunkType="PP"/>
-    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="15402" _ref_sofa="3" begin="267" end="271" chunkType="PP"/>
-    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="15537" _ref_sofa="3" begin="551" end="555" chunkType="PP"/>
-    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="15592" _ref_sofa="3" begin="644" end="648" chunkType="PP"/>
-    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="15372" _ref_sofa="3" begin="223" end="227" chunkType="ADVP"/>
-    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="15422" _ref_sofa="3" begin="304" end="308" chunkType="ADVP"/>
-    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="15602" _ref_sofa="3" begin="658" end="666" chunkType="ADVP"/>
-    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="15737" _ref_sofa="3" begin="978" end="981" chunkType="ADVP"/>
-    <org.apache.ctakes.typesystem.type.syntax.ADJP _indexed="1" _id="15377" _ref_sofa="3" begin="228" end="237" chunkType="ADJP"/>
-    <org.apache.ctakes.typesystem.type.syntax.SBAR _indexed="1" _id="15382" _ref_sofa="3" begin="238" end="242" chunkType="SBAR"/>
-    <org.apache.ctakes.typesystem.type.syntax.SBAR _indexed="1" _id="15432" _ref_sofa="3" begin="310" end="315" chunkType="SBAR"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15752" _ref_sofa="3" begin="0" end="27"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15760" _ref_sofa="3" begin="38" end="44"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15764" _ref_sofa="3" begin="46" end="55"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15768" _ref_sofa="3" begin="57" end="71"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15772" _ref_sofa="3" begin="73" end="89"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15776" _ref_sofa="3" begin="92" end="94"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15780" _ref_sofa="3" begin="100" end="138"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15788" _ref_sofa="3" begin="148" end="155"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15792" _ref_sofa="3" begin="158" end="173"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15796" _ref_sofa="3" begin="175" end="185"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15804" _ref_sofa="3" begin="187" end="213"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15812" _ref_sofa="3" begin="216" end="219"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15816" _ref_sofa="3" begin="243" end="247"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15820" _ref_sofa="3" begin="253" end="282"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15828" _ref_sofa="3" begin="285" end="288"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15832" _ref_sofa="3" begin="316" end="319"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15836" _ref_sofa="3" begin="333" end="337"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15840" _ref_sofa="3" begin="340" end="360"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15844" _ref_sofa="3" begin="362" end="393"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15848" _ref_sofa="3" begin="395" end="407"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15852" _ref_sofa="3" begin="412" end="422"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15856" _ref_sofa="3" begin="424" end="437"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15860" _ref_sofa="3" begin="439" end="456"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15868" _ref_sofa="3" begin="458" end="483"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15876" _ref_sofa="3" begin="485" end="500"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15880" _ref_sofa="3" begin="501" end="517"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15884" _ref_sofa="3" begin="528" end="542"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15888" _ref_sofa="3" begin="556" end="566"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15892" _ref_sofa="3" begin="581" end="599"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15896" _ref_sofa="3" begin="619" end="627"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15904" _ref_sofa="3" begin="649" end="657"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15908" _ref_sofa="3" begin="667" end="682"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15912" _ref_sofa="3" begin="684" end="711"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15920" _ref_sofa="3" begin="713" end="734"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15924" _ref_sofa="3" begin="735" end="751"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15928" _ref_sofa="3" begin="753" end="757"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15932" _ref_sofa="3" begin="759" end="769"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15936" _ref_sofa="3" begin="771" end="791"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15944" _ref_sofa="3" begin="794" end="814"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15952" _ref_sofa="3" begin="816" end="822"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15956" _ref_sofa="3" begin="824" end="831"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15960" _ref_sofa="3" begin="841" end="859"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15964" _ref_sofa="3" begin="861" end="881"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15968" _ref_sofa="3" begin="883" end="893"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15972" _ref_sofa="3" begin="895" end="912"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15976" _ref_sofa="3" begin="914" end="939"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15980" _ref_sofa="3" begin="941" end="956"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15988" _ref_sofa="3" begin="958" end="977"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15996" _ref_sofa="3" begin="984" end="996"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="16000" _ref_sofa="3" begin="998" end="1002"/>
