ctakes-commits mailing list archives: January 2013

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c...@apache.org svn commit: r1428980 - in /incubator/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal: ae/EventAnnotator.java eval/EvaluationOfEventSpans.java utils/SMOTEplus.java Fri, 04 Jan, 17:00
c...@apache.org svn commit: r1429043 - /incubator/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/SMOTEplus.java Fri, 04 Jan, 19:18
dlig...@apache.org svn commit: r1429860 - in /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data: GoldAnnotationAnalysis.java GoldAnnotationStats.java Mon, 07 Jan, 15:53
dlig...@apache.org svn commit: r1429977 - in /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data: GoldAnnotationAnalysis.java GoldAnnotationAnalysisPipeline.java GoldAnnotationStats.java GoldAnnotationStatsCalculator.java Mon, 07 Jan, 19:31
dlig...@apache.org svn commit: r1429986 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/GoldAnnotationStatsCalculator.java Mon, 07 Jan, 20:06
tm...@apache.org svn commit: r1430073 [1/7] - in /incubator/ctakes/trunk/ctakes-coreference: ./ .settings/ desc/ desc/analysis_engine/ desc/cas_consumer/ src/main/java/org/apache/ctakes/coreference/ae/ src/main/java/org/apache/ctakes/coreference/cc/ src/main/java/org/a... Mon, 07 Jan, 22:49
tm...@apache.org svn commit: r1430073 [6/7] - in /incubator/ctakes/trunk/ctakes-coreference: ./ .settings/ desc/ desc/analysis_engine/ desc/cas_consumer/ src/main/java/org/apache/ctakes/coreference/ae/ src/main/java/org/apache/ctakes/coreference/cc/ src/main/java/org/a... Mon, 07 Jan, 22:49
tm...@apache.org svn commit: r1430073 [4/7] - in /incubator/ctakes/trunk/ctakes-coreference: ./ .settings/ desc/ desc/analysis_engine/ desc/cas_consumer/ src/main/java/org/apache/ctakes/coreference/ae/ src/main/java/org/apache/ctakes/coreference/cc/ src/main/java/org/a... Mon, 07 Jan, 22:49
tm...@apache.org svn commit: r1430073 [7/7] - in /incubator/ctakes/trunk/ctakes-coreference: ./ .settings/ desc/ desc/analysis_engine/ desc/cas_consumer/ src/main/java/org/apache/ctakes/coreference/ae/ src/main/java/org/apache/ctakes/coreference/cc/ src/main/java/org/a... Mon, 07 Jan, 22:49
tm...@apache.org svn commit: r1430073 [2/7] - in /incubator/ctakes/trunk/ctakes-coreference: ./ .settings/ desc/ desc/analysis_engine/ desc/cas_consumer/ src/main/java/org/apache/ctakes/coreference/ae/ src/main/java/org/apache/ctakes/coreference/cc/ src/main/java/org/a... Mon, 07 Jan, 22:49
tm...@apache.org svn commit: r1430073 [5/7] - in /incubator/ctakes/trunk/ctakes-coreference: ./ .settings/ desc/ desc/analysis_engine/ desc/cas_consumer/ src/main/java/org/apache/ctakes/coreference/ae/ src/main/java/org/apache/ctakes/coreference/cc/ src/main/java/org/a... Mon, 07 Jan, 22:49
tm...@apache.org svn commit: r1430073 [3/7] - in /incubator/ctakes/trunk/ctakes-coreference: ./ .settings/ desc/ desc/analysis_engine/ desc/cas_consumer/ src/main/java/org/apache/ctakes/coreference/ae/ src/main/java/org/apache/ctakes/coreference/cc/ src/main/java/org/a... Mon, 07 Jan, 22:49
tm...@apache.org svn commit: r1430085 - in /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/features: FlatTreeFeatureExtractor.java PETFeatureExtractor.java Mon, 07 Jan, 23:15
tm...@apache.org svn commit: r1430101 - in /incubator/ctakes/trunk: ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/ ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/features/ Tue, 08 Jan, 00:12
