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From l..@apache.org
Subject svn commit: r961863 [14/34] - in /websites/production/commons/content/proper/commons-math: ./ apidocs/ apidocs/org/apache/commons/math3/analysis/class-use/ apidocs/org/apache/commons/math3/analysis/interpolation/ apidocs/org/apache/commons/math3/analys...
Date Fri, 14 Aug 2015 19:12:44 GMT
Modified: websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereInterpolatingFunction.java.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereInterpolatingFunction.java.html (original)
+++ websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereInterpolatingFunction.java.html Fri Aug 14 19:12:42 2015
@@ -34,7 +34,10 @@ import org.apache.commons.math3.util.Fas
  * Interpolating function that implements the
  * <a href="http://www.dudziak.com/microsphere.php">Microsphere Projection</a>.
  *
+ * @deprecated Code will be removed in 4.0.  Use {@link InterpolatingMicrosphere}
+ * and {@link MicrosphereProjectionInterpolator} instead.
  */
+@Deprecated
 public class MicrosphereInterpolatingFunction
     implements MultivariateFunction {
     /**
@@ -73,25 +76,25 @@ public class MicrosphereInterpolatingFun
          * @param n Normal vector characterizing a surface element
          * of the microsphere.
          */
-<span class="fc" id="L76">        MicrosphereSurfaceElement(double[] n) {</span>
-<span class="fc" id="L77">            normal = new ArrayRealVector(n);</span>
-<span class="fc" id="L78">        }</span>
+<span class="fc" id="L79">        MicrosphereSurfaceElement(double[] n) {</span>
+<span class="fc" id="L80">            normal = new ArrayRealVector(n);</span>
+<span class="fc" id="L81">        }</span>
 
         /**
          * Return the normal vector.
          * @return the normal vector
          */
         RealVector normal() {
-<span class="fc" id="L85">            return normal;</span>
+<span class="fc" id="L88">            return normal;</span>
         }
 
         /**
          * Reset &quot;illumination&quot; and &quot;sampleIndex&quot;.
          */
         void reset() {
-<span class="fc" id="L92">            brightestIllumination = 0;</span>
-<span class="fc" id="L93">            brightestSample = null;</span>
-<span class="fc" id="L94">        }</span>
+<span class="fc" id="L95">            brightestIllumination = 0;</span>
+<span class="fc" id="L96">            brightestSample = null;</span>
+<span class="fc" id="L97">        }</span>
 
         /**
          * Store the illumination and index of the brightest sample.
@@ -100,18 +103,18 @@ public class MicrosphereInterpolatingFun
          */
         void store(final double illuminationFromSample,
                    final Map.Entry&lt;RealVector, Double&gt; sample) {
-<span class="fc bfc" id="L103" title="All 2 branches covered.">            if (illuminationFromSample &gt; this.brightestIllumination) {</span>
-<span class="fc" id="L104">                this.brightestIllumination = illuminationFromSample;</span>
-<span class="fc" id="L105">                this.brightestSample = sample;</span>
+<span class="fc bfc" id="L106" title="All 2 branches covered.">            if (illuminationFromSample &gt; this.brightestIllumination) {</span>
+<span class="fc" id="L107">                this.brightestIllumination = illuminationFromSample;</span>
+<span class="fc" id="L108">                this.brightestSample = sample;</span>
             }
-<span class="fc" id="L107">        }</span>
+<span class="fc" id="L110">        }</span>
 
         /**
          * Get the illumination of the element.
          * @return the illumination.
          */
         double illumination() {
-<span class="fc" id="L114">            return brightestIllumination;</span>
+<span class="fc" id="L117">            return brightestIllumination;</span>
         }
 
         /**
@@ -119,7 +122,7 @@ public class MicrosphereInterpolatingFun
          * @return the sample.
          */
         Map.Entry&lt;RealVector, Double&gt; sample() {
-<span class="fc" id="L122">            return brightestSample;</span>
+<span class="fc" id="L125">            return brightestSample;</span>
         }
     }
 
@@ -149,45 +152,45 @@ public class MicrosphereInterpolatingFun
                                             UnitSphereRandomVectorGenerator rand)
         throws DimensionMismatchException,
                NoDataException,
-<span class="fc" id="L152">               NullArgumentException {</span>
-<span class="pc bpc" id="L153" title="2 of 4 branches missed.">        if (xval == null ||</span>
+<span class="fc" id="L155">               NullArgumentException {</span>
+<span class="pc bpc" id="L156" title="2 of 4 branches missed.">        if (xval == null ||</span>
             yval == null) {
-<span class="nc" id="L155">            throw new NullArgumentException();</span>
+<span class="nc" id="L158">            throw new NullArgumentException();</span>
         }
-<span class="pc bpc" id="L157" title="1 of 2 branches missed.">        if (xval.length == 0) {</span>
-<span class="nc" id="L158">            throw new NoDataException();</span>
+<span class="pc bpc" id="L160" title="1 of 2 branches missed.">        if (xval.length == 0) {</span>
+<span class="nc" id="L161">            throw new NoDataException();</span>
         }
-<span class="pc bpc" id="L160" title="1 of 2 branches missed.">        if (xval.length != yval.length) {</span>
-<span class="nc" id="L161">            throw new DimensionMismatchException(xval.length, yval.length);</span>
+<span class="pc bpc" id="L163" title="1 of 2 branches missed.">        if (xval.length != yval.length) {</span>
+<span class="nc" id="L164">            throw new DimensionMismatchException(xval.length, yval.length);</span>
         }
-<span class="pc bpc" id="L163" title="1 of 2 branches missed.">        if (xval[0] == null) {</span>
-<span class="nc" id="L164">            throw new NullArgumentException();</span>
+<span class="pc bpc" id="L166" title="1 of 2 branches missed.">        if (xval[0] == null) {</span>
+<span class="nc" id="L167">            throw new NullArgumentException();</span>
         }
 
