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From l..@apache.org
Subject svn commit: r951633 [42/49] - in /websites/production/commons/content/proper/commons-math: xref-test/ xref-test/org/apache/commons/math3/ xref-test/org/apache/commons/math3/analysis/ xref-test/org/apache/commons/math3/analysis/differentiation/ xref-tes...
Date Sun, 17 May 2015 17:05:54 GMT
Modified: websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/clustering/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/clustering/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/clustering/package-frame.html Sun May 17 17:05:50 2015
@@ -1,45 +1,45 @@
-
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xml:lang="en" lang="en">
-	<head>
-		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.stat.clustering</title>
-		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
-	</head>
-	<body>
-
-		<h3>
-        	<a href="package-summary.html" target="classFrame">org.apache.commons.math3.stat.clustering</a>
-      	</h3>
-
-      	<h3>Classes</h3>
-
-      	<ul>
-      		          	<li>
-            	<a href="Cluster.html" target="classFrame">Cluster</a>
-          	</li>
-          	          	<li>
-            	<a href="Clusterable.html" target="classFrame">Clusterable</a>
-          	</li>
-          	          	<li>
-            	<a href="DBSCANClusterer.html" target="classFrame">DBSCANClusterer</a>
-          	</li>
-          	          	<li>
-            	<a href="KMeansPlusPlusClusterer.html" target="classFrame">EmptyClusterStrategy</a>
-          	</li>
-          	          	<li>
-            	<a href="EuclideanDoublePoint.html" target="classFrame">EuclideanDoublePoint</a>
-          	</li>
-          	          	<li>
-            	<a href="EuclideanIntegerPoint.html" target="classFrame">EuclideanIntegerPoint</a>
-          	</li>
-          	          	<li>
-            	<a href="KMeansPlusPlusClusterer.html" target="classFrame">KMeansPlusPlusClusterer</a>
-          	</li>
-          	          	<li>
-            	<a href="DBSCANClusterer.html" target="classFrame">PointStatus</a>
-          	</li>
-          	      	</ul>
-
-	</body>
+
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xml:lang="en" lang="en">
+	<head>
+		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
+		<title>Apache Commons Math 3.6-SNAPSHOT Reference Package org.apache.commons.math3.stat.clustering</title>
+		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
+	</head>
+	<body>
+
+		<h3>
+        	<a href="package-summary.html" target="classFrame">org.apache.commons.math3.stat.clustering</a>
+      	</h3>
+
+      	<h3>Classes</h3>
+
+      	<ul>
+      		          	<li>
+            	<a href="Cluster.html" target="classFrame">Cluster</a>
+          	</li>
+          	          	<li>
+            	<a href="Clusterable.html" target="classFrame">Clusterable</a>
+          	</li>
+          	          	<li>
+            	<a href="DBSCANClusterer.html" target="classFrame">DBSCANClusterer</a>
+          	</li>
+          	          	<li>
+            	<a href="KMeansPlusPlusClusterer.html" target="classFrame">EmptyClusterStrategy</a>
+          	</li>
+          	          	<li>
+            	<a href="EuclideanDoublePoint.html" target="classFrame">EuclideanDoublePoint</a>
+          	</li>
+          	          	<li>
+            	<a href="EuclideanIntegerPoint.html" target="classFrame">EuclideanIntegerPoint</a>
+          	</li>
+          	          	<li>
+            	<a href="KMeansPlusPlusClusterer.html" target="classFrame">KMeansPlusPlusClusterer</a>
+          	</li>
+          	          	<li>
+            	<a href="DBSCANClusterer.html" target="classFrame">PointStatus</a>
+          	</li>
+          	      	</ul>
+
+	</body>
 </html>
\ No newline at end of file

Modified: websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/clustering/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/clustering/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/clustering/package-summary.html Sun May 17 17:05:50 2015
@@ -1,104 +1,104 @@
-
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xml:lang="en" lang="en">
-	<head>
-		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.stat.clustering</title>
-		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
-	</head>
-	<body>
-		      	<div class="overview">
-        	<ul>
-          		<li>
-            		<a href="../../../../../../overview-summary.html">Overview</a>
-          		</li>
-          		<li class="selected">Package</li>
-        	</ul>
-      	</div>
-      	<div class="framenoframe">
-        	<ul>
-          		<li>
-            		<a href="../../../../../../index.html" target="_top">FRAMES</a>
-          		</li>
-          		<li>
-            		<a href="package-summary.html" target="_top">NO FRAMES</a>
-          		</li>
-        	</ul>
-      	</div>
-		
-		      	<h2>Package org.apache.commons.math3.stat.clustering</h2>
-
-		<table class="summary">
-        	<thead>
-          		<tr>
-            		<th>Class Summary</th>
-          		</tr>
-        	</thead>
-        	<tbody>
-        		            	<tr>
-              		<td>
-                		<a href="Cluster.html" target="classFrame">Cluster</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="Clusterable.html" target="classFrame">Clusterable</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="DBSCANClusterer.html" target="classFrame">DBSCANClusterer</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="KMeansPlusPlusClusterer.html" target="classFrame">EmptyClusterStrategy</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="EuclideanDoublePoint.html" target="classFrame">EuclideanDoublePoint</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="EuclideanIntegerPoint.html" target="classFrame">EuclideanIntegerPoint</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="KMeansPlusPlusClusterer.html" target="classFrame">KMeansPlusPlusClusterer</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="DBSCANClusterer.html" target="classFrame">PointStatus</a>
-              		</td>
-            	</tr>
-				        	</tbody>
-      	</table>
-		
-		      	<div class="overview">
-        	<ul>
-          		<li>
-            		<a href="../../../../../../overview-summary.html">Overview</a>
-          		</li>
-          		<li class="selected">Package</li>
-        	</ul>
-      	</div>
-      	<div class="framenoframe">
-        	<ul>
-          		<li>
-            		<a href="../../../../../../index.html" target="_top">FRAMES</a>
-          		</li>
-          		<li>
-            		<a href="package-summary.html" target="_top">NO FRAMES</a>
-          		</li>
-        	</ul>
-      	</div>
-				<hr />
-		<div id="footer">
-			Copyright &#169; 2003&#x2013;2015 <a href="http://www.apache.org/">The Apache Software Foundation</a>. All rights reserved.
