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From l..@apache.org
Subject svn commit: r959801 [1/10] - in /websites/production/commons/content/proper/commons-math/apidocs: ./ org/apache/commons/math3/exception/class-use/ org/apache/commons/math3/fraction/ org/apache/commons/math3/geometry/euclidean/oned/class-use/ org/apache...
Date Mon, 27 Jul 2015 19:40:06 GMT
Author: luc
Date: Mon Jul 27 19:40:06 2015
New Revision: 959801

Log:
updated site after userguide improvement (2/4)

Modified:
    websites/production/commons/content/proper/commons-math/apidocs/deprecated-list.html
    websites/production/commons/content/proper/commons-math/apidocs/index-all.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/exception/class-use/MathIllegalArgumentException.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/fraction/BigFraction.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/geometry/euclidean/oned/class-use/Euclidean1D.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/geometry/euclidean/threed/PolyhedronsSet.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/geometry/euclidean/twod/Line.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/geometry/euclidean/twod/class-use/Euclidean2D.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/geometry/partitioning/class-use/Transform.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/ml/neuralnet/Neuron.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/ml/neuralnet/sofm/KohonenUpdateAction.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/ode/AbstractIntegrator.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/ode/events/EventState.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/special/Gamma.html
    websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/stat/inference/KolmogorovSmirnovTest.html
    websites/production/commons/content/proper/commons-math/apidocs/serialized-form.html
    websites/production/commons/content/proper/commons-math/apidocs/src-html/org/apache/commons/math3/fraction/BigFraction.html
    websites/production/commons/content/proper/commons-math/apidocs/src-html/org/apache/commons/math3/geometry/euclidean/threed/PolyhedronsSet.html
    websites/production/commons/content/proper/commons-math/apidocs/src-html/org/apache/commons/math3/geometry/euclidean/twod/Line.html
    websites/production/commons/content/proper/commons-math/apidocs/src-html/org/apache/commons/math3/ml/neuralnet/Neuron.html
    websites/production/commons/content/proper/commons-math/apidocs/src-html/org/apache/commons/math3/ml/neuralnet/sofm/KohonenUpdateAction.html
    websites/production/commons/content/proper/commons-math/apidocs/src-html/org/apache/commons/math3/ode/AbstractIntegrator.html
    websites/production/commons/content/proper/commons-math/apidocs/src-html/org/apache/commons/math3/ode/UnknownParameterException.html
    websites/production/commons/content/proper/commons-math/apidocs/src-html/org/apache/commons/math3/ode/events/EventState.html
    websites/production/commons/content/proper/commons-math/apidocs/src-html/org/apache/commons/math3/special/Gamma.html
    websites/production/commons/content/proper/commons-math/apidocs/src-html/org/apache/commons/math3/stat/inference/KolmogorovSmirnovTest.html
    websites/production/commons/content/proper/commons-math/apidocs/src-html/org/apache/commons/math3/util/ResizableDoubleArray.ExpansionMode.html
    websites/production/commons/content/proper/commons-math/apidocs/src-html/org/apache/commons/math3/util/ResizableDoubleArray.html

Modified: websites/production/commons/content/proper/commons-math/apidocs/deprecated-list.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/apidocs/deprecated-list.html (original)
+++ websites/production/commons/content/proper/commons-math/apidocs/deprecated-list.html Mon Jul 27 19:40:06 2015
@@ -1191,50 +1191,55 @@
 </td>
 </tr>
 <tr class="rowColor">
+<td class="colOne"><a href="org/apache/commons/math3/geometry/euclidean/twod/Line.html#getTransform(java.awt.geom.AffineTransform)">org.apache.commons.math3.geometry.euclidean.twod.Line.getTransform(AffineTransform)</a>
+<div class="block"><i>as of 3.6, replaced with <a href="org/apache/commons/math3/geometry/euclidean/twod/Line.html#getTransform(double,%20double,%20double,%20double,%20double,%20double)"><code>Line.getTransform(double, double, double, double, double, double)</code></a></i></div>
+</td>
+</tr>
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/geometry/euclidean/oned/Interval.html#getUpper()">org.apache.commons.math3.geometry.euclidean.oned.Interval.getUpper()</a>
