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From chen...@apache.org
Subject svn commit: r1454525 [1/19] - in /incubator/ctakes/trunk/ctakes-regression-test: ./ desc/collection_processing_engine/ src/test/java/org/apache/ctakes/regression/test/ testdata/expectedoutput/CoreferenceCPETest/ testdata/expectedoutput/RegressionPipeli...
Date Fri, 08 Mar 2013 20:13:01 GMT
Author: chenpei
Date: Fri Mar  8 20:13:00 2013
New Revision: 1454525

URL: http://svn.apache.org/r1454525
Log:
CTAKES-84 - Adding Coreference pipeline to the regression test.

Added:
    incubator/ctakes/trunk/ctakes-regression-test/desc/collection_processing_engine/CoreferenceCPETest.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/SampleInputRadiologyNotes.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_current.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_past_smoker.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_unknown.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc2_07543210_sample_current.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc2_07543210_sample_past_smoker.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/sample_note.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/sample_note_plaintext.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/testfakenote.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/testpatient_plaintext_1.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/testpatient_plaintext_2.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/text1.txt.xml
Modified:
    incubator/ctakes/trunk/ctakes-regression-test/pom.xml
    incubator/ctakes/trunk/ctakes-regression-test/src/test/java/org/apache/ctakes/regression/test/RegressionPipelineTest.java
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/SampleInputRadiologyNotes.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc1_07543210_sample_current.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc1_07543210_sample_past_smoker.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc1_07543210_sample_unknown.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc2_07543210_sample_current.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc2_07543210_sample_past_smoker.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testfakenote.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_1.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_2.txt.xml
    incubator/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/text1.txt.xml

Added: incubator/ctakes/trunk/ctakes-regression-test/desc/collection_processing_engine/CoreferenceCPETest.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-regression-test/desc/collection_processing_engine/CoreferenceCPETest.xml?rev=1454525&view=auto
==============================================================================
--- incubator/ctakes/trunk/ctakes-regression-test/desc/collection_processing_engine/CoreferenceCPETest.xml
(added)
+++ incubator/ctakes/trunk/ctakes-regression-test/desc/collection_processing_engine/CoreferenceCPETest.xml
Fri Mar  8 20:13:00 2013
@@ -0,0 +1,79 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+<cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
+<collectionReader>
+<collectionIterator>
+<descriptor>
+<import location="../../../ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml"/>
+</descriptor>
+<configurationParameterSettings>
+<nameValuePair>
+<name>InputDirectory</name>
+<value>
+<string>testdata/input/plaintext</string>
+</value>
+</nameValuePair>
+</configurationParameterSettings>
+</collectionIterator>
+</collectionReader>
+<casProcessors casPoolSize="3" processingUnitThreadCount="1">
+<casProcessor deployment="integrated" name="CoreferenceCPETest">
+<descriptor>
+<import location="../../../ctakes-coreference/desc/analysis_engine/CorefProcessor.xml"/>
+</descriptor>
+<deploymentParameters/>
+<errorHandling>
+<errorRateThreshold action="terminate" value="0/1000"/>
+<maxConsecutiveRestarts action="terminate" value="30"/>
+<timeout max="100000" default="-1"/>
+</errorHandling>
+<checkpoint batch="10000" time="1000ms"/>
+</casProcessor>
+<casProcessor deployment="integrated" name="Write CAS to XML file">
+<descriptor>
+<import location="../../../ctakes-core/desc/cas_consumer/FileWriterCasConsumer.xml"/>
+</descriptor>
+<deploymentParameters/>
+<errorHandling>
+<errorRateThreshold action="terminate" value="0/1000"/>
+<maxConsecutiveRestarts action="terminate" value="30"/>
+<timeout max="100000" default="-1"/>
+</errorHandling>
+<checkpoint batch="10000" time="1000ms"/>
+<configurationParameterSettings>
+<nameValuePair>
+<!-- Make the output directory always the same name as this file name in the output dir-->
+<name>outputDir</name>
+<value>
+<string>testdata/generatedoutput/CoreferenceCPETest</string>
+</value>
+</nameValuePair>
+</configurationParameterSettings>
+</casProcessor>
+</casProcessors>
+<cpeConfig>
+<numToProcess>-1</numToProcess>
+<deployAs>immediate</deployAs>
+<checkpoint batch="0" time="300000"/>
+<timerImpl></timerImpl>
+</cpeConfig>
+</cpeDescription>

Modified: incubator/ctakes/trunk/ctakes-regression-test/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-regression-test/pom.xml?rev=1454525&r1=1454524&r2=1454525&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-regression-test/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-regression-test/pom.xml Fri Mar  8 20:13:00 2013
@@ -6,8 +6,8 @@
     <version>3.1.0-incubating-SNAPSHOT</version>
   </parent>
   <artifactId>ctakes-regression-test</artifactId>
-  <name>ctakes-regression-test</name>
-  <description>ctakes-regression-test</description>
+  <name>Apache cTAKES Regression-test</name>
+  <description>Apache cTAKES Regression-test</description>
   
 	<dependencies>
 		<dependency>

Modified: incubator/ctakes/trunk/ctakes-regression-test/src/test/java/org/apache/ctakes/regression/test/RegressionPipelineTest.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-regression-test/src/test/java/org/apache/ctakes/regression/test/RegressionPipelineTest.java?rev=1454525&r1=1454524&r2=1454525&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-regression-test/src/test/java/org/apache/ctakes/regression/test/RegressionPipelineTest.java
(original)
+++ incubator/ctakes/trunk/ctakes-regression-test/src/test/java/org/apache/ctakes/regression/test/RegressionPipelineTest.java
Fri Mar  8 20:13:00 2013
@@ -132,10 +132,9 @@ public class RegressionPipelineTest exte
 
 				Diff myDiff = new Diff(expected, generated);
 				// Only Testing the skeleton because the xml attributes in the
-				// xcas could be in different
-				// Ordering
-				myDiff.overrideElementQualifier(new ElementNameAndTextQualifier());
-				myDiff.overrideDifferenceListener(new IgnoreTextAndAttributeValuesDifferenceListener());
+				// xcas could be in different Ordering
+				//myDiff.overrideElementQualifier(new ElementNameAndTextQualifier());
+				//myDiff.overrideDifferenceListener(new IgnoreTextAndAttributeValuesDifferenceListener());
 				assertTrue("Verifying Test Output: " + file.getName() + myDiff,
 						myDiff.similar());
 				// assertXMLEqual("Verifying Test Output: " + file.getName(),



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