-<span class="fc" id="L167">        dimension = xval[0].length;</span>
-<span class="fc" id="L168">        this.brightnessExponent = brightnessExponent;</span>
+<span class="fc" id="L170">        dimension = xval[0].length;</span>
+<span class="fc" id="L171">        this.brightnessExponent = brightnessExponent;</span>
 
         // Copy data samples.
-<span class="fc" id="L171">        samples = new HashMap&lt;RealVector, Double&gt;(yval.length);</span>
-<span class="fc bfc" id="L172" title="All 2 branches covered.">        for (int i = 0; i &lt; xval.length; ++i) {</span>
-<span class="fc" id="L173">            final double[] xvalI = xval[i];</span>
-<span class="pc bpc" id="L174" title="1 of 2 branches missed.">            if (xvalI == null) {</span>
-<span class="nc" id="L175">                throw new NullArgumentException();</span>
+<span class="fc" id="L174">        samples = new HashMap&lt;RealVector, Double&gt;(yval.length);</span>
+<span class="fc bfc" id="L175" title="All 2 branches covered.">        for (int i = 0; i &lt; xval.length; ++i) {</span>
+<span class="fc" id="L176">            final double[] xvalI = xval[i];</span>
+<span class="pc bpc" id="L177" title="1 of 2 branches missed.">            if (xvalI == null) {</span>
+<span class="nc" id="L178">                throw new NullArgumentException();</span>
             }
-<span class="pc bpc" id="L177" title="1 of 2 branches missed.">            if (xvalI.length != dimension) {</span>
-<span class="nc" id="L178">                throw new DimensionMismatchException(xvalI.length, dimension);</span>
+<span class="pc bpc" id="L180" title="1 of 2 branches missed.">            if (xvalI.length != dimension) {</span>
+<span class="nc" id="L181">                throw new DimensionMismatchException(xvalI.length, dimension);</span>
             }
 
-<span class="fc" id="L181">            samples.put(new ArrayRealVector(xvalI), yval[i]);</span>
+<span class="fc" id="L184">            samples.put(new ArrayRealVector(xvalI), yval[i]);</span>
         }
 
-<span class="fc" id="L184">        microsphere = new ArrayList&lt;MicrosphereSurfaceElement&gt;(microsphereElements);</span>
+<span class="fc" id="L187">        microsphere = new ArrayList&lt;MicrosphereSurfaceElement&gt;(microsphereElements);</span>
         // Generate the microsphere, assuming that a fairly large number of
         // randomly generated normals will represent a sphere.
-<span class="fc bfc" id="L187" title="All 2 branches covered.">        for (int i = 0; i &lt; microsphereElements; i++) {</span>
-<span class="fc" id="L188">            microsphere.add(new MicrosphereSurfaceElement(rand.nextVector()));</span>
+<span class="fc bfc" id="L190" title="All 2 branches covered.">        for (int i = 0; i &lt; microsphereElements; i++) {</span>
+<span class="fc" id="L191">            microsphere.add(new MicrosphereSurfaceElement(rand.nextVector()));</span>
         }
-<span class="fc" id="L190">    }</span>
+<span class="fc" id="L193">    }</span>
 
     /**
      * @param point Interpolation point.
@@ -195,46 +198,46 @@ public class MicrosphereInterpolatingFun
      * @throws DimensionMismatchException if point dimension does not math sample
      */
     public double value(double[] point) throws DimensionMismatchException {
-<span class="fc" id="L198">        final RealVector p = new ArrayRealVector(point);</span>
+<span class="fc" id="L201">        final RealVector p = new ArrayRealVector(point);</span>
 
         // Reset.
-<span class="fc bfc" id="L201" title="All 2 branches covered.">        for (MicrosphereSurfaceElement md : microsphere) {</span>
-<span class="fc" id="L202">            md.reset();</span>
-<span class="fc" id="L203">        }</span>
+<span class="fc bfc" id="L204" title="All 2 branches covered.">        for (MicrosphereSurfaceElement md : microsphere) {</span>
+<span class="fc" id="L205">            md.reset();</span>
+<span class="fc" id="L206">        }</span>
 
         // Compute contribution of each sample points to the microsphere elements illumination
-<span class="fc bfc" id="L206" title="All 2 branches covered.">        for (Map.Entry&lt;RealVector, Double&gt; sd : samples.entrySet()) {</span>
+<span class="fc bfc" id="L209" title="All 2 branches covered.">        for (Map.Entry&lt;RealVector, Double&gt; sd : samples.entrySet()) {</span>
 
             // Vector between interpolation point and current sample point.
-<span class="fc" id="L209">            final RealVector diff = sd.getKey().subtract(p);</span>
-<span class="fc" id="L210">            final double diffNorm = diff.getNorm();</span>
+<span class="fc" id="L212">            final RealVector diff = sd.getKey().subtract(p);</span>
+<span class="fc" id="L213">            final double diffNorm = diff.getNorm();</span>
 
-<span class="fc bfc" id="L212" title="All 2 branches covered.">            if (FastMath.abs(diffNorm) &lt; FastMath.ulp(1d)) {</span>
+<span class="fc bfc" id="L215" title="All 2 branches covered.">            if (FastMath.abs(diffNorm) &lt; FastMath.ulp(1d)) {</span>
                 // No need to interpolate, as the interpolation point is
                 // actually (very close to) one of the sampled points.
-<span class="fc" id="L215">                return sd.getValue();</span>
+<span class="fc" id="L218">                return sd.getValue();</span>
             }
 