-		</div>
-	</body>
+
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xml:lang="en" lang="en">
+	<head>
+		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
+		<title>Apache Commons Math 3.6-SNAPSHOT Reference Package org.apache.commons.math3.stat.clustering</title>
+		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
+	</head>
+	<body>
+		      	<div class="overview">
+        	<ul>
+          		<li>
+            		<a href="../../../../../../overview-summary.html">Overview</a>
+          		</li>
+          		<li class="selected">Package</li>
+        	</ul>
+      	</div>
+      	<div class="framenoframe">
+        	<ul>
+          		<li>
+            		<a href="../../../../../../index.html" target="_top">FRAMES</a>
+          		</li>
+          		<li>
+            		<a href="package-summary.html" target="_top">NO FRAMES</a>
+          		</li>
+        	</ul>
+      	</div>
+		
+		      	<h2>Package org.apache.commons.math3.stat.clustering</h2>
+
+		<table class="summary">
+        	<thead>
+          		<tr>
+            		<th>Class Summary</th>
+          		</tr>
+        	</thead>
+        	<tbody>
+        		            	<tr>
+              		<td>
+                		<a href="Cluster.html" target="classFrame">Cluster</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="Clusterable.html" target="classFrame">Clusterable</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="DBSCANClusterer.html" target="classFrame">DBSCANClusterer</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="KMeansPlusPlusClusterer.html" target="classFrame">EmptyClusterStrategy</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="EuclideanDoublePoint.html" target="classFrame">EuclideanDoublePoint</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="EuclideanIntegerPoint.html" target="classFrame">EuclideanIntegerPoint</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="KMeansPlusPlusClusterer.html" target="classFrame">KMeansPlusPlusClusterer</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="DBSCANClusterer.html" target="classFrame">PointStatus</a>
+              		</td>
+            	</tr>
+				        	</tbody>
+      	</table>
+		
+		      	<div class="overview">
+        	<ul>
+          		<li>
+            		<a href="../../../../../../overview-summary.html">Overview</a>
+          		</li>
+          		<li class="selected">Package</li>
+        	</ul>
+      	</div>
+      	<div class="framenoframe">
+        	<ul>
+          		<li>
+            		<a href="../../../../../../index.html" target="_top">FRAMES</a>
+          		</li>
+          		<li>
+            		<a href="package-summary.html" target="_top">NO FRAMES</a>
+          		</li>
+        	</ul>
+      	</div>
+				<hr />
+		<div id="footer">
+			Copyright &#169; 2003&#x2013;2015 <a href="http://www.apache.org/">The Apache Software Foundation</a>. All rights reserved.
+		</div>
+	</body>
 </html>
\ No newline at end of file

Modified: websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/correlation/SpearmansCorrelation.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/correlation/SpearmansCorrelation.html (original)
+++ websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/correlation/SpearmansCorrelation.html Sun May 17 17:05:50 2015
@@ -114,157 +114,160 @@
 <a class="jxr_linenumber" name="L106" href="#L106">106</a> <em class="jxr_javadoccomment">     * Calculate the Spearman Rank Correlation Matrix.</em>
 <a class="jxr_linenumber" name="L107" href="#L107">107</a> <em class="jxr_javadoccomment">     *</em>
 <a class="jxr_linenumber" name="L108" href="#L108">108</a> <em class="jxr_javadoccomment">     * @return Spearman Rank Correlation Matrix</em>
-<a class="jxr_linenumber" name="L109" href="#L109">109</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L110" href="#L110">110</a>     <strong class="jxr_keyword">public</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> getCorrelationMatrix() {
-<a class="jxr_linenumber" name="L111" href="#L111">111</a>         <strong class="jxr_keyword">return</strong> rankCorrelation.getCorrelationMatrix();
-<a class="jxr_linenumber" name="L112" href="#L112">112</a>     }
-<a class="jxr_linenumber" name="L113" href="#L113">113</a> 
-<a class="jxr_linenumber" name="L114" href="#L114">114</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L115" href="#L115">115</a> <em class="jxr_javadoccomment">     * Returns a {@link PearsonsCorrelation} instance constructed from the</em>
-<a class="jxr_linenumber" name="L116" href="#L116">116</a> <em class="jxr_javadoccomment">     * ranked input data. That is,</em>
-<a class="jxr_linenumber" name="L117" href="#L117">117</a> <em class="jxr_javadoccomment">     * &lt;code&gt;new SpearmansCorrelation(matrix).getRankCorrelation()&lt;/code&gt;</em>
-<a class="jxr_linenumber" name="L118" href="#L118">118</a> <em class="jxr_javadoccomment">     * is equivalent to</em>
-<a class="jxr_linenumber" name="L119" href="#L119">119</a> <em class="jxr_javadoccomment">     * &lt;code&gt;new PearsonsCorrelation(rankTransform(matrix))&lt;/code&gt; where</em>
-<a class="jxr_linenumber" name="L120" href="#L120">120</a> <em class="jxr_javadoccomment">     * &lt;code&gt;rankTransform(matrix)&lt;/code&gt; is the result of applying the</em>
-<a class="jxr_linenumber" name="L121" href="#L121">121</a> <em class="jxr_javadoccomment">     * configured &lt;code&gt;RankingAlgorithm&lt;/code&gt; to each of the columns of</em>
-<a class="jxr_linenumber" name="L122" href="#L122">122</a> <em class="jxr_javadoccomment">     * &lt;code&gt;matrix.&lt;/code&gt;</em>
-<a class="jxr_linenumber" name="L123" href="#L123">123</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L124" href="#L124">124</a> <em class="jxr_javadoccomment">     * @return PearsonsCorrelation among ranked column data</em>