+    <org.apache.ctakes.typesystem.type.textsem.DateAnnotation _indexed="1" _id="15151" _ref_sofa="3" begin="38" end="44" id="0" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.FractionAnnotation _indexed="1" _id="15168" _ref_sofa="3" begin="38" end="41" id="1" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation _indexed="1" _id="15185" _ref_sofa="3" begin="92" end="94" id="2" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation _indexed="1" _id="15202" _ref_sofa="3" begin="617" end="618" id="3" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.RangeAnnotation _indexed="1" _id="15219" _ref_sofa="3" begin="667" end="674" id="4" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="15236" _ref_sofa="3" begin="861" end="870" id="5" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15253" _ref_sofa="3" begin="0" end="27" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15258" _ref_sofa="3" begin="26" end="27" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15273" _ref_sofa="3" begin="38" end="44" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15278" _ref_sofa="3" begin="46" end="55" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15288" _ref_sofa="3" begin="57" end="71" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15293" _ref_sofa="3" begin="73" end="89" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15298" _ref_sofa="3" begin="92" end="94" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15313" _ref_sofa="3" begin="100" end="138" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15318" _ref_sofa="3" begin="107" end="138" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15333" _ref_sofa="3" begin="148" end="155" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15338" _ref_sofa="3" begin="158" end="173" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15343" _ref_sofa="3" begin="175" end="185" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15348" _ref_sofa="3" begin="184" end="185" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15353" _ref_sofa="3" begin="187" end="213" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15363" _ref_sofa="3" begin="198" end="213" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15368" _ref_sofa="3" begin="216" end="219" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15393" _ref_sofa="3" begin="243" end="247" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15403" _ref_sofa="3" begin="253" end="282" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15413" _ref_sofa="3" begin="272" end="282" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15418" _ref_sofa="3" begin="285" end="288" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15443" _ref_sofa="3" begin="316" end="319" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15453" _ref_sofa="3" begin="333" end="337" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15458" _ref_sofa="3" begin="340" end="360" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15463" _ref_sofa="3" begin="362" end="393" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15468" _ref_sofa="3" begin="395" end="407" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15478" _ref_sofa="3" begin="412" end="422" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15483" _ref_sofa="3" begin="424" end="437" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15488" _ref_sofa="3" begin="439" end="456" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15493" _ref_sofa="3" begin="452" end="456" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15498" _ref_sofa="3" begin="458" end="483" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15503" _ref_sofa="3" begin="470" end="483" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15508" _ref_sofa="3" begin="485" end="500" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15518" _ref_sofa="3" begin="501" end="517" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15533" _ref_sofa="3" begin="528" end="542" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15548" _ref_sofa="3" begin="556" end="566" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15563" _ref_sofa="3" begin="581" end="599" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15583" _ref_sofa="3" begin="619" end="627" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15588" _ref_sofa="3" begin="626" end="627" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15603" _ref_sofa="3" begin="649" end="657" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15613" _ref_sofa="3" begin="667" end="682" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15618" _ref_sofa="3" begin="684" end="711" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15623" _ref_sofa="3" begin="710" end="711" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15628" _ref_sofa="3" begin="713" end="734" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15638" _ref_sofa="3" begin="735" end="751" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15643" _ref_sofa="3" begin="753" end="757" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15648" _ref_sofa="3" begin="759" end="769" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15653" _ref_sofa="3" begin="771" end="791" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15658" _ref_sofa="3" begin="784" end="791" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15663" _ref_sofa="3" begin="794" end="814" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15668" _ref_sofa="3" begin="808" end="814" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15673" _ref_sofa="3" begin="816" end="822" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15678" _ref_sofa="3" begin="824" end="831" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15693" _ref_sofa="3" begin="841" end="859" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15698" _ref_sofa="3" begin="861" end="881" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15708" _ref_sofa="3" begin="883" end="893" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15713" _ref_sofa="3" begin="895" end="912" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15718" _ref_sofa="3" begin="914" end="939" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15723" _ref_sofa="3" begin="941" end="956" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15728" _ref_sofa="3" begin="950" end="956" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15733" _ref_sofa="3" begin="958" end="977" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15738" _ref_sofa="3" begin="970" end="977" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15748" _ref_sofa="3" begin="984" end="996" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="15753" _ref_sofa="3" begin="998" end="1002" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15263" _ref_sofa="3" begin="29" end="36" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15303" _ref_sofa="3" begin="95" end="97" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15323" _ref_sofa="3" begin="138" end="144" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15373" _ref_sofa="3" begin="220" end="222" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15398" _ref_sofa="3" begin="248" end="252" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15423" _ref_sofa="3" begin="289" end="303" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15448" _ref_sofa="3" begin="320" end="332" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15538" _ref_sofa="3" begin="543" end="550" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15558" _ref_sofa="3" begin="571" end="580" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15593" _ref_sofa="3" begin="628" end="643" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="15688" _ref_sofa="3" begin="834" end="838" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15268" _ref_sofa="3" begin="36" end="37" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15283" _ref_sofa="3" begin="55" end="56" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15308" _ref_sofa="3" begin="98" end="99" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15433" _ref_sofa="3" begin="308" end="309" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15473" _ref_sofa="3" begin="408" end="411" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15513" _ref_sofa="3" begin="500" end="501" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15523" _ref_sofa="3" begin="519" end="520" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15528" _ref_sofa="3" begin="521" end="527" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15553" _ref_sofa="3" begin="567" end="570" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15568" _ref_sofa="3" begin="602" end="603" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15573" _ref_sofa="3" begin="604" end="616" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15578" _ref_sofa="3" begin="617" end="618" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15633" _ref_sofa="3" begin="734" end="735" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15683" _ref_sofa="3" begin="832" end="833" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="15703" _ref_sofa="3" begin="881" end="882" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="15328" _ref_sofa="3" begin="145" end="147" chunkType="PP"/>
+    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="15358" _ref_sofa="3" begin="195" end="197" chunkType="PP"/>
+    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="15408" _ref_sofa="3" begin="267" end="271" chunkType="PP"/>
+    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="15543" _ref_sofa="3" begin="551" end="555" chunkType="PP"/>
+    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="15598" _ref_sofa="3" begin="644" end="648" chunkType="PP"/>
+    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="15378" _ref_sofa="3" begin="223" end="227" chunkType="ADVP"/>
+    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="15428" _ref_sofa="3" begin="304" end="308" chunkType="ADVP"/>
+    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="15608" _ref_sofa="3" begin="658" end="666" chunkType="ADVP"/>
+    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="15743" _ref_sofa="3" begin="978" end="981" chunkType="ADVP"/>
+    <org.apache.ctakes.typesystem.type.syntax.ADJP _indexed="1" _id="15383" _ref_sofa="3" begin="228" end="237" chunkType="ADJP"/>
+    <org.apache.ctakes.typesystem.type.syntax.SBAR _indexed="1" _id="15388" _ref_sofa="3" begin="238" end="242" chunkType="SBAR"/>