-<span class="fc bfc" id="L218" title="All 2 branches covered.">            for (MicrosphereSurfaceElement md : microsphere) {</span>
-<span class="fc" id="L219">                final double w = FastMath.pow(diffNorm, -brightnessExponent);</span>
-<span class="fc" id="L220">                md.store(cosAngle(diff, md.normal()) * w, sd);</span>
-<span class="fc" id="L221">            }</span>
+<span class="fc bfc" id="L221" title="All 2 branches covered.">            for (MicrosphereSurfaceElement md : microsphere) {</span>
+<span class="fc" id="L222">                final double w = FastMath.pow(diffNorm, -brightnessExponent);</span>
+<span class="fc" id="L223">                md.store(cosAngle(diff, md.normal()) * w, sd);</span>
+<span class="fc" id="L224">            }</span>
 
-<span class="fc" id="L223">        }</span>
+<span class="fc" id="L226">        }</span>
 
         // Interpolation calculation.
-<span class="fc" id="L226">        double value = 0;</span>
-<span class="fc" id="L227">        double totalWeight = 0;</span>
-<span class="fc bfc" id="L228" title="All 2 branches covered.">        for (MicrosphereSurfaceElement md : microsphere) {</span>
-<span class="fc" id="L229">            final double iV = md.illumination();</span>
-<span class="fc" id="L230">            final Map.Entry&lt;RealVector, Double&gt; sd = md.sample();</span>
-<span class="pc bpc" id="L231" title="1 of 2 branches missed.">            if (sd != null) {</span>
-<span class="fc" id="L232">                value += iV * sd.getValue();</span>
-<span class="fc" id="L233">                totalWeight += iV;</span>
+<span class="fc" id="L229">        double value = 0;</span>
+<span class="fc" id="L230">        double totalWeight = 0;</span>
+<span class="fc bfc" id="L231" title="All 2 branches covered.">        for (MicrosphereSurfaceElement md : microsphere) {</span>
+<span class="fc" id="L232">            final double iV = md.illumination();</span>
+<span class="fc" id="L233">            final Map.Entry&lt;RealVector, Double&gt; sd = md.sample();</span>
+<span class="pc bpc" id="L234" title="1 of 2 branches missed.">            if (sd != null) {</span>
+<span class="fc" id="L235">                value += iV * sd.getValue();</span>
+<span class="fc" id="L236">                totalWeight += iV;</span>
             }
-<span class="fc" id="L235">        }</span>
+<span class="fc" id="L238">        }</span>
 
-<span class="fc" id="L237">        return value / totalWeight;</span>
+<span class="fc" id="L240">        return value / totalWeight;</span>
     }
 
     /**
@@ -245,7 +248,7 @@ public class MicrosphereInterpolatingFun
      * @return the cosine of the angle between {@code v} and {@code w}.
      */
     private double cosAngle(final RealVector v, final RealVector w) {
-<span class="fc" id="L248">        return v.dotProduct(w) / (v.getNorm() * w.getNorm());</span>
+<span class="fc" id="L251">        return v.dotProduct(w) / (v.getNorm() * w.getNorm());</span>
     }
 }
 </pre><div class="footer"><span class="right">Created with <a href="http://www.eclemma.org/jacoco">JaCoCo</a> 0.7.4.201502262128</span></div></body></html>
\ No newline at end of file