-<a class="jxr_linenumber" name="L125" href="#L125">125</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L126" href="#L126">126</a>     <strong class="jxr_keyword">public</strong> <a href="../../../../../../org/apache/commons/math3/stat/correlation/PearsonsCorrelation.html">PearsonsCorrelation</a> getRankCorrelation() {
-<a class="jxr_linenumber" name="L127" href="#L127">127</a>         <strong class="jxr_keyword">return</strong> rankCorrelation;
-<a class="jxr_linenumber" name="L128" href="#L128">128</a>     }
-<a class="jxr_linenumber" name="L129" href="#L129">129</a> 
-<a class="jxr_linenumber" name="L130" href="#L130">130</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L131" href="#L131">131</a> <em class="jxr_javadoccomment">     * Computes the Spearman's rank correlation matrix for the columns of the</em>
-<a class="jxr_linenumber" name="L132" href="#L132">132</a> <em class="jxr_javadoccomment">     * input matrix.</em>
-<a class="jxr_linenumber" name="L133" href="#L133">133</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L134" href="#L134">134</a> <em class="jxr_javadoccomment">     * @param matrix matrix with columns representing variables to correlate</em>
-<a class="jxr_linenumber" name="L135" href="#L135">135</a> <em class="jxr_javadoccomment">     * @return correlation matrix</em>
-<a class="jxr_linenumber" name="L136" href="#L136">136</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L137" href="#L137">137</a>     <strong class="jxr_keyword">public</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> computeCorrelationMatrix(<strong class="jxr_keyword">final</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> matrix) {
-<a class="jxr_linenumber" name="L138" href="#L138">138</a>         <strong class="jxr_keyword">final</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> matrixCopy = rankTransform(matrix);
-<a class="jxr_linenumber" name="L139" href="#L139">139</a>         <strong class="jxr_keyword">return</strong> <strong class="jxr_keyword">new</strong> <a href="../../../../../../org/apache/commons/math3/stat/correlation/PearsonsCorrelation.html">PearsonsCorrelation</a>().computeCorrelationMatrix(matrixCopy);
-<a class="jxr_linenumber" name="L140" href="#L140">140</a>     }
-<a class="jxr_linenumber" name="L141" href="#L141">141</a> 
-<a class="jxr_linenumber" name="L142" href="#L142">142</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L143" href="#L143">143</a> <em class="jxr_javadoccomment">     * Computes the Spearman's rank correlation matrix for the columns of the</em>
-<a class="jxr_linenumber" name="L144" href="#L144">144</a> <em class="jxr_javadoccomment">     * input rectangular array.  The columns of the array represent values</em>
-<a class="jxr_linenumber" name="L145" href="#L145">145</a> <em class="jxr_javadoccomment">     * of variables to be correlated.</em>
-<a class="jxr_linenumber" name="L146" href="#L146">146</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L147" href="#L147">147</a> <em class="jxr_javadoccomment">     * @param matrix matrix with columns representing variables to correlate</em>
-<a class="jxr_linenumber" name="L148" href="#L148">148</a> <em class="jxr_javadoccomment">     * @return correlation matrix</em>
-<a class="jxr_linenumber" name="L149" href="#L149">149</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L150" href="#L150">150</a>     <strong class="jxr_keyword">public</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> computeCorrelationMatrix(<strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong>[][] matrix) {
-<a class="jxr_linenumber" name="L151" href="#L151">151</a>        <strong class="jxr_keyword">return</strong> computeCorrelationMatrix(<strong class="jxr_keyword">new</strong> <a href="../../../../../../org/apache/commons/math3/linear/BlockRealMatrix.html">BlockRealMatrix</a>(matrix));
-<a class="jxr_linenumber" name="L152" href="#L152">152</a>     }
-<a class="jxr_linenumber" name="L153" href="#L153">153</a> 
-<a class="jxr_linenumber" name="L154" href="#L154">154</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L155" href="#L155">155</a> <em class="jxr_javadoccomment">     * Computes the Spearman's rank correlation coefficient between the two arrays.</em>
-<a class="jxr_linenumber" name="L156" href="#L156">156</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L157" href="#L157">157</a> <em class="jxr_javadoccomment">     * @param xArray first data array</em>
-<a class="jxr_linenumber" name="L158" href="#L158">158</a> <em class="jxr_javadoccomment">     * @param yArray second data array</em>
-<a class="jxr_linenumber" name="L159" href="#L159">159</a> <em class="jxr_javadoccomment">     * @return Returns Spearman's rank correlation coefficient for the two arrays</em>
-<a class="jxr_linenumber" name="L160" href="#L160">160</a> <em class="jxr_javadoccomment">     * @throws DimensionMismatchException if the arrays lengths do not match</em>
-<a class="jxr_linenumber" name="L161" href="#L161">161</a> <em class="jxr_javadoccomment">     * @throws MathIllegalArgumentException if the array length is less than 2</em>
-<a class="jxr_linenumber" name="L162" href="#L162">162</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L163" href="#L163">163</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">double</strong> correlation(<strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong>[] xArray, <strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong>[] yArray) {
-<a class="jxr_linenumber" name="L164" href="#L164">164</a>         <strong class="jxr_keyword">if</strong> (xArray.length != yArray.length) {