+    <org.apache.ctakes.typesystem.type.syntax.SBAR _indexed="1" _id="15438" _ref_sofa="3" begin="310" end="315" chunkType="SBAR"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15758" _ref_sofa="3" begin="0" end="27"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15766" _ref_sofa="3" begin="38" end="44"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15770" _ref_sofa="3" begin="46" end="55"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15774" _ref_sofa="3" begin="57" end="71"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15778" _ref_sofa="3" begin="73" end="89"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15782" _ref_sofa="3" begin="92" end="94"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15786" _ref_sofa="3" begin="100" end="138"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15794" _ref_sofa="3" begin="148" end="155"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15798" _ref_sofa="3" begin="158" end="173"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15802" _ref_sofa="3" begin="175" end="185"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15810" _ref_sofa="3" begin="187" end="213"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15818" _ref_sofa="3" begin="216" end="219"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15822" _ref_sofa="3" begin="243" end="247"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15826" _ref_sofa="3" begin="253" end="282"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15834" _ref_sofa="3" begin="285" end="288"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15838" _ref_sofa="3" begin="316" end="319"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15842" _ref_sofa="3" begin="333" end="337"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15846" _ref_sofa="3" begin="340" end="360"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15850" _ref_sofa="3" begin="362" end="393"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15854" _ref_sofa="3" begin="395" end="407"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15858" _ref_sofa="3" begin="412" end="422"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15862" _ref_sofa="3" begin="424" end="437"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15866" _ref_sofa="3" begin="439" end="456"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15874" _ref_sofa="3" begin="458" end="483"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15882" _ref_sofa="3" begin="485" end="500"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15886" _ref_sofa="3" begin="501" end="517"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15890" _ref_sofa="3" begin="528" end="542"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15894" _ref_sofa="3" begin="556" end="566"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15898" _ref_sofa="3" begin="581" end="599"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15902" _ref_sofa="3" begin="619" end="627"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15910" _ref_sofa="3" begin="649" end="657"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15914" _ref_sofa="3" begin="667" end="682"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15918" _ref_sofa="3" begin="684" end="711"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15926" _ref_sofa="3" begin="713" end="734"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15930" _ref_sofa="3" begin="735" end="751"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15934" _ref_sofa="3" begin="753" end="757"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15938" _ref_sofa="3" begin="759" end="769"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15942" _ref_sofa="3" begin="771" end="791"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15950" _ref_sofa="3" begin="794" end="814"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15958" _ref_sofa="3" begin="816" end="822"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15962" _ref_sofa="3" begin="824" end="831"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15966" _ref_sofa="3" begin="841" end="859"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15970" _ref_sofa="3" begin="861" end="881"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15974" _ref_sofa="3" begin="883" end="893"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15978" _ref_sofa="3" begin="895" end="912"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15982" _ref_sofa="3" begin="914" end="939"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15986" _ref_sofa="3" begin="941" end="956"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="15994" _ref_sofa="3" begin="958" end="977"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="16002" _ref_sofa="3" begin="984" end="996"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="16006" _ref_sofa="3" begin="998" end="1002"/>
     <uima.cas.EmptyFSList _id="15150"/>
     <org.apache.ctakes.typesystem.type.syntax.Lemma _id="15093" key="Noneest" posTag="RB"/>
     <org.apache.ctakes.typesystem.type.syntax.Lemma _id="15090" key="Noneest" posTag="JJ"/>

Modified: incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note.xml?rev=1454525&r1=1454524&r2=1454525&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note.xml (original)
+++ incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note.xml Fri Mar  8 20:13:00 2013
@@ -705,66 +705,66 @@
     <uima.cas.NonEmptyFSList _indexed="1" _id="4567" _ref_head="4501" _ref_tail="4570"/>
     <uima.cas.NonEmptyFSList _indexed="1" _id="4570" _ref_head="4504" _ref_tail="4573"/>
     <uima.cas.NonEmptyFSList _indexed="1" _id="4573" _ref_head="4507" _ref_tail="4576"/>