 <div class="block"><i>as of 3.1, replaced by <a href="org/apache/commons/math3/geometry/euclidean/oned/Interval.html#getSup()"><code>Interval.getSup()</code></a></i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.html#getWeightRef()">org.apache.commons.math3.optimization.direct.BaseAbstractMultivariateVectorOptimizer.getWeightRef()</a>
 <div class="block"><i>As of 3.1.</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.html#guessParametersErrors()">org.apache.commons.math3.optimization.general.AbstractLeastSquaresOptimizer.guessParametersErrors()</a>
 <div class="block"><i>as of version 3.1, <a href="org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.html#computeSigma(double[],%20double)"><code>AbstractLeastSquaresOptimizer.computeSigma(double[],double)</code></a> should be used
  instead. It should be emphasized that <code>guessParametersErrors</code> and
  <code>computeSigma</code> are <em>not</em> strictly equivalent.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/geometry/partitioning/BSPTree.html#insertInTree(org.apache.commons.math3.geometry.partitioning.BSPTree,%20boolean)">org.apache.commons.math3.geometry.partitioning.BSPTree.insertInTree(BSPTree<S>, boolean)</a>
 <div class="block"><i>as of 3.4, replaced with <a href="org/apache/commons/math3/geometry/partitioning/BSPTree.html#insertInTree(org.apache.commons.math3.geometry.partitioning.BSPTree,%20boolean,%20org.apache.commons.math3.geometry.partitioning.BSPTree.VanishingCutHandler)"><code>BSPTree.insertInTree(BSPTree, boolean, VanishingCutHandler)</code></a></i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/distribution/RealDistribution.html#isSupportLowerBoundInclusive()">org.apache.commons.math3.distribution.RealDistribution.isSupportLowerBoundInclusive()</a>
 <div class="block"><i>to be removed in 4.0</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/distribution/RealDistribution.html#isSupportUpperBoundInclusive()">org.apache.commons.math3.distribution.RealDistribution.isSupportUpperBoundInclusive()</a>
 <div class="block"><i>to be removed in 4.0</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/analysis/solvers/LaguerreSolver.html#laguerre(double,%20double,%20double,%20double)">org.apache.commons.math3.analysis.solvers.LaguerreSolver.laguerre(double, double, double, double)</a>
 <div class="block"><i>This method should not be part of the public API: It will
  be made private in version 4.0.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/dfp/Dfp.html#log10()">org.apache.commons.math3.dfp.Dfp.log10()</a>
 <div class="block"><i>as of 3.2, replaced by <a href="org/apache/commons/math3/dfp/Dfp.html#intLog10()"><code>Dfp.intLog10()</code></a>, in 4.0 the return type
   will be changed to Dfp</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/special/Beta.html#logBeta(double,%20double,%20double,%20int)">org.apache.commons.math3.special.Beta.logBeta(double, double, double, int)</a>
 <div class="block"><i>as of version 3.1, this method is deprecated as the
  computation of the beta function is no longer iterative; it will be
@@ -1242,187 +1247,187 @@
  internally calls <a href="org/apache/commons/math3/special/Beta.html#logBeta(double,%20double)"><code>Beta.logBeta(double, double)</code></a>.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/transform/FastFourierTransformer.html#mdfft(java.lang.Object,%20org.apache.commons.math3.transform.TransformType)">org.apache.commons.math3.transform.FastFourierTransformer.mdfft(Object, TransformType)</a>
 <div class="block"><i>see MATH-736</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/analysis/FunctionUtils.html#multiply(org.apache.commons.math3.analysis.DifferentiableUnivariateFunction...)">org.apache.commons.math3.analysis.FunctionUtils.multiply(DifferentiableUnivariateFunction...)</a>
 <div class="block"><i>as of 3.1 replaced by <a href="org/apache/commons/math3/analysis/FunctionUtils.html#multiply(org.apache.commons.math3.analysis.differentiation.UnivariateDifferentiableFunction...)"><code>FunctionUtils.multiply(UnivariateDifferentiableFunction...)</code></a></i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/random/RandomDataImpl.html#nextInversionDeviate(org.apache.commons.math3.distribution.IntegerDistribution)">org.apache.commons.math3.random.RandomDataImpl.nextInversionDeviate(IntegerDistribution)</a>