-<a class="jxr_linenumber" name="L165" href="#L165">165</a>             <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> <a href="../../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html">DimensionMismatchException</a>(xArray.length, yArray.length);
-<a class="jxr_linenumber" name="L166" href="#L166">166</a>         } <strong class="jxr_keyword">else</strong> <strong class="jxr_keyword">if</strong> (xArray.length &lt; 2) {
-<a class="jxr_linenumber" name="L167" href="#L167">167</a>             <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> <a href="../../../../../../org/apache/commons/math3/exception/MathIllegalArgumentException.html">MathIllegalArgumentException</a>(LocalizedFormats.INSUFFICIENT_DIMENSION,
-<a class="jxr_linenumber" name="L168" href="#L168">168</a>                                                    xArray.length, 2);
-<a class="jxr_linenumber" name="L169" href="#L169">169</a>         } <strong class="jxr_keyword">else</strong> {
-<a class="jxr_linenumber" name="L170" href="#L170">170</a>             <strong class="jxr_keyword">double</strong>[] x = xArray;
-<a class="jxr_linenumber" name="L171" href="#L171">171</a>             <strong class="jxr_keyword">double</strong>[] y = yArray;
-<a class="jxr_linenumber" name="L172" href="#L172">172</a>             <strong class="jxr_keyword">if</strong> (rankingAlgorithm instanceof NaturalRanking &amp;&amp;
-<a class="jxr_linenumber" name="L173" href="#L173">173</a>                 NaNStrategy.REMOVED == ((NaturalRanking) rankingAlgorithm).getNanStrategy()) {
-<a class="jxr_linenumber" name="L174" href="#L174">174</a>                 <strong class="jxr_keyword">final</strong> Set&lt;Integer&gt; nanPositions = <strong class="jxr_keyword">new</strong> HashSet&lt;Integer&gt;();
-<a class="jxr_linenumber" name="L175" href="#L175">175</a> 
-<a class="jxr_linenumber" name="L176" href="#L176">176</a>                 nanPositions.addAll(getNaNPositions(xArray));
-<a class="jxr_linenumber" name="L177" href="#L177">177</a>                 nanPositions.addAll(getNaNPositions(yArray));
+<a class="jxr_linenumber" name="L109" href="#L109">109</a> <em class="jxr_javadoccomment">     * @throws NullPointerException if this instance was created with no data</em>
+<a class="jxr_linenumber" name="L110" href="#L110">110</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L111" href="#L111">111</a>     <strong class="jxr_keyword">public</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> getCorrelationMatrix() {
+<a class="jxr_linenumber" name="L112" href="#L112">112</a>         <strong class="jxr_keyword">return</strong> rankCorrelation.getCorrelationMatrix();
+<a class="jxr_linenumber" name="L113" href="#L113">113</a>     }
+<a class="jxr_linenumber" name="L114" href="#L114">114</a> 
+<a class="jxr_linenumber" name="L115" href="#L115">115</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L116" href="#L116">116</a> <em class="jxr_javadoccomment">     * Returns a {@link PearsonsCorrelation} instance constructed from the</em>
+<a class="jxr_linenumber" name="L117" href="#L117">117</a> <em class="jxr_javadoccomment">     * ranked input data. That is,</em>
+<a class="jxr_linenumber" name="L118" href="#L118">118</a> <em class="jxr_javadoccomment">     * &lt;code&gt;new SpearmansCorrelation(matrix).getRankCorrelation()&lt;/code&gt;</em>
+<a class="jxr_linenumber" name="L119" href="#L119">119</a> <em class="jxr_javadoccomment">     * is equivalent to</em>
+<a class="jxr_linenumber" name="L120" href="#L120">120</a> <em class="jxr_javadoccomment">     * &lt;code&gt;new PearsonsCorrelation(rankTransform(matrix))&lt;/code&gt; where</em>
+<a class="jxr_linenumber" name="L121" href="#L121">121</a> <em class="jxr_javadoccomment">     * &lt;code&gt;rankTransform(matrix)&lt;/code&gt; is the result of applying the</em>
+<a class="jxr_linenumber" name="L122" href="#L122">122</a> <em class="jxr_javadoccomment">     * configured &lt;code&gt;RankingAlgorithm&lt;/code&gt; to each of the columns of</em>
+<a class="jxr_linenumber" name="L123" href="#L123">123</a> <em class="jxr_javadoccomment">     * &lt;code&gt;matrix.&lt;/code&gt;</em>
+<a class="jxr_linenumber" name="L124" href="#L124">124</a> <em class="jxr_javadoccomment">     *</em>
+<a class="jxr_linenumber" name="L125" href="#L125">125</a> <em class="jxr_javadoccomment">     * &lt;p&gt;Returns null if this instance was created with no data.&lt;/p&gt;</em>
+<a class="jxr_linenumber" name="L126" href="#L126">126</a> <em class="jxr_javadoccomment">     *</em>
+<a class="jxr_linenumber" name="L127" href="#L127">127</a> <em class="jxr_javadoccomment">     * @return PearsonsCorrelation among ranked column data</em>
+<a class="jxr_linenumber" name="L128" href="#L128">128</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L129" href="#L129">129</a>     <strong class="jxr_keyword">public</strong> <a href="../../../../../../org/apache/commons/math3/stat/correlation/PearsonsCorrelation.html">PearsonsCorrelation</a> getRankCorrelation() {
+<a class="jxr_linenumber" name="L130" href="#L130">130</a>         <strong class="jxr_keyword">return</strong> rankCorrelation;
+<a class="jxr_linenumber" name="L131" href="#L131">131</a>     }
+<a class="jxr_linenumber" name="L132" href="#L132">132</a> 
+<a class="jxr_linenumber" name="L133" href="#L133">133</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L134" href="#L134">134</a> <em class="jxr_javadoccomment">     * Computes the Spearman's rank correlation matrix for the columns of the</em>
+<a class="jxr_linenumber" name="L135" href="#L135">135</a> <em class="jxr_javadoccomment">     * input matrix.</em>
+<a class="jxr_linenumber" name="L136" href="#L136">136</a> <em class="jxr_javadoccomment">     *</em>