-    <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="4577" _ref_sofa="3" begin="229" end="235" id="3" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="4593" _ref_sofa="3" begin="219" end="225" id="2" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="4609" _ref_sofa="3" begin="262" end="267" id="5" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4625" _ref_sofa="3" begin="0" end="22" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4630" _ref_sofa="3" begin="23" end="34" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4640" _ref_sofa="3" begin="39" end="76" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4650" _ref_sofa="3" begin="64" end="76" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4660" _ref_sofa="3" begin="82" end="93" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4670" _ref_sofa="3" begin="108" end="164" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4680" _ref_sofa="3" begin="133" end="164" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4685" _ref_sofa="3" begin="148" end="164" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4690" _ref_sofa="3" begin="167" end="181" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4695" _ref_sofa="3" begin="175" end="181" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4710" _ref_sofa="3" begin="187" end="192" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4715" _ref_sofa="3" begin="194" end="203" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4730" _ref_sofa="3" begin="219" end="235" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4740" _ref_sofa="3" begin="229" end="235" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4755" _ref_sofa="3" begin="247" end="252" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4760" _ref_sofa="3" begin="254" end="267" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4765" _ref_sofa="3" begin="262" end="267" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4770" _ref_sofa="3" begin="269" end="282" chunkType="NP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="4635" _ref_sofa="3" begin="35" end="38" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="4665" _ref_sofa="3" begin="94" end="107" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="4720" _ref_sofa="3" begin="204" end="213" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="4775" _ref_sofa="3" begin="283" end="295" chunkType="VP"/>
-    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="4645" _ref_sofa="3" begin="60" end="63" chunkType="PP"/>
-    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="4655" _ref_sofa="3" begin="78" end="81" chunkType="PP"/>
-    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="4675" _ref_sofa="3" begin="130" end="132" chunkType="PP"/>
-    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="4725" _ref_sofa="3" begin="214" end="218" chunkType="PP"/>
-    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="4735" _ref_sofa="3" begin="226" end="228" chunkType="PP"/>
-    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="4700" _ref_sofa="3" begin="182" end="186" chunkType="ADVP"/>
-    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="4745" _ref_sofa="3" begin="236" end="240" chunkType="ADVP"/>
-    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="4750" _ref_sofa="3" begin="241" end="246" chunkType="ADVP"/>
-    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="4705" _ref_sofa="3" begin="186" end="187" chunkType="O"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4780" _ref_sofa="3" begin="0" end="22"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4784" _ref_sofa="3" begin="23" end="34"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4788" _ref_sofa="3" begin="39" end="76"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4796" _ref_sofa="3" begin="82" end="93"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4800" _ref_sofa="3" begin="108" end="164"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4812" _ref_sofa="3" begin="167" end="181"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4820" _ref_sofa="3" begin="187" end="192"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4824" _ref_sofa="3" begin="194" end="203"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4828" _ref_sofa="3" begin="219" end="235"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4836" _ref_sofa="3" begin="247" end="252"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4840" _ref_sofa="3" begin="254" end="267"/>
-    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4848" _ref_sofa="3" begin="269" end="282"/>
-    <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _indexed="1" _id="4860" _ref_sofa="3" begin="167" end="174" id="0" _ref_ontologyConceptArr="4852" typeID="1" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _indexed="1" _id="4894" _ref_sofa="3" begin="194" end="203" id="1" _ref_ontologyConceptArr="4886" typeID="1" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _indexed="1" _id="4928" _ref_sofa="3" begin="254" end="261" id="4" _ref_ontologyConceptArr="4920" typeID="1" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="4923" codingScheme="RXNORM" code="C6666666" oid="C6666666#RXNORM"/>
-    <uima.cas.FSArray _id="4920" size="1">
-        <i>4923</i>