 <div class="block"><i>use the distribution's sample() method</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/random/RandomDataImpl.html#nextInversionDeviate(org.apache.commons.math3.distribution.RealDistribution)">org.apache.commons.math3.random.RandomDataImpl.nextInversionDeviate(RealDistribution)</a>
 <div class="block"><i>use the distribution's sample() method</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.html#optimize(int,%20org.apache.commons.math3.analysis.DifferentiableMultivariateVectorFunction,%20double[],%20double[],%20double[])">org.apache.commons.math3.optimization.general.AbstractLeastSquaresOptimizer.optimize(int, DifferentiableMultivariateVectorFunction, double[], double[], double[])</a>
 <div class="block"><i>As of 3.1. Please use
  <a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.html#optimize(int,%20FUNC,%20org.apache.commons.math3.optimization.OptimizationData...)"><code>optimize(int,MultivariateDifferentiableVectorFunction,OptimizationData...)</code></a>
  instead.</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/BaseMultivariateVectorOptimizer.html#optimize(int,%20FUNC,%20double[],%20double[],%20double[])">org.apache.commons.math3.optimization.BaseMultivariateVectorOptimizer.optimize(int, FUNC, double[], double[], double[])</a>
 <div class="block"><i>As of 3.1. In 4.0, this will be replaced by the declaration
  corresponding to this <a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.html#optimize(int,%20FUNC,%20org.apache.commons.math3.optimization.OptimizationData...)"><code>method</code></a>.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.html#optimize(int,%20FUNC,%20double[],%20double[],%20double[])">org.apache.commons.math3.optimization.direct.BaseAbstractMultivariateVectorOptimizer.optimize(int, FUNC, double[], double[], double[])</a>
 <div class="block"><i>As of 3.1. Please use
  <a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.html#optimize(int,%20FUNC,%20org.apache.commons.math3.optimization.OptimizationData...)"><code>BaseAbstractMultivariateVectorOptimizer.optimize(int,MultivariateVectorFunction,OptimizationData[])</code></a>
  instead.</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/BaseMultivariateOptimizer.html#optimize(int,%20FUNC,%20org.apache.commons.math3.optimization.GoalType,%20double[])">org.apache.commons.math3.optimization.BaseMultivariateOptimizer.optimize(int, FUNC, GoalType, double[])</a>
 <div class="block"><i>As of 3.1. In 4.0, it will be replaced by the declaration
  corresponding to this <a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateOptimizer.html#optimize(int,%20FUNC,%20org.apache.commons.math3.optimization.GoalType,%20org.apache.commons.math3.optimization.OptimizationData...)"><code>method</code></a>.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateOptimizer.html#optimize(int,%20FUNC,%20org.apache.commons.math3.optimization.GoalType,%20double[])">org.apache.commons.math3.optimization.direct.BaseAbstractMultivariateOptimizer.optimize(int, FUNC, GoalType, double[])</a>
 <div class="block"><i>As of 3.1. Please use
  <a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateOptimizer.html#optimize(int,%20FUNC,%20org.apache.commons.math3.optimization.GoalType,%20org.apache.commons.math3.optimization.OptimizationData...)"><code>BaseAbstractMultivariateOptimizer.optimize(int,MultivariateFunction,GoalType,OptimizationData[])</code></a>
  instead.</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.html#optimize(int,%20org.apache.commons.math3.analysis.differentiation.MultivariateDifferentiableVectorFunction,%20double[],%20double[],%20double[])">org.apache.commons.math3.optimization.general.AbstractLeastSquaresOptimizer.optimize(int, MultivariateDifferentiableVectorFunction, double[], double[], double[])</a>
 <div class="block"><i>As of 3.1. Please use
  <a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.html#optimize(int,%20FUNC,%20org.apache.commons.math3.optimization.OptimizationData...)"><code>optimize(int,MultivariateDifferentiableVectorFunction,OptimizationData...)</code></a>
  instead.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.html#optimizeInternal(int,%20FUNC,%20double[],%20double[],%20double[])">org.apache.commons.math3.optimization.direct.BaseAbstractMultivariateVectorOptimizer.optimizeInternal(int, FUNC, double[], double[], double[])</a>
 <div class="block"><i>As of 3.1. Please use
  <a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.html#optimizeInternal(int,%20FUNC,%20org.apache.commons.math3.optimization.OptimizationData...)"><code>BaseAbstractMultivariateVectorOptimizer.optimizeInternal(int,MultivariateVectorFunction,OptimizationData[])</code></a>