+<a class="jxr_linenumber" name="L137" href="#L137">137</a> <em class="jxr_javadoccomment">     * @param matrix matrix with columns representing variables to correlate</em>
+<a class="jxr_linenumber" name="L138" href="#L138">138</a> <em class="jxr_javadoccomment">     * @return correlation matrix</em>
+<a class="jxr_linenumber" name="L139" href="#L139">139</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L140" href="#L140">140</a>     <strong class="jxr_keyword">public</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> computeCorrelationMatrix(<strong class="jxr_keyword">final</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> matrix) {
+<a class="jxr_linenumber" name="L141" href="#L141">141</a>         <strong class="jxr_keyword">final</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> matrixCopy = rankTransform(matrix);
+<a class="jxr_linenumber" name="L142" href="#L142">142</a>         <strong class="jxr_keyword">return</strong> <strong class="jxr_keyword">new</strong> <a href="../../../../../../org/apache/commons/math3/stat/correlation/PearsonsCorrelation.html">PearsonsCorrelation</a>().computeCorrelationMatrix(matrixCopy);
+<a class="jxr_linenumber" name="L143" href="#L143">143</a>     }
+<a class="jxr_linenumber" name="L144" href="#L144">144</a> 
+<a class="jxr_linenumber" name="L145" href="#L145">145</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L146" href="#L146">146</a> <em class="jxr_javadoccomment">     * Computes the Spearman's rank correlation matrix for the columns of the</em>
+<a class="jxr_linenumber" name="L147" href="#L147">147</a> <em class="jxr_javadoccomment">     * input rectangular array.  The columns of the array represent values</em>
+<a class="jxr_linenumber" name="L148" href="#L148">148</a> <em class="jxr_javadoccomment">     * of variables to be correlated.</em>
+<a class="jxr_linenumber" name="L149" href="#L149">149</a> <em class="jxr_javadoccomment">     *</em>
+<a class="jxr_linenumber" name="L150" href="#L150">150</a> <em class="jxr_javadoccomment">     * @param matrix matrix with columns representing variables to correlate</em>
+<a class="jxr_linenumber" name="L151" href="#L151">151</a> <em class="jxr_javadoccomment">     * @return correlation matrix</em>
+<a class="jxr_linenumber" name="L152" href="#L152">152</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L153" href="#L153">153</a>     <strong class="jxr_keyword">public</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> computeCorrelationMatrix(<strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong>[][] matrix) {
+<a class="jxr_linenumber" name="L154" href="#L154">154</a>        <strong class="jxr_keyword">return</strong> computeCorrelationMatrix(<strong class="jxr_keyword">new</strong> <a href="../../../../../../org/apache/commons/math3/linear/BlockRealMatrix.html">BlockRealMatrix</a>(matrix));
+<a class="jxr_linenumber" name="L155" href="#L155">155</a>     }
+<a class="jxr_linenumber" name="L156" href="#L156">156</a> 
+<a class="jxr_linenumber" name="L157" href="#L157">157</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L158" href="#L158">158</a> <em class="jxr_javadoccomment">     * Computes the Spearman's rank correlation coefficient between the two arrays.</em>
+<a class="jxr_linenumber" name="L159" href="#L159">159</a> <em class="jxr_javadoccomment">     *</em>
+<a class="jxr_linenumber" name="L160" href="#L160">160</a> <em class="jxr_javadoccomment">     * @param xArray first data array</em>
+<a class="jxr_linenumber" name="L161" href="#L161">161</a> <em class="jxr_javadoccomment">     * @param yArray second data array</em>
+<a class="jxr_linenumber" name="L162" href="#L162">162</a> <em class="jxr_javadoccomment">     * @return Returns Spearman's rank correlation coefficient for the two arrays</em>
+<a class="jxr_linenumber" name="L163" href="#L163">163</a> <em class="jxr_javadoccomment">     * @throws DimensionMismatchException if the arrays lengths do not match</em>
+<a class="jxr_linenumber" name="L164" href="#L164">164</a> <em class="jxr_javadoccomment">     * @throws MathIllegalArgumentException if the array length is less than 2</em>
+<a class="jxr_linenumber" name="L165" href="#L165">165</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L166" href="#L166">166</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">double</strong> correlation(<strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong>[] xArray, <strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong>[] yArray) {
+<a class="jxr_linenumber" name="L167" href="#L167">167</a>         <strong class="jxr_keyword">if</strong> (xArray.length != yArray.length) {
+<a class="jxr_linenumber" name="L168" href="#L168">168</a>             <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> <a href="../../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html">DimensionMismatchException</a>(xArray.length, yArray.length);
+<a class="jxr_linenumber" name="L169" href="#L169">169</a>         } <strong class="jxr_keyword">else</strong> <strong class="jxr_keyword">if</strong> (xArray.length &lt; 2) {
+<a class="jxr_linenumber" name="L170" href="#L170">170</a>             <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> <a href="../../../../../../org/apache/commons/math3/exception/MathIllegalArgumentException.html">MathIllegalArgumentException</a>(LocalizedFormats.INSUFFICIENT_DIMENSION,
+<a class="jxr_linenumber" name="L171" href="#L171">171</a>                                                    xArray.length, 2);
+<a class="jxr_linenumber" name="L172" href="#L172">172</a>         } <strong class="jxr_keyword">else</strong> {
+<a class="jxr_linenumber" name="L173" href="#L173">173</a>             <strong class="jxr_keyword">double</strong>[] x = xArray;