+    <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="4577" _ref_sofa="3" begin="229" end="235" id="3" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="4594" _ref_sofa="3" begin="219" end="225" id="2" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="4611" _ref_sofa="3" begin="262" end="267" id="5" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4628" _ref_sofa="3" begin="0" end="22" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4633" _ref_sofa="3" begin="23" end="34" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4643" _ref_sofa="3" begin="39" end="76" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4653" _ref_sofa="3" begin="64" end="76" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4663" _ref_sofa="3" begin="82" end="93" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4673" _ref_sofa="3" begin="108" end="164" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4683" _ref_sofa="3" begin="133" end="164" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4688" _ref_sofa="3" begin="148" end="164" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4693" _ref_sofa="3" begin="167" end="181" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4698" _ref_sofa="3" begin="175" end="181" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4713" _ref_sofa="3" begin="187" end="192" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4718" _ref_sofa="3" begin="194" end="203" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4733" _ref_sofa="3" begin="219" end="235" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4743" _ref_sofa="3" begin="229" end="235" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4758" _ref_sofa="3" begin="247" end="252" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4763" _ref_sofa="3" begin="254" end="267" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4768" _ref_sofa="3" begin="262" end="267" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="4773" _ref_sofa="3" begin="269" end="282" chunkType="NP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="4638" _ref_sofa="3" begin="35" end="38" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="4668" _ref_sofa="3" begin="94" end="107" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="4723" _ref_sofa="3" begin="204" end="213" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="4778" _ref_sofa="3" begin="283" end="295" chunkType="VP"/>
+    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="4648" _ref_sofa="3" begin="60" end="63" chunkType="PP"/>
+    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="4658" _ref_sofa="3" begin="78" end="81" chunkType="PP"/>
+    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="4678" _ref_sofa="3" begin="130" end="132" chunkType="PP"/>
+    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="4728" _ref_sofa="3" begin="214" end="218" chunkType="PP"/>
+    <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="4738" _ref_sofa="3" begin="226" end="228" chunkType="PP"/>
+    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="4703" _ref_sofa="3" begin="182" end="186" chunkType="ADVP"/>
+    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="4748" _ref_sofa="3" begin="236" end="240" chunkType="ADVP"/>
+    <org.apache.ctakes.typesystem.type.syntax.ADVP _indexed="1" _id="4753" _ref_sofa="3" begin="241" end="246" chunkType="ADVP"/>
+    <org.apache.ctakes.typesystem.type.syntax.O _indexed="1" _id="4708" _ref_sofa="3" begin="186" end="187" chunkType="O"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4783" _ref_sofa="3" begin="0" end="22"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4787" _ref_sofa="3" begin="23" end="34"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4791" _ref_sofa="3" begin="39" end="76"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4799" _ref_sofa="3" begin="82" end="93"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4803" _ref_sofa="3" begin="108" end="164"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4815" _ref_sofa="3" begin="167" end="181"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4823" _ref_sofa="3" begin="187" end="192"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4827" _ref_sofa="3" begin="194" end="203"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4831" _ref_sofa="3" begin="219" end="235"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4839" _ref_sofa="3" begin="247" end="252"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4843" _ref_sofa="3" begin="254" end="267"/>
+    <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="4851" _ref_sofa="3" begin="269" end="282"/>
+    <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _indexed="1" _id="4863" _ref_sofa="3" begin="167" end="174" id="0" _ref_ontologyConceptArr="4855" typeID="1" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _indexed="1" _id="4898" _ref_sofa="3" begin="194" end="203" id="1" _ref_ontologyConceptArr="4890" typeID="1" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _indexed="1" _id="4933" _ref_sofa="3" begin="254" end="261" id="4" _ref_ontologyConceptArr="4925" typeID="1" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="4928" codingScheme="RXNORM" code="C6666666" oid="C6666666#RXNORM"/>
+    <uima.cas.FSArray _id="4925" size="1">
+        <i>4928</i>
     </uima.cas.FSArray>
-    <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="4889" codingScheme="RXNORM" code="C7777777" oid="C7777777#RXNORM"/>
-    <uima.cas.FSArray _id="4886" size="1">
-        <i>4889</i>
+    <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="4893" codingScheme="RXNORM" code="C7777777" oid="C7777777#RXNORM"/>
+    <uima.cas.FSArray _id="4890" size="1">
+        <i>4893</i>
     </uima.cas.FSArray>
-    <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="4855" codingScheme="RXNORM" code="C6666666" oid="C6666666#RXNORM"/>
-    <uima.cas.FSArray _id="4852" size="1">
-        <i>4855</i>
+    <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="4858" codingScheme="RXNORM" code="C6666666" oid="C6666666#RXNORM"/>
+    <uima.cas.FSArray _id="4855" size="1">
+        <i>4858</i>
     </uima.cas.FSArray>
     <uima.cas.EmptyFSList _id="4576"/>
     <org.apache.ctakes.typesystem.type.syntax.Lemma _id="4507" key="discontinuing" posTag="VB"/>