  instead.</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateOptimizer.html#optimizeInternal(int,%20FUNC,%20org.apache.commons.math3.optimization.GoalType,%20double[])">org.apache.commons.math3.optimization.direct.BaseAbstractMultivariateOptimizer.optimizeInternal(int, FUNC, GoalType, double[])</a>
 <div class="block"><i>As of 3.1. Please use
  <a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateOptimizer.html#optimize(int,%20FUNC,%20org.apache.commons.math3.optimization.GoalType,%20org.apache.commons.math3.optimization.OptimizationData...)"><code>BaseAbstractMultivariateOptimizer.optimize(int,MultivariateFunction,GoalType,OptimizationData[])</code></a>
  instead.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/general/AbstractDifferentiableOptimizer.html#optimizeInternal(int,%20org.apache.commons.math3.analysis.differentiation.MultivariateDifferentiableFunction,%20org.apache.commons.math3.optimization.GoalType,%20double[])">org.apache.commons.math3.optimization.general.AbstractDifferentiableOptimizer.optimizeInternal(int, MultivariateDifferentiableFunction, GoalType, double[])</a>
 <div class="block"><i>In 3.1. Please use
  <a href="org/apache/commons/math3/optimization/general/AbstractDifferentiableOptimizer.html#optimizeInternal(int,%20org.apache.commons.math3.analysis.differentiation.MultivariateDifferentiableFunction,%20org.apache.commons.math3.optimization.GoalType,%20org.apache.commons.math3.optimization.OptimizationData...)"><code>AbstractDifferentiableOptimizer.optimizeInternal(int,MultivariateDifferentiableFunction,GoalType,OptimizationData[])</code></a>
  instead.</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.html#optimizeInternal(int,%20org.apache.commons.math3.analysis.differentiation.MultivariateDifferentiableVectorFunction,%20org.apache.commons.math3.optimization.OptimizationData...)">org.apache.commons.math3.optimization.general.AbstractLeastSquaresOptimizer.optimizeInternal(int, MultivariateDifferentiableVectorFunction, OptimizationData...)</a>
 <div class="block"><i>As of 3.1. Override is necessary only until this class's generic
  argument is changed to <code>MultivariateDifferentiableVectorFunction</code>.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/util/ArithmeticUtils.html#pow(int,%20long)">org.apache.commons.math3.util.ArithmeticUtils.pow(int, long)</a>
 <div class="block"><i>As of 3.3. Please use <a href="org/apache/commons/math3/util/ArithmeticUtils.html#pow(int,%20int)"><code>ArithmeticUtils.pow(int,int)</code></a> instead.</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/util/ArithmeticUtils.html#pow(long,%20long)">org.apache.commons.math3.util.ArithmeticUtils.pow(long, long)</a>
 <div class="block"><i>As of 3.3. Please use <a href="org/apache/commons/math3/util/ArithmeticUtils.html#pow(long,%20int)"><code>ArithmeticUtils.pow(long,int)</code></a> instead.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/genetics/ListPopulation.html#setChromosomes(java.util.List)">org.apache.commons.math3.genetics.ListPopulation.setChromosomes(List<Chromosome>)</a>
 <div class="block"><i>use <a href="org/apache/commons/math3/genetics/ListPopulation.html#addChromosomes(java.util.Collection)"><code>ListPopulation.addChromosomes(Collection)</code></a> instead</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/util/ResizableDoubleArray.html#setContractionCriteria(float)">org.apache.commons.math3.util.ResizableDoubleArray.setContractionCriteria(float)</a>
 <div class="block"><i>As of 3.1 (to be removed in 4.0 as field will become "final").</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/util/ResizableDoubleArray.html#setExpansionFactor(float)">org.apache.commons.math3.util.ResizableDoubleArray.setExpansionFactor(float)</a>
 <div class="block"><i>As of 3.1 (to be removed in 4.0 as field will become "final").</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/util/ResizableDoubleArray.html#setExpansionMode(int)">org.apache.commons.math3.util.ResizableDoubleArray.setExpansionMode(int)</a>
 <div class="block"><i>As of 3.1. Please use <a href="org/apache/commons/math3/util/ResizableDoubleArray.html#setExpansionMode(org.apache.commons.math3.util.ResizableDoubleArray.ExpansionMode)"><code>ResizableDoubleArray.setExpansionMode(ExpansionMode)</code></a> instead.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/util/ResizableDoubleArray.html#setExpansionMode(org.apache.commons.math3.util.ResizableDoubleArray.ExpansionMode)">org.apache.commons.math3.util.ResizableDoubleArray.setExpansionMode(ResizableDoubleArray.ExpansionMode)</a>