tm...@apache.org svn commit: r1430107 - /incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeExtractor.java Tue, 08 Jan, 01:29
dlig...@apache.org svn commit: r1430337 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/GoldAnnotationStatsCalculator.java Tue, 08 Jan, 15:47
stevenbeth...@apache.org svn commit: r1430684 - in /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor: eval/RelationExtractorEvaluation.java pipelines/RelationExtractorTrain.java Wed, 09 Jan, 05:17
james-mas...@apache.org svn commit: r1430710 - /incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader.java Wed, 09 Jan, 06:52
chen...@apache.org svn commit: r1430838 - in /incubator/ctakes/trunk: DISCLAIMER NOTICE ctakes-distribution/DISCLAIMER ctakes-distribution/NOTICE ctakes-distribution/src/main/assembly/bin.xml Wed, 09 Jan, 13:09
seanfi...@apache.org svn commit: r1430968 - /incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCPE.bat Wed, 09 Jan, 17:26
dlig...@apache.org svn commit: r1430969 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/ Wed, 09 Jan, 17:28
seanfi...@apache.org svn commit: r1431000 - in /incubator/ctakes/trunk: ctakes-chunker/desc/analysis_engine/ ctakes-chunker/desc/collection_processing_engine/ ctakes-dictionary-lookup/desc/collection_processing_engine/ ctakes-side-effect/desc/collection_processing_engine/ Wed, 09 Jan, 18:24
seanfi...@apache.org svn commit: r1431008 - in /incubator/ctakes/trunk: ctakes-clinical-pipeline/desc/collection_processing_engine/ ctakes-constituency-parser/desc/collection_processing_engine/ ctakes-smoking-status/desc/analysis_engine/ Wed, 09 Jan, 18:57
seanfi...@apache.org svn commit: r1431015 - in /incubator/ctakes/trunk/ctakes-side-effect/desc: collection_processing_engine/ cpe/ Wed, 09 Jan, 19:15
seanfi...@apache.org svn commit: r1431028 - /incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ Wed, 09 Jan, 19:41
dlig...@apache.org svn commit: r1431112 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/ Wed, 09 Jan, 21:56
stevenbeth...@apache.org svn commit: r1431154 - in /incubator/ctakes/trunk/ctakes-temporal: pom.xml src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventSpans.java src/main/java/org/apache/ctakes/temporal/eval/Evaluation_ImplBase.java Wed, 09 Jan, 23:51
stevenbeth...@apache.org svn commit: r1431175 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/DegreeOfRelationExtractorAnnotator.java Thu, 10 Jan, 01:43
chen...@apache.org svn commit: r1431371 - in /incubator/ctakes/trunk: DISCLAIMER ctakes-distribution/NOTICE Thu, 10 Jan, 14:10
chen...@apache.org svn commit: r1431381 - in /incubator/ctakes/branches/ctakes-3.0.0-incubating: DISCLAIMER NOTICE ctakes-distribution/DISCLAIMER ctakes-distribution/NOTICE ctakes-distribution/src/main/assembly/bin.xml Thu, 10 Jan, 14:21
chen...@apache.org svn commit: r1431418 - in /incubator/ctakes/branches/ctakes-3.0.0-incubating: ./ ctakes-assertion/ ctakes-chunker/ ctakes-clinical-pipeline/ ctakes-constituency-parser/ ctakes-context-tokenizer/ ctakes-core/ ctakes-coreference/ ctakes-dependency-parser... Thu, 10 Jan, 15:24
chen...@apache.org svn commit: r1431419 - /incubator/ctakes/tags/ctakes-3.0.0-incubating-rc5/ Thu, 10 Jan, 15:24
chen...@apache.org svn commit: r1431421 - in /incubator/ctakes/branches/ctakes-3.0.0-incubating: ./ ctakes-assertion/ ctakes-chunker/ ctakes-clinical-pipeline/ ctakes-constituency-parser/ ctakes-context-tokenizer/ ctakes-core/ ctakes-coreference/ ctakes-dependency-parser... Thu, 10 Jan, 15:24