+<a class="jxr_linenumber" name="L174" href="#L174">174</a>             <strong class="jxr_keyword">double</strong>[] y = yArray;
+<a class="jxr_linenumber" name="L175" href="#L175">175</a>             <strong class="jxr_keyword">if</strong> (rankingAlgorithm instanceof NaturalRanking &amp;&amp;
+<a class="jxr_linenumber" name="L176" href="#L176">176</a>                 NaNStrategy.REMOVED == ((NaturalRanking) rankingAlgorithm).getNanStrategy()) {
+<a class="jxr_linenumber" name="L177" href="#L177">177</a>                 <strong class="jxr_keyword">final</strong> Set&lt;Integer&gt; nanPositions = <strong class="jxr_keyword">new</strong> HashSet&lt;Integer&gt;();
 <a class="jxr_linenumber" name="L178" href="#L178">178</a> 
-<a class="jxr_linenumber" name="L179" href="#L179">179</a>                 x = removeValues(xArray, nanPositions);
-<a class="jxr_linenumber" name="L180" href="#L180">180</a>                 y = removeValues(yArray, nanPositions);
-<a class="jxr_linenumber" name="L181" href="#L181">181</a>             }
-<a class="jxr_linenumber" name="L182" href="#L182">182</a>             <strong class="jxr_keyword">return</strong> <strong class="jxr_keyword">new</strong> <a href="../../../../../../org/apache/commons/math3/stat/correlation/PearsonsCorrelation.html">PearsonsCorrelation</a>().correlation(rankingAlgorithm.rank(x), rankingAlgorithm.rank(y));
-<a class="jxr_linenumber" name="L183" href="#L183">183</a>         }
-<a class="jxr_linenumber" name="L184" href="#L184">184</a>     }
-<a class="jxr_linenumber" name="L185" href="#L185">185</a> 
-<a class="jxr_linenumber" name="L186" href="#L186">186</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L187" href="#L187">187</a> <em class="jxr_javadoccomment">     * Applies rank transform to each of the columns of &lt;code&gt;matrix&lt;/code&gt;</em>
-<a class="jxr_linenumber" name="L188" href="#L188">188</a> <em class="jxr_javadoccomment">     * using the current &lt;code&gt;rankingAlgorithm&lt;/code&gt;.</em>
-<a class="jxr_linenumber" name="L189" href="#L189">189</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L190" href="#L190">190</a> <em class="jxr_javadoccomment">     * @param matrix matrix to transform</em>
-<a class="jxr_linenumber" name="L191" href="#L191">191</a> <em class="jxr_javadoccomment">     * @return a rank-transformed matrix</em>
-<a class="jxr_linenumber" name="L192" href="#L192">192</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L193" href="#L193">193</a>     <strong class="jxr_keyword">private</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> rankTransform(<strong class="jxr_keyword">final</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> matrix) {
-<a class="jxr_linenumber" name="L194" href="#L194">194</a>         <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> transformed = <strong class="jxr_keyword">null</strong>;
-<a class="jxr_linenumber" name="L195" href="#L195">195</a> 
-<a class="jxr_linenumber" name="L196" href="#L196">196</a>         <strong class="jxr_keyword">if</strong> (rankingAlgorithm instanceof NaturalRanking &amp;&amp;
-<a class="jxr_linenumber" name="L197" href="#L197">197</a>                 ((<a href="../../../../../../org/apache/commons/math3/stat/ranking/NaturalRanking.html">NaturalRanking</a>) rankingAlgorithm).getNanStrategy() == NaNStrategy.REMOVED) {
-<a class="jxr_linenumber" name="L198" href="#L198">198</a>             <strong class="jxr_keyword">final</strong> Set&lt;Integer&gt; nanPositions = <strong class="jxr_keyword">new</strong> HashSet&lt;Integer&gt;();
-<a class="jxr_linenumber" name="L199" href="#L199">199</a>             <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0; i &lt; matrix.getColumnDimension(); i++) {
-<a class="jxr_linenumber" name="L200" href="#L200">200</a>                 nanPositions.addAll(getNaNPositions(matrix.getColumn(i)));
-<a class="jxr_linenumber" name="L201" href="#L201">201</a>             }
-<a class="jxr_linenumber" name="L202" href="#L202">202</a> 
-<a class="jxr_linenumber" name="L203" href="#L203">203</a>             <em class="jxr_comment">// if we have found NaN values, we have to update the matrix size</em>
-<a class="jxr_linenumber" name="L204" href="#L204">204</a>             <strong class="jxr_keyword">if</strong> (!nanPositions.isEmpty()) {
-<a class="jxr_linenumber" name="L205" href="#L205">205</a>                 transformed = <strong class="jxr_keyword">new</strong> <a href="../../../../../../org/apache/commons/math3/linear/BlockRealMatrix.html">BlockRealMatrix</a>(matrix.getRowDimension() - nanPositions.size(),
-<a class="jxr_linenumber" name="L206" href="#L206">206</a>                                                   matrix.getColumnDimension());
-<a class="jxr_linenumber" name="L207" href="#L207">207</a>                 <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0; i &lt; transformed.getColumnDimension(); i++) {
-<a class="jxr_linenumber" name="L208" href="#L208">208</a>                     transformed.setColumn(i, removeValues(matrix.getColumn(i), nanPositions));
-<a class="jxr_linenumber" name="L209" href="#L209">209</a>                 }
-<a class="jxr_linenumber" name="L210" href="#L210">210</a>             }
-<a class="jxr_linenumber" name="L211" href="#L211">211</a>         }
-<a class="jxr_linenumber" name="L212" href="#L212">212</a> 
-<a class="jxr_linenumber" name="L213" href="#L213">213</a>         <strong class="jxr_keyword">if</strong> (transformed == <strong class="jxr_keyword">null</strong>) {
-<a class="jxr_linenumber" name="L214" href="#L214">214</a>             transformed = matrix.copy();
-<a class="jxr_linenumber" name="L215" href="#L215">215</a>         }
-<a class="jxr_linenumber" name="L216" href="#L216">216</a> 