Modified: websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereInterpolator.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereInterpolator.html (original)
+++ websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereInterpolator.html Fri Aug 14 19:12:42 2015
@@ -1 +1 @@
-<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml" lang="en"><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8"/><link rel="stylesheet" href="../.resources/report.css" type="text/css"/><link rel="shortcut icon" href="../.resources/report.gif" type="image/gif"/><title>MicrosphereInterpolator</title><script type="text/javascript" src="../.resources/sort.js"></script></head><body onload="initialSort(['breadcrumb'])"><div class="breadcrumb" id="breadcrumb"><span class="info"><a href="../.sessions.html" class="el_session">Sessions</a></span><a href="../index.html" class="el_report">Apache Commons Math</a> &gt; <a href="index.html" class="el_package">org.apache.commons.math3.analysis.interpolation</a> &gt; <span class="el_class">MicrosphereInterpolator</span></div><h1>MicrosphereInterpolator</h1><table class="coverage" cellspacing=
 "0" id="coveragetable"><thead><tr><td class="sortable" id="a" onclick="toggleSort(this)">Element</td><td class="down sortable bar" id="b" onclick="toggleSort(this)">Missed Instructions</td><td class="sortable ctr2" id="c" onclick="toggleSort(this)">Cov.</td><td class="sortable bar" id="d" onclick="toggleSort(this)">Missed Branches</td><td class="sortable ctr2" id="e" onclick="toggleSort(this)">Cov.</td><td class="sortable ctr1" id="f" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="g" onclick="toggleSort(this)">Cxty</td><td class="sortable ctr1" id="h" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="i" onclick="toggleSort(this)">Lines</td><td class="sortable ctr1" id="j" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="k" onclick="toggleSort(this)">Methods</td></tr></thead><tfoot><tr><td>Total</td><td class="bar">12 of 49</td><td class="ctr2">76%</td><td class="bar">2 of 4</td><td class="ctr2">50%</td><td class="ctr1">2</td>
 <td class="ctr2">5</td><td class="ctr1">2</td><td class="ctr2">12</td><td class="ctr1">0</td><td class="ctr2">3</td></tr></tfoot><tbody><tr><td id="a2"><a href="MicrosphereInterpolator.java.html#L75" class="el_method">MicrosphereInterpolator(int, int)</a></td><td class="bar" id="b0"><img src="../.resources/redbar.gif" width="57" height="10" title="12" alt="12"/><img src="../.resources/greenbar.gif" width="62" height="10" title="13" alt="13"/></td><td class="ctr2" id="c2">52%</td><td class="bar" id="d0"><img src="../.resources/redbar.gif" width="60" height="10" title="2" alt="2"/><img src="../.resources/greenbar.gif" width="60" height="10" title="2" alt="2"/></td><td class="ctr2" id="e0">50%</td><td class="ctr1" id="f0">2</td><td class="ctr2" id="g0">3</td><td class="ctr1" id="h0">2</td><td class="ctr2" id="i0">8</td><td class="ctr1" id="j0">0</td><td class="ctr2" id="k0">1</td></tr><tr><td id="a0"><a href="MicrosphereInterpolator.java.html#L95" class="el_method">interpolate(double[]
 [], double[])</a></td><td class="bar" id="b1"><img src="../.resources/greenbar.gif" width="91" height="10" title="19" alt="19"/></td><td class="ctr2" id="c0">100%</td><td class="bar" id="d1"/><td class="ctr2" id="e1">n/a</td><td class="ctr1" id="f1">0</td><td class="ctr2" id="g1">1</td><td class="ctr1" id="h1">0</td><td class="ctr2" id="i1">2</td><td class="ctr1" id="j1">0</td><td class="ctr2" id="k1">1</td></tr><tr><td id="a1"><a href="MicrosphereInterpolator.java.html#L62" class="el_method">MicrosphereInterpolator()</a></td><td class="bar" id="b2"><img src="../.resources/greenbar.gif" width="24" height="10" title="5" alt="5"/></td><td class="ctr2" id="c1">100%</td><td class="bar" id="d2"/><td class="ctr2" id="e2">n/a</td><td class="ctr1" id="f2">0</td><td class="ctr2" id="g2">1</td><td class="ctr1" id="h2">0</td><td class="ctr2" id="i2">2</td><td class="ctr1" id="j2">0</td><td class="ctr2" id="k2">1</td></tr></tbody></table><div class="footer"><span class="right">Created with <a h
 ref="http://www.eclemma.org/jacoco">JaCoCo</a> 0.7.4.201502262128</span></div></body></html>
\ No newline at end of file
+<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml" lang="en"><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8"/><link rel="stylesheet" href="../.resources/report.css" type="text/css"/><link rel="shortcut icon" href="../.resources/report.gif" type="image/gif"/><title>MicrosphereInterpolator</title><script type="text/javascript" src="../.resources/sort.js"></script></head><body onload="initialSort(['breadcrumb'])"><div class="breadcrumb" id="breadcrumb"><span class="info"><a href="../.sessions.html" class="el_session">Sessions</a></span><a href="../index.html" class="el_report">Apache Commons Math</a> &gt; <a href="index.html" class="el_package">org.apache.commons.math3.analysis.interpolation</a> &gt; <span class="el_class">MicrosphereInterpolator</span></div><h1>MicrosphereInterpolator</h1><table class="coverage" cellspacing=
 "0" id="coveragetable"><thead><tr><td class="sortable" id="a" onclick="toggleSort(this)">Element</td><td class="down sortable bar" id="b" onclick="toggleSort(this)">Missed Instructions</td><td class="sortable ctr2" id="c" onclick="toggleSort(this)">Cov.</td><td class="sortable bar" id="d" onclick="toggleSort(this)">Missed Branches</td><td class="sortable ctr2" id="e" onclick="toggleSort(this)">Cov.</td><td class="sortable ctr1" id="f" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="g" onclick="toggleSort(this)">Cxty</td><td class="sortable ctr1" id="h" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="i" onclick="toggleSort(this)">Lines</td><td class="sortable ctr1" id="j" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="k" onclick="toggleSort(this)">Methods</td></tr></thead><tfoot><tr><td>Total</td><td class="bar">12 of 49</td><td class="ctr2">76%</td><td class="bar">2 of 4</td><td class="ctr2">50%</td><td class="ctr1">2</td>
 <td class="ctr2">5</td><td class="ctr1">2</td><td class="ctr2">12</td><td class="ctr1">0</td><td class="ctr2">3</td></tr></tfoot><tbody><tr><td id="a2"><a href="MicrosphereInterpolator.java.html#L78" class="el_method">MicrosphereInterpolator(int, int)</a></td><td class="bar" id="b0"><img src="../.resources/redbar.gif" width="57" height="10" title="12" alt="12"/><img src="../.resources/greenbar.gif" width="62" height="10" title="13" alt="13"/></td><td class="ctr2" id="c2">52%</td><td class="bar" id="d0"><img src="../.resources/redbar.gif" width="60" height="10" title="2" alt="2"/><img src="../.resources/greenbar.gif" width="60" height="10" title="2" alt="2"/></td><td class="ctr2" id="e0">50%</td><td class="ctr1" id="f0">2</td><td class="ctr2" id="g0">3</td><td class="ctr1" id="h0">2</td><td class="ctr2" id="i0">8</td><td class="ctr1" id="j0">0</td><td class="ctr2" id="k0">1</td></tr><tr><td id="a0"><a href="MicrosphereInterpolator.java.html#L98" class="el_method">interpolate(double[]
 [], double[])</a></td><td class="bar" id="b1"><img src="../.resources/greenbar.gif" width="91" height="10" title="19" alt="19"/></td><td class="ctr2" id="c0">100%</td><td class="bar" id="d1"/><td class="ctr2" id="e1">n/a</td><td class="ctr1" id="f1">0</td><td class="ctr2" id="g1">1</td><td class="ctr1" id="h1">0</td><td class="ctr2" id="i1">2</td><td class="ctr1" id="j1">0</td><td class="ctr2" id="k1">1</td></tr><tr><td id="a1"><a href="MicrosphereInterpolator.java.html#L65" class="el_method">MicrosphereInterpolator()</a></td><td class="bar" id="b2"><img src="../.resources/greenbar.gif" width="24" height="10" title="5" alt="5"/></td><td class="ctr2" id="c1">100%</td><td class="bar" id="d2"/><td class="ctr2" id="e2">n/a</td><td class="ctr1" id="f2">0</td><td class="ctr2" id="g2">1</td><td class="ctr1" id="h2">0</td><td class="ctr2" id="i2">2</td><td class="ctr1" id="j2">0</td><td class="ctr2" id="k2">1</td></tr></tbody></table><div class="footer"><span class="right">Created with <a h
 ref="http://www.eclemma.org/jacoco">JaCoCo</a> 0.7.4.201502262128</span></div></body></html>
\ No newline at end of file