 <div class="block"><i>As of 3.1 (to be removed in 4.0 as field will become "final").</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/util/ResizableDoubleArray.html#setInitialCapacity(int)">org.apache.commons.math3.util.ResizableDoubleArray.setInitialCapacity(int)</a>
 <div class="block"><i>As of 3.1, this is a no-op.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/direct/SimplexOptimizer.html#setSimplex(org.apache.commons.math3.optimization.direct.AbstractSimplex)">org.apache.commons.math3.optimization.direct.SimplexOptimizer.setSimplex(AbstractSimplex)</a>
 <div class="block"><i>As of 3.1. The initial simplex can now be passed as an
  argument of the <a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateOptimizer.html#optimize(int,%20FUNC,%20org.apache.commons.math3.optimization.GoalType,%20org.apache.commons.math3.optimization.OptimizationData...)"><code>BaseAbstractMultivariateOptimizer.optimize(int,MultivariateFunction,GoalType,OptimizationData[])</code></a>
  method.</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/util/ResizableDoubleArray.html#start()">org.apache.commons.math3.util.ResizableDoubleArray.start()</a>
 <div class="block"><i>As of 3.1.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/util/ArithmeticUtils.html#stirlingS2(int,%20int)">org.apache.commons.math3.util.ArithmeticUtils.stirlingS2(int, int)</a>
 <div class="block"><i>use <a href="org/apache/commons/math3/util/CombinatoricsUtils.html#stirlingS2(int,%20int)"><code>CombinatoricsUtils.stirlingS2(int, int)</code></a></i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/analysis/FunctionUtils.html#toDifferentiableMultivariateFunction(org.apache.commons.math3.analysis.differentiation.MultivariateDifferentiableFunction)">org.apache.commons.math3.analysis.FunctionUtils.toDifferentiableMultivariateFunction(MultivariateDifferentiableFunction)</a>
 <div class="block"><i>this conversion method is temporary in version 3.1, as the <a href="org/apache/commons/math3/analysis/DifferentiableMultivariateFunction.html" title="interface in org.apache.commons.math3.analysis"><code>DifferentiableMultivariateFunction</code></a> interface itself is deprecated</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/analysis/FunctionUtils.html#toDifferentiableMultivariateVectorFunction(org.apache.commons.math3.analysis.differentiation.MultivariateDifferentiableVectorFunction)">org.apache.commons.math3.analysis.FunctionUtils.toDifferentiableMultivariateVectorFunction(MultivariateDifferentiableVectorFunction)</a>
 <div class="block"><i>this conversion method is temporary in version 3.1, as the <a href="org/apache/commons/math3/analysis/DifferentiableMultivariateVectorFunction.html" title="interface in org.apache.commons.math3.analysis"><code>DifferentiableMultivariateVectorFunction</code></a> interface itself is deprecated</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/analysis/FunctionUtils.html#toDifferentiableUnivariateFunction(org.apache.commons.math3.analysis.differentiation.UnivariateDifferentiableFunction)">org.apache.commons.math3.analysis.FunctionUtils.toDifferentiableUnivariateFunction(UnivariateDifferentiableFunction)</a>
 <div class="block"><i>this conversion method is temporary in version 3.1, as the <a href="org/apache/commons/math3/analysis/DifferentiableUnivariateFunction.html" title="interface in org.apache.commons.math3.analysis"><code>DifferentiableUnivariateFunction</code></a> interface itself is deprecated</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/analysis/FunctionUtils.html#toMultivariateDifferentiableFunction(org.apache.commons.math3.analysis.DifferentiableMultivariateFunction)">org.apache.commons.math3.analysis.FunctionUtils.toMultivariateDifferentiableFunction(DifferentiableMultivariateFunction)</a>
 <div class="block"><i>this conversion method is temporary in version 3.1, as the <a href="org/apache/commons/math3/analysis/DifferentiableMultivariateFunction.html" title="interface in org.apache.commons.math3.analysis"><code>DifferentiableMultivariateFunction</code></a> interface itself is deprecated</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/analysis/FunctionUtils.html#toMultivariateDifferentiableVectorFunction(org.apache.commons.math3.analysis.DifferentiableMultivariateVectorFunction)">org.apache.commons.math3.analysis.FunctionUtils.toMultivariateDifferentiableVectorFunction(DifferentiableMultivariateVectorFunction)</a>