-<a class="jxr_linenumber" name="L217" href="#L217">217</a>         <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0; i &lt; transformed.getColumnDimension(); i++) {
-<a class="jxr_linenumber" name="L218" href="#L218">218</a>             transformed.setColumn(i, rankingAlgorithm.rank(transformed.getColumn(i)));
-<a class="jxr_linenumber" name="L219" href="#L219">219</a>         }
-<a class="jxr_linenumber" name="L220" href="#L220">220</a> 
-<a class="jxr_linenumber" name="L221" href="#L221">221</a>         <strong class="jxr_keyword">return</strong> transformed;
-<a class="jxr_linenumber" name="L222" href="#L222">222</a>     }
+<a class="jxr_linenumber" name="L179" href="#L179">179</a>                 nanPositions.addAll(getNaNPositions(xArray));
+<a class="jxr_linenumber" name="L180" href="#L180">180</a>                 nanPositions.addAll(getNaNPositions(yArray));
+<a class="jxr_linenumber" name="L181" href="#L181">181</a> 
+<a class="jxr_linenumber" name="L182" href="#L182">182</a>                 x = removeValues(xArray, nanPositions);
+<a class="jxr_linenumber" name="L183" href="#L183">183</a>                 y = removeValues(yArray, nanPositions);
+<a class="jxr_linenumber" name="L184" href="#L184">184</a>             }
+<a class="jxr_linenumber" name="L185" href="#L185">185</a>             <strong class="jxr_keyword">return</strong> <strong class="jxr_keyword">new</strong> <a href="../../../../../../org/apache/commons/math3/stat/correlation/PearsonsCorrelation.html">PearsonsCorrelation</a>().correlation(rankingAlgorithm.rank(x), rankingAlgorithm.rank(y));
+<a class="jxr_linenumber" name="L186" href="#L186">186</a>         }
+<a class="jxr_linenumber" name="L187" href="#L187">187</a>     }
+<a class="jxr_linenumber" name="L188" href="#L188">188</a> 
+<a class="jxr_linenumber" name="L189" href="#L189">189</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L190" href="#L190">190</a> <em class="jxr_javadoccomment">     * Applies rank transform to each of the columns of &lt;code&gt;matrix&lt;/code&gt;</em>
+<a class="jxr_linenumber" name="L191" href="#L191">191</a> <em class="jxr_javadoccomment">     * using the current &lt;code&gt;rankingAlgorithm&lt;/code&gt;.</em>
+<a class="jxr_linenumber" name="L192" href="#L192">192</a> <em class="jxr_javadoccomment">     *</em>
+<a class="jxr_linenumber" name="L193" href="#L193">193</a> <em class="jxr_javadoccomment">     * @param matrix matrix to transform</em>
+<a class="jxr_linenumber" name="L194" href="#L194">194</a> <em class="jxr_javadoccomment">     * @return a rank-transformed matrix</em>
+<a class="jxr_linenumber" name="L195" href="#L195">195</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L196" href="#L196">196</a>     <strong class="jxr_keyword">private</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> rankTransform(<strong class="jxr_keyword">final</strong> <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> matrix) {
+<a class="jxr_linenumber" name="L197" href="#L197">197</a>         <a href="../../../../../../org/apache/commons/math3/linear/RealMatrix.html">RealMatrix</a> transformed = <strong class="jxr_keyword">null</strong>;
+<a class="jxr_linenumber" name="L198" href="#L198">198</a> 
+<a class="jxr_linenumber" name="L199" href="#L199">199</a>         <strong class="jxr_keyword">if</strong> (rankingAlgorithm instanceof NaturalRanking &amp;&amp;
+<a class="jxr_linenumber" name="L200" href="#L200">200</a>                 ((<a href="../../../../../../org/apache/commons/math3/stat/ranking/NaturalRanking.html">NaturalRanking</a>) rankingAlgorithm).getNanStrategy() == NaNStrategy.REMOVED) {
+<a class="jxr_linenumber" name="L201" href="#L201">201</a>             <strong class="jxr_keyword">final</strong> Set&lt;Integer&gt; nanPositions = <strong class="jxr_keyword">new</strong> HashSet&lt;Integer&gt;();
+<a class="jxr_linenumber" name="L202" href="#L202">202</a>             <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0; i &lt; matrix.getColumnDimension(); i++) {
+<a class="jxr_linenumber" name="L203" href="#L203">203</a>                 nanPositions.addAll(getNaNPositions(matrix.getColumn(i)));
+<a class="jxr_linenumber" name="L204" href="#L204">204</a>             }
+<a class="jxr_linenumber" name="L205" href="#L205">205</a> 
+<a class="jxr_linenumber" name="L206" href="#L206">206</a>             <em class="jxr_comment">// if we have found NaN values, we have to update the matrix size</em>
+<a class="jxr_linenumber" name="L207" href="#L207">207</a>             <strong class="jxr_keyword">if</strong> (!nanPositions.isEmpty()) {
+<a class="jxr_linenumber" name="L208" href="#L208">208</a>                 transformed = <strong class="jxr_keyword">new</strong> <a href="../../../../../../org/apache/commons/math3/linear/BlockRealMatrix.html">BlockRealMatrix</a>(matrix.getRowDimension() - nanPositions.size(),
+<a class="jxr_linenumber" name="L209" href="#L209">209</a>                                                   matrix.getColumnDimension());
+<a class="jxr_linenumber" name="L210" href="#L210">210</a>                 <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0; i &lt; transformed.getColumnDimension(); i++) {
+<a class="jxr_linenumber" name="L211" href="#L211">211</a>                     transformed.setColumn(i, removeValues(matrix.getColumn(i), nanPositions));
+<a class="jxr_linenumber" name="L212" href="#L212">212</a>                 }
+<a class="jxr_linenumber" name="L213" href="#L213">213</a>             }
+<a class="jxr_linenumber" name="L214" href="#L214">214</a>         }
+<a class="jxr_linenumber" name="L215" href="#L215">215</a> 
+<a class="jxr_linenumber" name="L216" href="#L216">216</a>         <strong class="jxr_keyword">if</strong> (transformed == <strong class="jxr_keyword">null</strong>) {