Modified: websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereInterpolator.java.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereInterpolator.java.html (original)
+++ websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereInterpolator.java.html Fri Aug 14 19:12:42 2015
@@ -30,7 +30,10 @@ import org.apache.commons.math3.random.U
  * &lt;a href=&quot;http://www.dudziak.com/microsphere.pdf&quot;&gt;MS thesis&lt;/a&gt;.
  *
  * @since 2.1
+ * @deprecated Code will be removed in 4.0.  Use {@link InterpolatingMicrosphere}
+ * and {@link MicrosphereProjectionInterpolator} instead.
  */
+@Deprecated
 public class MicrosphereInterpolator
     implements MultivariateInterpolator {
     /**
@@ -59,8 +62,8 @@ public class MicrosphereInterpolator
      * MicrosphereInterpolator.DEFAULT_BRIGHTNESS_EXPONENT)}.
      */
     public MicrosphereInterpolator() {
-<span class="fc" id="L62">        this(DEFAULT_MICROSPHERE_ELEMENTS, DEFAULT_BRIGHTNESS_EXPONENT);</span>
-<span class="fc" id="L63">    }</span>
+<span class="fc" id="L65">        this(DEFAULT_MICROSPHERE_ELEMENTS, DEFAULT_BRIGHTNESS_EXPONENT);</span>
+<span class="fc" id="L66">    }</span>
 
     /** Create a microsphere interpolator.
      * @param elements Number of surface elements of the microsphere.
@@ -72,17 +75,17 @@ public class MicrosphereInterpolator
     public MicrosphereInterpolator(final int elements,
                                    final int exponent)
         throws NotPositiveException,
-<span class="fc" id="L75">               NotStrictlyPositiveException {</span>
-<span class="pc bpc" id="L76" title="1 of 2 branches missed.">        if (exponent &lt; 0) {</span>
-<span class="nc" id="L77">            throw new NotPositiveException(exponent);</span>
+<span class="fc" id="L78">               NotStrictlyPositiveException {</span>
+<span class="pc bpc" id="L79" title="1 of 2 branches missed.">        if (exponent &lt; 0) {</span>
+<span class="nc" id="L80">            throw new NotPositiveException(exponent);</span>
         }
-<span class="pc bpc" id="L79" title="1 of 2 branches missed.">        if (elements &lt;= 0) {</span>
-<span class="nc" id="L80">            throw new NotStrictlyPositiveException(elements);</span>
+<span class="pc bpc" id="L82" title="1 of 2 branches missed.">        if (elements &lt;= 0) {</span>
+<span class="nc" id="L83">            throw new NotStrictlyPositiveException(elements);</span>
         }
 
-<span class="fc" id="L83">        microsphereElements = elements;</span>
-<span class="fc" id="L84">        brightnessExponent = exponent;</span>
-<span class="fc" id="L85">    }</span>
+<span class="fc" id="L86">        microsphereElements = elements;</span>
+<span class="fc" id="L87">        brightnessExponent = exponent;</span>
+<span class="fc" id="L88">    }</span>
 
     /**
      * {@inheritDoc}
@@ -92,9 +95,9 @@ public class MicrosphereInterpolator
         throws DimensionMismatchException,
                NoDataException,
                NullArgumentException {
-<span class="fc" id="L95">        final UnitSphereRandomVectorGenerator rand</span>
+<span class="fc" id="L98">        final UnitSphereRandomVectorGenerator rand</span>
             = new UnitSphereRandomVectorGenerator(xval[0].length);
-<span class="fc" id="L97">        return new MicrosphereInterpolatingFunction(xval, yval,</span>
+<span class="fc" id="L100">        return new MicrosphereInterpolatingFunction(xval, yval,</span>
                                                     brightnessExponent,
                                                     microsphereElements,
                                                     rand);