 <div class="block"><i>this conversion method is temporary in version 3.1, as the <a href="org/apache/commons/math3/analysis/DifferentiableMultivariateFunction.html" title="interface in org.apache.commons.math3.analysis"><code>DifferentiableMultivariateFunction</code></a> interface itself is deprecated</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/analysis/FunctionUtils.html#toUnivariateDifferential(org.apache.commons.math3.analysis.DifferentiableUnivariateFunction)">org.apache.commons.math3.analysis.FunctionUtils.toUnivariateDifferential(DifferentiableUnivariateFunction)</a>
 <div class="block"><i>this conversion method is temporary in version 3.1, as the <a href="org/apache/commons/math3/analysis/DifferentiableUnivariateFunction.html" title="interface in org.apache.commons.math3.analysis"><code>DifferentiableUnivariateFunction</code></a> interface itself is deprecated</i></div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.html#updateJacobian()">org.apache.commons.math3.optimization.general.AbstractLeastSquaresOptimizer.updateJacobian()</a>
 <div class="block"><i>As of 3.1. Please use <a href="org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.html#computeWeightedJacobian(double[])"><code>AbstractLeastSquaresOptimizer.computeWeightedJacobian(double[])</code></a>
  instead.</i></div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colOne"><a href="org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.html#updateResidualsAndCost()">org.apache.commons.math3.optimization.general.AbstractLeastSquaresOptimizer.updateResidualsAndCost()</a>
 <div class="block"><i>As of 3.1. Please use <a href="org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.html#computeResiduals(double[])"><code>AbstractLeastSquaresOptimizer.computeResiduals(double[])</code></a>,
  <a href="org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.html#computeObjectiveValue(double[])"><code>BaseAbstractMultivariateVectorOptimizer.computeObjectiveValue(double[])</code></a>, <a href="org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.html#computeCost(double[])"><code>AbstractLeastSquaresOptimizer.computeCost(double[])</code></a>

Modified: websites/production/commons/content/proper/commons-math/apidocs/index-all.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/apidocs/index-all.html (original)
+++ websites/production/commons/content/proper/commons-math/apidocs/index-all.html Mon Jul 27 19:40:06 2015
@@ -13792,6 +13792,12 @@
 <div class="block">Get the number of steps of the method
  (excluding the one being computed).</div>
 </dd>
+<dt><span class="strong"><a href="./org/apache/commons/math3/ml/neuralnet/Neuron.html#getNumberOfAttemptedUpdates()">getNumberOfAttemptedUpdates()</a></span> - Method in class org.apache.commons.math3.ml.neuralnet.<a href="./org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a></dt>
+<dd>
+<div class="block">Retrieves the number of calls to the
+ <a href="./org/apache/commons/math3/ml/neuralnet/Neuron.html#compareAndSetFeatures(double[],%20double[])"><code>compareAndSetFeatures</code></a>
+ method.</div>
+</dd>
 <dt><span class="strong"><a href="./org/apache/commons/math3/ml/neuralnet/sofm/KohonenUpdateAction.html#getNumberOfCalls()">getNumberOfCalls()</a></span> - Method in class org.apache.commons.math3.ml.neuralnet.sofm.<a href="./org/apache/commons/math3/ml/neuralnet/sofm/KohonenUpdateAction.html" title="class in org.apache.commons.math3.ml.neuralnet.sofm">KohonenUpdateAction</a></dt>
 <dd>
 <div class="block">Retrieves the number of calls to the <a href="./org/apache/commons/math3/ml/neuralnet/sofm/KohonenUpdateAction.html#update(org.apache.commons.math3.ml.neuralnet.Network,%20double[])"><code>update</code></a>
@@ -13827,6 +13833,12 @@
 <dd>
 <div class="block">Access the number of successes for this distribution.</div>
 </dd>
+<dt><span class="strong"><a href="./org/apache/commons/math3/ml/neuralnet/Neuron.html#getNumberOfSuccessfulUpdates()">getNumberOfSuccessfulUpdates()</a></span> - Method in class org.apache.commons.math3.ml.neuralnet.<a href="./org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a></dt>
+<dd>
+<div class="block">Retrieves the number of successful calls to the
+ <a href="./org/apache/commons/math3/ml/neuralnet/Neuron.html#compareAndSetFeatures(double[],%20double[])"><code>compareAndSetFeatures</code></a>
+ method.</div>
+</dd>