Modified: incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml?rev=1454525&r1=1454524&r2=1454525&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml (original)
+++ incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml Fri Mar  8 20:13:00 2013
@@ -213,16 +213,16 @@
     <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="1331" _ref_sofa="3" begin="28" end="38"/>
     <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="1335" _ref_sofa="3" begin="41" end="48"/>
     <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="1339" _ref_sofa="3" begin="56" end="65"/>
-    <org.apache.ctakes.typesystem.type.textsem.EntityMention _indexed="1" _id="1353" _ref_sofa="3" begin="28" end="32" id="0" _ref_ontologyConceptArr="1350" typeID="6" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.EntityMention _indexed="1" _id="1380" _ref_sofa="3" begin="56" end="60" id="1" _ref_ontologyConceptArr="1377" typeID="6" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.EntityMention _indexed="1" _id="1407" _ref_sofa="3" begin="61" end="65" id="2" _ref_ontologyConceptArr="1404" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="1397" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" cui="Cui0206" tui="T_SS"/>
-    <uima.cas.FSArray _id="1404" size="1">
-        <i>1397</i>
+    <org.apache.ctakes.typesystem.type.textsem.EntityMention _indexed="1" _id="1353" _ref_sofa="3" begin="28" end="32" id="0" _ref_ontologyConceptArr="1350" typeID="6" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.EntityMention _indexed="1" _id="1381" _ref_sofa="3" begin="61" end="65" id="2" _ref_ontologyConceptArr="1378" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.EntityMention _indexed="1" _id="1409" _ref_sofa="3" begin="56" end="60" id="1" _ref_ontologyConceptArr="1406" typeID="6" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="1399" codingScheme="SNOMED" code="100002" oid="100002#SNOMED" cui="Cui0002" tui="T_AS"/>
+    <uima.cas.FSArray _id="1406" size="1">
+        <i>1399</i>
     </uima.cas.FSArray>
-    <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="1370" codingScheme="SNOMED" code="100002" oid="100002#SNOMED" cui="Cui0002" tui="T_AS"/>
-    <uima.cas.FSArray _id="1377" size="1">
-        <i>1370</i>
+    <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="1371" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" cui="Cui0206" tui="T_SS"/>
+    <uima.cas.FSArray _id="1378" size="1">
+        <i>1371</i>
     </uima.cas.FSArray>
     <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="1343" codingScheme="SNOMED" code="100002" oid="100002#SNOMED" cui="Cui0002" tui="T_AS"/>
     <uima.cas.FSArray _id="1350" size="1">

Modified: incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testfakenote.txt.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testfakenote.txt.xml?rev=1454525&r1=1454524&r2=1454525&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testfakenote.txt.xml (original)
+++ incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testfakenote.txt.xml Fri Mar  8 20:13:00 2013
@@ -1242,16 +1242,16 @@
     <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="7909" _ref_sofa="3" begin="359" end="384"/>
     <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="7917" _ref_sofa="3" begin="404" end="408"/>
     <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="7921" _ref_sofa="3" begin="419" end="435"/>
-    <org.apache.ctakes.typesystem.type.textsem.EntityMention _indexed="1" _id="7939" _ref_sofa="3" begin="99" end="103" id="0" _ref_ontologyConceptArr="7936" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.EntityMention _indexed="1" _id="7966" _ref_sofa="3" begin="110" end="114" id="1" _ref_ontologyConceptArr="7963" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.textsem.EntityMention _indexed="1" _id="7993" _ref_sofa="3" begin="423" end="427" id="2" _ref_ontologyConceptArr="7990" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false"/>
-    <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="7983" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" cui="Cui0206" tui="T_SS"/>
-    <uima.cas.FSArray _id="7990" size="1">
-        <i>7983</i>
+    <org.apache.ctakes.typesystem.type.textsem.EntityMention _indexed="1" _id="7939" _ref_sofa="3" begin="99" end="103" id="0" _ref_ontologyConceptArr="7936" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.EntityMention _indexed="1" _id="7967" _ref_sofa="3" begin="110" end="114" id="1" _ref_ontologyConceptArr="7964" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.textsem.EntityMention _indexed="1" _id="7995" _ref_sofa="3" begin="423" end="427" id="2" _ref_ontologyConceptArr="7992" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+    <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="7985" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" cui="Cui0206" tui="T_SS"/>
+    <uima.cas.FSArray _id="7992" size="1">
+        <i>7985</i>
     </uima.cas.FSArray>
-    <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="7956" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" cui="Cui0206" tui="T_SS"/>
-    <uima.cas.FSArray _id="7963" size="1">
-        <i>7956</i>
+    <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="7957" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" cui="Cui0206" tui="T_SS"/>
+    <uima.cas.FSArray _id="7964" size="1">
+        <i>7957</i>
     </uima.cas.FSArray>
     <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="7929" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" cui="Cui0206" tui="T_SS"/>
     <uima.cas.FSArray _id="7936" size="1">



Mime
View raw message