Added: websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereProjectionInterpolator$1.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereProjectionInterpolator$1.html (added)
+++ websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereProjectionInterpolator$1.html Fri Aug 14 19:12:42 2015
@@ -0,0 +1 @@
+<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml" lang="en"><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8"/><link rel="stylesheet" href="../.resources/report.css" type="text/css"/><link rel="shortcut icon" href="../.resources/report.gif" type="image/gif"/><title>MicrosphereProjectionInterpolator.new MultivariateFunction() {...}</title><script type="text/javascript" src="../.resources/sort.js"></script></head><body onload="initialSort(['breadcrumb'])"><div class="breadcrumb" id="breadcrumb"><span class="info"><a href="../.sessions.html" class="el_session">Sessions</a></span><a href="../index.html" class="el_report">Apache Commons Math</a> &gt; <a href="index.html" class="el_package">org.apache.commons.math3.analysis.interpolation</a> &gt; <span class="el_class">MicrosphereProjectionInterpolator.new MultivariateFunction() 
 {...}</span></div><h1>MicrosphereProjectionInterpolator.new MultivariateFunction() {...}</h1><table class="coverage" cellspacing="0" id="coveragetable"><thead><tr><td class="sortable" id="a" onclick="toggleSort(this)">Element</td><td class="down sortable bar" id="b" onclick="toggleSort(this)">Missed Instructions</td><td class="sortable ctr2" id="c" onclick="toggleSort(this)">Cov.</td><td class="sortable bar" id="d" onclick="toggleSort(this)">Missed Branches</td><td class="sortable ctr2" id="e" onclick="toggleSort(this)">Cov.</td><td class="sortable ctr1" id="f" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="g" onclick="toggleSort(this)">Cxty</td><td class="sortable ctr1" id="h" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="i" onclick="toggleSort(this)">Lines</td><td class="sortable ctr1" id="j" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="k" onclick="toggleSort(this)">Methods</td></tr></thead><tfoot><tr><td>Total</td>
 <td class="bar">0 of 30</td><td class="ctr2">100%</td><td class="bar">0 of 0</td><td class="ctr2">n/a</td><td class="ctr1">0</td><td class="ctr2">2</td><td class="ctr1">0</td><td class="ctr2">2</td><td class="ctr1">0</td><td class="ctr2">2</td></tr></tfoot><tbody><tr><td id="a1"><a href="MicrosphereProjectionInterpolator.java.html#L154" class="el_method">{...}</a></td><td class="bar" id="b0"><img src="../.resources/greenbar.gif" width="120" height="10" title="15" alt="15"/></td><td class="ctr2" id="c0">100%</td><td class="bar" id="d0"/><td class="ctr2" id="e0">n/a</td><td class="ctr1" id="f0">0</td><td class="ctr2" id="g0">1</td><td class="ctr1" id="h0">0</td><td class="ctr2" id="i0">1</td><td class="ctr1" id="j0">0</td><td class="ctr2" id="k0">1</td></tr><tr><td id="a0"><a href="MicrosphereProjectionInterpolator.java.html#L158" class="el_method">value(double[])</a></td><td class="bar" id="b1"><img src="../.resources/greenbar.gif" width="120" height="10" title="15" alt="15"/></td><t
 d class="ctr2" id="c1">100%</td><td class="bar" id="d1"/><td class="ctr2" id="e1">n/a</td><td class="ctr1" id="f1">0</td><td class="ctr2" id="g1">1</td><td class="ctr1" id="h1">0</td><td class="ctr2" id="i1">1</td><td class="ctr1" id="j1">0</td><td class="ctr2" id="k1">1</td></tr></tbody></table><div class="footer"><span class="right">Created with <a href="http://www.eclemma.org/jacoco">JaCoCo</a> 0.7.4.201502262128</span></div></body></html>
\ No newline at end of file