 <dt><span class="strong"><a href="./org/apache/commons/math3/distribution/BinomialDistribution.html#getNumberOfTrials()">getNumberOfTrials()</a></span> - Method in class org.apache.commons.math3.distribution.<a href="./org/apache/commons/math3/distribution/BinomialDistribution.html" title="class in org.apache.commons.math3.distribution">BinomialDistribution</a></dt>
 <dd>
 <div class="block">Access the number of trials for this distribution.</div>
@@ -16716,6 +16728,12 @@
 </dd>
 <dt><span class="strong"><a href="./org/apache/commons/math3/geometry/euclidean/twod/Line.html#getTransform(java.awt.geom.AffineTransform)">getTransform(AffineTransform)</a></span> - Static method in class org.apache.commons.math3.geometry.euclidean.twod.<a href="./org/apache/commons/math3/geometry/euclidean/twod/Line.html" title="class in org.apache.commons.math3.geometry.euclidean.twod">Line</a></dt>
 <dd>
+<div class="block"><span class="strong">Deprecated.</span>
+<div class="block"><i>as of 3.6, replaced with <a href="./org/apache/commons/math3/geometry/euclidean/twod/Line.html#getTransform(double,%20double,%20double,%20double,%20double,%20double)"><code>Line.getTransform(double, double, double, double, double, double)</code></a></i></div>
+</div>
+</dd>
+<dt><span class="strong"><a href="./org/apache/commons/math3/geometry/euclidean/twod/Line.html#getTransform(double,%20double,%20double,%20double,%20double,%20double)">getTransform(double, double, double, double, double, double)</a></span> - Static method in class org.apache.commons.math3.geometry.euclidean.twod.<a href="./org/apache/commons/math3/geometry/euclidean/twod/Line.html" title="class in org.apache.commons.math3.geometry.euclidean.twod">Line</a></dt>
+<dd>
 <div class="block">Get a <a href="./org/apache/commons/math3/geometry/partitioning/Transform.html" title="interface in org.apache.commons.math3.geometry.partitioning"><code>Transform</code></a> embedding an affine transform.</div>
 </dd>
 <dt><span class="strong"><a href="./org/apache/commons/math3/geometry/spherical/twod/Circle.html#getTransform(org.apache.commons.math3.geometry.euclidean.threed.Rotation)">getTransform(Rotation)</a></span> - Static method in class org.apache.commons.math3.geometry.spherical.twod.<a href="./org/apache/commons/math3/geometry/spherical/twod/Circle.html" title="class in org.apache.commons.math3.geometry.spherical.twod">Circle</a></dt>

Modified: websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/exception/class-use/MathIllegalArgumentException.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/exception/class-use/MathIllegalArgumentException.html (original)
+++ websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/exception/class-use/MathIllegalArgumentException.html Mon Jul 27 19:40:06 2015
@@ -859,6 +859,19 @@
 <tr class="altColor">
 <td class="colFirst"><code>static <a href="../../../../../../org/apache/commons/math3/geometry/partitioning/Transform.html" title="interface in org.apache.commons.math3.geometry.partitioning">Transform</a>&lt;<a href="../../../../../../org/apache/commons/math3/geometry/euclidean/twod/Euclidean2D.html" title="class in org.apache.commons.math3.geometry.euclidean.twod">Euclidean2D</a>,<a href="../../../../../../org/apache/commons/math3/geometry/euclidean/oned/Euclidean1D.html" title="class in org.apache.commons.math3.geometry.euclidean.oned">Euclidean1D</a>&gt;</code></td>
 <td class="colLast"><span class="strong">Line.</span><code><strong><a href="../../../../../../org/apache/commons/math3/geometry/euclidean/twod/Line.html#getTransform(java.awt.geom.AffineTransform)">getTransform</a></strong>(<a href="http://docs.oracle.com/javase/7/docs/api/java/awt/geom/AffineTransform.html?is-external=true" title="class or interface in java.awt.geom">AffineTransform</a>&nbsp;transform)</code>
+<div class="block"><strong>Deprecated.</strong>&nbsp;
+<div class="block"><i>as of 3.6, replaced with <a href="../../../../../../org/apache/commons/math3/geometry/euclidean/twod/Line.html#getTransform(double,%20double,%20double,%20double,%20double,%20double)"><code>Line.getTransform(double, double, double, double, double, double)</code></a></i></div>
+</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><code>static <a href="../../../../../../org/apache/commons/math3/geometry/partitioning/Transform.html" title="interface in org.apache.commons.math3.geometry.partitioning">Transform</a>&lt;<a href="../../../../../../org/apache/commons/math3/geometry/euclidean/twod/Euclidean2D.html" title="class in org.apache.commons.math3.geometry.euclidean.twod">Euclidean2D</a>,<a href="../../../../../../org/apache/commons/math3/geometry/euclidean/oned/Euclidean1D.html" title="class in org.apache.commons.math3.geometry.euclidean.oned">Euclidean1D</a>&gt;</code></td>