dlig...@apache.org svn commit: r1431575 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/Baseline2EntityMentionPairRelationExtractorAnnotator.java Thu, 10 Jan, 19:39
dlig...@apache.org svn commit: r1431594 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/Baseline1EntityMentionPairRelationExtractorAnnotator.java Thu, 10 Jan, 20:05
james-mas...@apache.org svn commit: r1432201 - /incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader.java Fri, 11 Jan, 18:15
spmurph...@apache.org svn commit: r1432283 - /incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step2_libsvm.xml Fri, 11 Jan, 20:57
spmurph...@apache.org svn commit: r1432287 - /incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step2_libsvm.xml Fri, 11 Jan, 21:09
dlig...@apache.org svn commit: r1432925 - in /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor: ae/Baseline3EntityMentionPairRelationExtractorAnnotator.java eval/RelationExtractorEvaluation.java Mon, 14 Jan, 14:12
dlig...@apache.org svn commit: r1432935 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/eval/RelationExtractorEvaluation.java Mon, 14 Jan, 14:53
dlig...@apache.org svn commit: r1432987 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/Baseline3EntityMentionPairRelationExtractorAnnotator.java Mon, 14 Jan, 16:48
dlig...@apache.org svn commit: r1432992 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/Baseline3EntityMentionPairRelationExtractorAnnotator.java Mon, 14 Jan, 17:08
stevenbeth...@apache.org svn commit: r1433051 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/eval/RelationExtractorEvaluation.java Mon, 14 Jan, 19:06
stevenbeth...@apache.org svn commit: r1433059 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/eval/RelationExtractorEvaluation.java Mon, 14 Jan, 19:12
dlig...@apache.org svn commit: r1433120 - in /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae: ./ baselines/ Mon, 14 Jan, 20:50
dlig...@apache.org svn commit: r1433160 - in /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor: ae/baselines/ eval/ Mon, 14 Jan, 21:52
dlig...@apache.org svn commit: r1433440 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/eval/RelationExtractorEvaluation.java Tue, 15 Jan, 14:37
mattco...@apache.org svn commit: r1433501 - /incubator/ctakes/trunk/ctakes-assertion-zoner/src/main/resources/org/mitre/medfacts/uima/mayo_sections.xml Tue, 15 Jan, 16:32
dlig...@apache.org svn commit: r1433586 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/baselines/ Tue, 15 Jan, 19:14
dlig...@apache.org svn commit: r1433595 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/baselines/ Tue, 15 Jan, 19:29
s..@apache.org svn commit: r1433828 - in /incubator/ctakes/trunk/ctakes-assertion: .settings/ src/main/java/org/apache/ctakes/assertion/attributes/features/ src/main/java/org/apache/ctakes/assertion/attributes/generic/ src/main/java/org/apache/ctakes/assertion/attrib... Wed, 16 Jan, 05:14
s..@apache.org svn commit: r1433829 - /incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/subject/SubjectAttributeClassifier.java Wed, 16 Jan, 05:15
james-mas...@apache.org svn commit: r1434573 - /incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader-Copy.java Thu, 17 Jan, 07:28
james-mas...@apache.org svn commit: r1434578 - in /incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae: SHARPKnowtatorXMLReader-Copy.java SHARPKnowtatorXMLReader.java Thu, 17 Jan, 07:37