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Added: websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereProjectionInterpolator.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereProjectionInterpolator.html (added)
+++ websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereProjectionInterpolator.html Fri Aug 14 19:12:42 2015
@@ -0,0 +1 @@
+<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml" lang="en"><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8"/><link rel="stylesheet" href="../.resources/report.css" type="text/css"/><link rel="shortcut icon" href="../.resources/report.gif" type="image/gif"/><title>MicrosphereProjectionInterpolator</title><script type="text/javascript" src="../.resources/sort.js"></script></head><body onload="initialSort(['breadcrumb'])"><div class="breadcrumb" id="breadcrumb"><span class="info"><a href="../.sessions.html" class="el_session">Sessions</a></span><a href="../index.html" class="el_report">Apache Commons Math</a> &gt; <a href="index.html" class="el_package">org.apache.commons.math3.analysis.interpolation</a> &gt; <span class="el_class">MicrosphereProjectionInterpolator</span></div><h1>MicrosphereProjectionInterpolator</h1><table
  class="coverage" cellspacing="0" id="coveragetable"><thead><tr><td class="sortable" id="a" onclick="toggleSort(this)">Element</td><td class="down sortable bar" id="b" onclick="toggleSort(this)">Missed Instructions</td><td class="sortable ctr2" id="c" onclick="toggleSort(this)">Cov.</td><td class="sortable bar" id="d" onclick="toggleSort(this)">Missed Branches</td><td class="sortable ctr2" id="e" onclick="toggleSort(this)">Cov.</td><td class="sortable ctr1" id="f" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="g" onclick="toggleSort(this)">Cxty</td><td class="sortable ctr1" id="h" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="i" onclick="toggleSort(this)">Lines</td><td class="sortable ctr1" id="j" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="k" onclick="toggleSort(this)">Methods</td></tr></thead><tfoot><tr><td>Total</td><td class="bar">38 of 116</td><td class="ctr2">67%</td><td class="bar">8 of 16</td><td class="ctr2"
 >50%</td><td class="ctr1">8</td><td class="ctr2">11</td><td class="ctr1">6</td><td class="ctr2">23</td><td class="ctr1">0</td><td class="ctr2">3</td></tr></tfoot><tbody><tr><td id="a0"><a href="MicrosphereProjectionInterpolator.java.html#L133" class="el_method">interpolate(double[][], double[])</a></td><td class="bar" id="b0"><img src="../.resources/redbar.gif" width="52" height="10" title="32" alt="32"/><img src="../.resources/greenbar.gif" width="67" height="10" title="41" alt="41"/></td><td class="ctr2" id="c2">56%</td><td class="bar" id="d0"><img src="../.resources/redbar.gif" width="60" height="10" title="7" alt="7"/><img src="../.resources/greenbar.gif" width="60" height="10" title="7" alt="7"/></td><td class="ctr2" id="e0">50%</td><td class="ctr1" id="f0">7</td><td class="ctr2" id="g0">8</td><td class="ctr1" id="h0">5</td><td class="ctr2" id="i0">13</td><td class="ctr1" id="j0">0</td><td class="ctr2" id="k0">1</td></tr><tr><td id="a2"><a href="MicrosphereProjectionInterpolato
 r.java.html#L110" class="el_method">MicrosphereProjectionInterpolator(InterpolatingMicrosphere, double, boolean, double)</a></td><td class="bar" id="b1"><img src="../.resources/redbar.gif" width="9" height="10" title="6" alt="6"/><img src="../.resources/greenbar.gif" width="31" height="10" title="19" alt="19"/></td><td class="ctr2" id="c1">76%</td><td class="bar" id="d1"><img src="../.resources/redbar.gif" width="8" height="10" title="1" alt="1"/><img src="../.resources/greenbar.gif" width="8" height="10" title="1" alt="1"/></td><td class="ctr2" id="e1">50%</td><td class="ctr1" id="f1">1</td><td class="ctr2" id="g1">2</td><td class="ctr1" id="h1">1</td><td class="ctr2" id="i1">8</td><td class="ctr1" id="j1">0</td><td class="ctr2" id="k1">1</td></tr><tr><td id="a1"><a href="MicrosphereProjectionInterpolator.java.html#L80" class="el_method">MicrosphereProjectionInterpolator(int, int, double, double, double, double, boolean, double)</a></td><td class="bar" id="b2"><img src="../.resourc
 es/greenbar.gif" width="29" height="10" title="18" alt="18"/></td><td class="ctr2" id="c0">100%</td><td class="bar" id="d2"/><td class="ctr2" id="e2">n/a</td><td class="ctr1" id="f2">0</td><td class="ctr2" id="g2">1</td><td class="ctr1" id="h2">0</td><td class="ctr2" id="i2">2</td><td class="ctr1" id="j2">0</td><td class="ctr2" id="k2">1</td></tr></tbody></table><div class="footer"><span class="right">Created with <a href="http://www.eclemma.org/jacoco">JaCoCo</a> 0.7.4.201502262128</span></div></body></html>
\ No newline at end of file