+<td class="colLast"><span class="strong">Line.</span><code><strong><a href="../../../../../../org/apache/commons/math3/geometry/euclidean/twod/Line.html#getTransform(double,%20double,%20double,%20double,%20double,%20double)">getTransform</a></strong>(double&nbsp;cXX,
+                        double&nbsp;cYX,
+                        double&nbsp;cXY,
+                        double&nbsp;cYY,
+                        double&nbsp;cX1,
+                        double&nbsp;cY1)</code>
 <div class="block">Get a <a href="../../../../../../org/apache/commons/math3/geometry/partitioning/Transform.html" title="interface in org.apache.commons.math3.geometry.partitioning"><code>Transform</code></a> embedding an affine transform.</div>
 </td>
 </tr>

Modified: websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/fraction/BigFraction.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/fraction/BigFraction.html (original)
+++ websites/production/commons/content/proper/commons-math/apidocs/org/apache/commons/math3/fraction/BigFraction.html Mon Jul 27 19:40:06 2015
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+<pre>public&nbsp;<a href="../../../../../org/apache/commons/math3/fraction/BigFraction.html" title="class in org.apache.commons.math3.fraction">BigFraction</a>&nbsp;<a href="../../../../../src-html/org/apache/commons/math3/fraction/BigFraction.html#line.491">add</a>(int&nbsp;i)</pre>
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+<pre>public&nbsp;<a href="../../../../../org/apache/commons/math3/fraction/BigFraction.html" title="class in org.apache.commons.math3.fraction">BigFraction</a>&nbsp;<a href="../../../../../src-html/org/apache/commons/math3/fraction/BigFraction.html#line.505">add</a>(long&nbsp;l)</pre>
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+<pre>public&nbsp;<a href="../../../../../org/apache/commons/math3/fraction/BigFraction.html" title="class in org.apache.commons.math3.fraction">BigFraction</a>&nbsp;<a href="../../../../../src-html/org/apache/commons/math3/fraction/BigFraction.html#line.521">add</a>(<a href="../../../../../org/apache/commons/math3/fraction/BigFraction.html" title="class in org.apache.commons.math3.fraction">BigFraction</a>&nbsp;fraction)</pre>
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+<pre>public&nbsp;<a href="http://docs.oracle.com/javase/7/docs/api/java/math/BigDecimal.html?is-external=true" title="class or interface in java.math">BigDecimal</a>&nbsp;<a href="../../../../../src-html/org/apache/commons/math3/fraction/BigFraction.html#line.563">bigDecimalValue</a>()</pre>
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+<pre>public&nbsp;<a href="http://docs.oracle.com/javase/7/docs/api/java/math/BigDecimal.html?is-external=true" title="class or interface in java.math">BigDecimal</a>&nbsp;<a href="../../../../../src-html/org/apache/commons/math3/fraction/BigFraction.html#line.582">bigDecimalValue</a>(int&nbsp;roundingMode)</pre>
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+</tr>
+<tr class="altColor">
+<td class="colFirst"><code>static <a href="../../../../../../../../org/apache/commons/math3/geometry/partitioning/Transform.html" title="interface in org.apache.commons.math3.geometry.partitioning">Transform</a>&lt;<a href="../../../../../../../../org/apache/commons/math3/geometry/euclidean/twod/Euclidean2D.html" title="class in org.apache.commons.math3.geometry.euclidean.twod">Euclidean2D</a>,<a href="../../../../../../../../org/apache/commons/math3/geometry/euclidean/oned/Euclidean1D.html" title="class in org.apache.commons.math3.geometry.euclidean.oned">Euclidean1D</a>&gt;</code></td>
+<td class="colLast"><span class="strong">Line.</span><code><strong><a href="../../../../../../../../org/apache/commons/math3/geometry/euclidean/twod/Line.html#getTransform(double,%20double,%20double,%20double,%20double,%20double)">getTransform</a></strong>(double&nbsp;cXX,
+                        double&nbsp;cYX,
+                        double&nbsp;cXY,
+                        double&nbsp;cYY,
+                        double&nbsp;cX1,
+                        double&nbsp;cY1)</code>
 <div class="block">Get a <a href="../../../../../../../../org/apache/commons/math3/geometry/partitioning/Transform.html" title="interface in org.apache.commons.math3.geometry.partitioning"><code>Transform</code></a> embedding an affine transform.</div>
 </td>
 </tr>



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