james-mas...@apache.org svn commit: r1434586 - /incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader.java Thu, 17 Jan, 08:22
mattco...@apache.org svn commit: r1434924 - /incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AssertionCleartkAnalysisEngine.java Thu, 17 Jan, 21:31
james-mas...@apache.org svn commit: r1434948 - /incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader.java Thu, 17 Jan, 22:52
james-mas...@apache.org svn commit: r1434950 - /incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader.java Thu, 17 Jan, 23:06
mattco...@apache.org svn commit: r1435343 - in /incubator/ctakes/trunk/ctakes-clinical-pipeline/desc: analysis_engine/assertion_training_steps/ collection_processing_engine/assertion_training_steps/ Fri, 18 Jan, 21:12
mattco...@apache.org svn commit: r1435388 - in /incubator/ctakes/trunk/ctakes-core/desc: cas_consumer/__XmiWriterCasConsumer.xml collection_reader/XmiCollectionReaderCtakes.xml Fri, 18 Jan, 22:45
blee...@apache.org svn commit: r1435392 - /incubator/ctakes/site/trunk/content/ctakes/developerguide.mdtext Fri, 18 Jan, 22:46
build...@apache.org svn commit: r847228 - in /websites/staging/ctakes/trunk/content: ./ ctakes/developerguide.html Fri, 18 Jan, 22:46
blee...@apache.org svn commit: r847229 - /websites/production/ctakes/content/ Fri, 18 Jan, 22:46
mattco...@apache.org svn commit: r1435398 - /incubator/ctakes/trunk/ctakes-core/desc/collection_reader/XmiCollectionReaderCtakes.xml Fri, 18 Jan, 22:48
blee...@apache.org svn commit: r1437004 - /incubator/ctakes/site/trunk/content/ctakes/downloads.mdtext Tue, 22 Jan, 15:45
build...@apache.org svn commit: r847549 - in /websites/staging/ctakes/trunk/content: ./ ctakes/downloads.html Tue, 22 Jan, 15:45
blee...@apache.org svn commit: r847550 - /websites/production/ctakes/content/ Tue, 22 Jan, 15:45
blee...@apache.org svn commit: r1437020 - /incubator/ctakes/site/trunk/content/ctakes/downloads.mdtext Tue, 22 Jan, 16:13
build...@apache.org svn commit: r847556 - in /websites/staging/ctakes/trunk/content: ./ ctakes/downloads.html Tue, 22 Jan, 16:13
blee...@apache.org svn commit: r1437031 - /incubator/ctakes/site/trunk/cgi-bin Tue, 22 Jan, 16:29
build...@apache.org svn commit: r847558 - in /websites/staging/ctakes/trunk: cgi-bin content/ Tue, 22 Jan, 16:29
blee...@apache.org svn commit: r847559 - in /websites/production/ctakes: cgi-bin content/ Tue, 22 Jan, 16:29
blee...@apache.org svn commit: r1437033 - /incubator/ctakes/site/trunk/cgi-bin Tue, 22 Jan, 16:34
build...@apache.org svn commit: r847560 - in /websites/staging/ctakes/trunk: cgi-bin content/ Tue, 22 Jan, 16:34
blee...@apache.org svn commit: r847561 - in /websites/production/ctakes: cgi-bin content/ Tue, 22 Jan, 16:34
blee...@apache.org svn commit: r847562 - in /websites/production/ctakes: cgi-bin content/ Tue, 22 Jan, 16:35
blee...@apache.org svn commit: r1437042 - /incubator/ctakes/site/trunk/cgi-bin/ Tue, 22 Jan, 16:44
build...@apache.org svn commit: r847563 - in /websites/staging/ctakes/trunk: cgi-bin content/ Tue, 22 Jan, 16:44
blee...@apache.org svn commit: r1437043 - /incubator/ctakes/site/trunk/cgi-bin/downloads.cgi Tue, 22 Jan, 16:45
build...@apache.org svn commit: r847564 - in /websites/staging/ctakes/trunk: cgi-bin/ cgi-bin/downloads.cgi content/ Tue, 22 Jan, 16:45
blee...@apache.org svn commit: r847565 - in /websites/production/ctakes: cgi-bin/ content/ Tue, 22 Jan, 16:45