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Added: websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereProjectionInterpolator.java.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereProjectionInterpolator.java.html (added)
+++ websites/production/commons/content/proper/commons-math/jacoco/org.apache.commons.math3.analysis.interpolation/MicrosphereProjectionInterpolator.java.html Fri Aug 14 19:12:42 2015
@@ -0,0 +1,167 @@
+<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml" lang="en"><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8"/><link rel="stylesheet" href="../.resources/report.css" type="text/css"/><link rel="shortcut icon" href="../.resources/report.gif" type="image/gif"/><title>MicrosphereProjectionInterpolator.java</title><link rel="stylesheet" href="../.resources/prettify.css" type="text/css"/><script type="text/javascript" src="../.resources/prettify.js"></script></head><body onload="window['PR_TAB_WIDTH']=4;prettyPrint()"><div class="breadcrumb" id="breadcrumb"><span class="info"><a href="../.sessions.html" class="el_session">Sessions</a></span><a href="../index.html" class="el_report">Apache Commons Math</a> &gt; <a href="index.source.html" class="el_package">org.apache.commons.math3.analysis.interpolation</a> &gt; <span class="el_
 source">MicrosphereProjectionInterpolator.java</span></div><h1>MicrosphereProjectionInterpolator.java</h1><pre class="source lang-java linenums">/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the &quot;License&quot;); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an &quot;AS IS&quot; BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.commons.math3.analysis.interpolation;
+
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.exception.DimensionMismatchException;
+import org.apache.commons.math3.exception.NoDataException;
+import org.apache.commons.math3.exception.NotPositiveException;
+import org.apache.commons.math3.exception.NullArgumentException;
+import org.apache.commons.math3.random.UnitSphereRandomVectorGenerator;
+
+/**
+ * Interpolator that implements the algorithm described in
+ * &lt;em&gt;William Dudziak&lt;/em&gt;'s
+ * &lt;a href=&quot;http://www.dudziak.com/microsphere.pdf&quot;&gt;MS thesis&lt;/a&gt;.
+ *
+ * @since 3.6
+ */
+public class MicrosphereProjectionInterpolator
+    implements MultivariateInterpolator {
+    /** Brightness exponent. */
+    private final double exponent;
+    /** Microsphere. */
+    private final InterpolatingMicrosphere microsphere;
+    /** Whether to share the sphere. */
+    private final boolean sharedSphere;
+    /** Tolerance value below which no interpolation is necessary. */
+    private final double noInterpolationTolerance;
+
+    /**
+     * Create a microsphere interpolator.
+     *
+     * @param dimension Space dimension.
+     * @param elements Number of surface elements of the microsphere.
+     * @param exponent Exponent used in the power law that computes the
+     * @param maxDarkFraction Maximum fraction of the facets that can be dark.
+     * If the fraction of &quot;non-illuminated&quot; facets is larger, no estimation
+     * of the value will be performed, and the {@code background} value will
+     * be returned instead.
+     * @param darkThreshold Value of the illumination below which a facet is
+     * considered dark.
+     * @param background Value returned when the {@code maxDarkFraction}
+     * threshold is exceeded.
+     * @param sharedSphere Whether the sphere can be shared among the
+     * interpolating function instances.  If {@code true}, the instances
+     * will share the same data, and thus will &lt;em&gt;not&lt;/em&gt; be thread-safe.
+     * @param noInterpolationTolerance When the distance between an
+     * interpolated point and one of the sample points is less than this
+     * value, no interpolation will be performed (the value of the sample
+     * will be returned).
+     * @throws org.apache.commons.math3.exception.NotStrictlyPositiveException
+     * if {@code dimension &lt;= 0} or {@code elements &lt;= 0}.
+     * @throws NotPositiveException if {@code exponent &lt; 0}.
+     * @throws NotPositiveException if {@code darkThreshold &lt; 0}.
+     * @throws org.apache.commons.math3.exception.OutOfRangeException if
+     * {@code maxDarkFraction} does not belong to the interval {@code [0, 1]}.
+     */
+    public MicrosphereProjectionInterpolator(int dimension,
+                                             int elements,
+                                             double maxDarkFraction,
+                                             double darkThreshold,
+                                             double background,
+                                             double exponent,
+                                             boolean sharedSphere,
+                                             double noInterpolationTolerance) {
+<span class="fc" id="L80">        this(new InterpolatingMicrosphere(dimension,</span>
+                                          elements,
+                                          maxDarkFraction,
+                                          darkThreshold,
+                                          background,
+                                          new UnitSphereRandomVectorGenerator(dimension)),
+             exponent,
+             sharedSphere,
+             noInterpolationTolerance);
+<span class="fc" id="L89">    }</span>
+
+    /**
+     * Create a microsphere interpolator.
+     *
+     * @param microsphere Microsphere.
+     * @param exponent Exponent used in the power law that computes the
+     * weights (distance dimming factor) of the sample data.
+     * @param sharedSphere Whether the sphere can be shared among the
+     * interpolating function instances.  If {@code true}, the instances
+     * will share the same data, and thus will &lt;em&gt;not&lt;/em&gt; be thread-safe.
+     * @param noInterpolationTolerance When the distance between an
+     * interpolated point and one of the sample points is less than this
+     * value, no interpolation will be performed (the value of the sample
+     * will be returned).
+     * @throws NotPositiveException if {@code exponent &lt; 0}.
+     */
+    public MicrosphereProjectionInterpolator(InterpolatingMicrosphere microsphere,
+                                             double exponent,
+                                             boolean sharedSphere,
+                                             double noInterpolationTolerance)
+<span class="fc" id="L110">        throws NotPositiveException {</span>
+<span class="pc bpc" id="L111" title="1 of 2 branches missed.">        if (exponent &lt; 0) {</span>
+<span class="nc" id="L112">            throw new NotPositiveException(exponent);</span>
+        }
+
+<span class="fc" id="L115">        this.microsphere = microsphere;</span>
+<span class="fc" id="L116">        this.exponent = exponent;</span>
+<span class="fc" id="L117">        this.sharedSphere = sharedSphere;</span>
+<span class="fc" id="L118">        this.noInterpolationTolerance = noInterpolationTolerance;</span>
+<span class="fc" id="L119">    }</span>
+
+    /**
+     * {@inheritDoc}
+     *
+     * @throws DimensionMismatchException if the space dimension of the
+     * given samples does not match the space dimension of the microsphere.
+     */
+    @Override
+    public MultivariateFunction interpolate(final double[][] xval,
+                                            final double[] yval)
+        throws DimensionMismatchException,
+               NoDataException,
+               NullArgumentException {
+<span class="pc bpc" id="L133" title="2 of 4 branches missed.">        if (xval == null ||</span>
+            yval == null) {
+<span class="nc" id="L135">            throw new NullArgumentException();</span>
+        }
+<span class="pc bpc" id="L137" title="1 of 2 branches missed.">        if (xval.length == 0) {</span>
+<span class="nc" id="L138">            throw new NoDataException();</span>
+        }
+<span class="pc bpc" id="L140" title="1 of 2 branches missed.">        if (xval.length != yval.length) {</span>
+<span class="nc" id="L141">            throw new DimensionMismatchException(xval.length, yval.length);</span>
+        }
+<span class="pc bpc" id="L143" title="1 of 2 branches missed.">        if (xval[0] == null) {</span>
+<span class="nc" id="L144">            throw new NullArgumentException();</span>
+        }
+<span class="fc" id="L146">        final int dimension = microsphere.getDimension();</span>
+<span class="pc bpc" id="L147" title="1 of 2 branches missed.">        if (dimension != xval[0].length) {</span>
+<span class="nc" id="L148">            throw new DimensionMismatchException(xval[0].length, dimension);</span>
+        }
+
+        // Microsphere copy.
+<span class="pc bpc" id="L152" title="1 of 2 branches missed.">        final InterpolatingMicrosphere m = sharedSphere ? microsphere : microsphere.copy();</span>
+
+<span class="fc" id="L154">        return new MultivariateFunction() {</span>
+            /** {inheritDoc} */
+            @Override
+            public double value(double[] point) {
+<span class="fc" id="L158">                return m.value(point,</span>
+                               xval,
+                               yval,
+                               exponent,
+                               noInterpolationTolerance);
+            }
+        };
+    }
+}
+</pre><div class="footer"><span class="right">Created with <a href="http://www.eclemma.org/jacoco">JaCoCo</a> 0.7.4.201502262128</span></div></body></html>
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