tm...@apache.org svn commit: r1437088 - /incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/MaxentParserWrapper.java Tue, 22 Jan, 18:41
s..@apache.org svn commit: r1437504 - in /incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core: ae/SHARPKnowtatorXMLReader.java util/SHARPKnowtatorXMLDefaults.java Wed, 23 Jan, 15:52
james-mas...@apache.org svn commit: r1437673 - /incubator/ctakes/site/trunk/content/ctakes/ppmc-faqs.mdtext Wed, 23 Jan, 20:00
build...@apache.org svn commit: r847689 - in /websites/staging/ctakes/trunk: cgi-bin/ content/ content/ctakes/ppmc-faqs.html Wed, 23 Jan, 20:00
james-mas...@apache.org svn commit: r847691 - in /websites/production/ctakes: cgi-bin/ content/ Wed, 23 Jan, 20:01
dlig...@apache.org svn commit: r1438056 - /incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/eval/RelationExtractorEvaluation.java Thu, 24 Jan, 15:57
s..@apache.org svn commit: r1438147 - in /incubator/ctakes/trunk: ctakes-assertion/src/main/java/org/apache/ctakes/assertion/eval/ ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/ ctakes-assertion/src/main/java/org/apache/ctakes/assertion/... Thu, 24 Jan, 19:52
tm...@apache.org svn commit: r1438201 - /incubator/ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/SectionSegmentAnnotator.xml Thu, 24 Jan, 21:25
s..@apache.org svn commit: r1438262 - in /incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk: AssertionCleartkAnalysisEngine.java PolarityCleartkAnalysisEngine.java SubjectCleartkAnalysisEngine.java Thu, 24 Jan, 23:26
mattco...@apache.org svn commit: r1438572 - /incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReader.java Fri, 25 Jan, 16:10
mattco...@apache.org svn commit: r1438632 - in /incubator/ctakes/trunk/ctakes-dictionary-lookup: ./ desc/analysis_engine/ doc/ doc/assertion_cue_phrase_index/ doc/assertion_cue_phrase_index/psv/ src/main/java/org/apache/ctakes/dictionary/assertion/ src/main/java/org/apache... Fri, 25 Jan, 18:29
mattco...@apache.org svn commit: r1438634 - /incubator/ctakes/trunk/ctakes-type-system/src/main/resources/org/apache/ctakes/typesystem/types/TypeSystem.xml Fri, 25 Jan, 18:32
mattco...@apache.org svn commit: r1438641 - in /incubator/ctakes/trunk/ctakes-assertion-zoner/src/main/java/org/mitre/medfacts/uima: RunZoner.java ZoneAnnotator.java Fri, 25 Jan, 18:38
mattco...@apache.org svn commit: r1438642 - /incubator/ctakes/trunk/ctakes-assertion/pom.xml Fri, 25 Jan, 18:41
mattco...@apache.org svn commit: r1438643 - /incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/TrainAllAssertionModels.txt Fri, 25 Jan, 18:48
mattco...@apache.org svn commit: r1438676 - in /incubator/ctakes/trunk/ctakes-assertion: resources/launch/ src/main/java/org/apache/ctakes/assertion/eval/ src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/ src/main/java/org/apache/ctakes/assertion/medfacts/cleartk... Fri, 25 Jan, 19:59
s..@apache.org svn commit: r1438724 - /incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/ Fri, 25 Jan, 21:30
stevenbeth...@apache.org svn commit: r1438758 - /incubator/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventAnnotator.java Fri, 25 Jan, 23:18
chen...@apache.org svn commit: r1438769 - in /incubator/ctakes/branches/ctakes-3.0.0-incubating: ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/models/ ctakes-chunker/src/main/resources/org/apache/ctakes/chunker/models/ ctakes-constituency-parser/src/mai... Fri, 25 Jan, 23:42
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