+<a class="jxr_linenumber" name="L217" href="#L217">217</a>             transformed = matrix.copy();
+<a class="jxr_linenumber" name="L218" href="#L218">218</a>         }
+<a class="jxr_linenumber" name="L219" href="#L219">219</a> 
+<a class="jxr_linenumber" name="L220" href="#L220">220</a>         <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0; i &lt; transformed.getColumnDimension(); i++) {
+<a class="jxr_linenumber" name="L221" href="#L221">221</a>             transformed.setColumn(i, rankingAlgorithm.rank(transformed.getColumn(i)));
+<a class="jxr_linenumber" name="L222" href="#L222">222</a>         }
 <a class="jxr_linenumber" name="L223" href="#L223">223</a> 
-<a class="jxr_linenumber" name="L224" href="#L224">224</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L225" href="#L225">225</a> <em class="jxr_javadoccomment">     * Returns a list containing the indices of NaN values in the input array.</em>
-<a class="jxr_linenumber" name="L226" href="#L226">226</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L227" href="#L227">227</a> <em class="jxr_javadoccomment">     * @param input the input array</em>
-<a class="jxr_linenumber" name="L228" href="#L228">228</a> <em class="jxr_javadoccomment">     * @return a list of NaN positions in the input array</em>
-<a class="jxr_linenumber" name="L229" href="#L229">229</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L230" href="#L230">230</a>     <strong class="jxr_keyword">private</strong> List&lt;Integer&gt; getNaNPositions(<strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong>[] input) {
-<a class="jxr_linenumber" name="L231" href="#L231">231</a>         <strong class="jxr_keyword">final</strong> List&lt;Integer&gt; positions = <strong class="jxr_keyword">new</strong> ArrayList&lt;Integer&gt;();
-<a class="jxr_linenumber" name="L232" href="#L232">232</a>         <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0; i &lt; input.length; i++) {
-<a class="jxr_linenumber" name="L233" href="#L233">233</a>             <strong class="jxr_keyword">if</strong> (Double.isNaN(input[i])) {
-<a class="jxr_linenumber" name="L234" href="#L234">234</a>                 positions.add(i);
-<a class="jxr_linenumber" name="L235" href="#L235">235</a>             }
-<a class="jxr_linenumber" name="L236" href="#L236">236</a>         }
-<a class="jxr_linenumber" name="L237" href="#L237">237</a>         <strong class="jxr_keyword">return</strong> positions;
-<a class="jxr_linenumber" name="L238" href="#L238">238</a>     }
-<a class="jxr_linenumber" name="L239" href="#L239">239</a> 
-<a class="jxr_linenumber" name="L240" href="#L240">240</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L241" href="#L241">241</a> <em class="jxr_javadoccomment">     * Removes all values from the input array at the specified indices.</em>
-<a class="jxr_linenumber" name="L242" href="#L242">242</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L243" href="#L243">243</a> <em class="jxr_javadoccomment">     * @param input the input array</em>
-<a class="jxr_linenumber" name="L244" href="#L244">244</a> <em class="jxr_javadoccomment">     * @param indices a set containing the indices to be removed</em>
-<a class="jxr_linenumber" name="L245" href="#L245">245</a> <em class="jxr_javadoccomment">     * @return the input array without the values at the specified indices</em>
-<a class="jxr_linenumber" name="L246" href="#L246">246</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L247" href="#L247">247</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">double</strong>[] removeValues(<strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong>[] input, <strong class="jxr_keyword">final</strong> Set&lt;Integer&gt; indices) {
-<a class="jxr_linenumber" name="L248" href="#L248">248</a>         <strong class="jxr_keyword">if</strong> (indices.isEmpty()) {
-<a class="jxr_linenumber" name="L249" href="#L249">249</a>             <strong class="jxr_keyword">return</strong> input;
-<a class="jxr_linenumber" name="L250" href="#L250">250</a>         }
-<a class="jxr_linenumber" name="L251" href="#L251">251</a>         <strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong>[] result = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[input.length - indices.size()];
-<a class="jxr_linenumber" name="L252" href="#L252">252</a>         <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0, j = 0; i &lt; input.length; i++) {
-<a class="jxr_linenumber" name="L253" href="#L253">253</a>             <strong class="jxr_keyword">if</strong> (!indices.contains(i)) {
-<a class="jxr_linenumber" name="L254" href="#L254">254</a>                 result[j++] = input[i];
-<a class="jxr_linenumber" name="L255" href="#L255">255</a>             }
-<a class="jxr_linenumber" name="L256" href="#L256">256</a>         }
-<a class="jxr_linenumber" name="L257" href="#L257">257</a>         <strong class="jxr_keyword">return</strong> result;
-<a class="jxr_linenumber" name="L258" href="#L258">258</a>     }
-<a class="jxr_linenumber" name="L259" href="#L259">259</a> }
+<a class="jxr_linenumber" name="L224" href="#L224">224</a>         <strong class="jxr_keyword">return</strong> transformed;
+<a class="jxr_linenumber" name="L225" href="#L225">225</a>     }
+<a class="jxr_linenumber" name="L226" href="#L226">226</a> 
+<a class="jxr_linenumber" name="L227" href="#L227">227</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L228" href="#L228">228</a> <em class="jxr_javadoccomment">     * Returns a list containing the indices of NaN values in the input array.</em>
+<a class="jxr_linenumber" name="L229" href="#L229">229</a> <em class="jxr_javadoccomment">     *</em>
+<a class="jxr_linenumber" name="L230" href="#L230">230</a> <em class="jxr_javadoccomment">     * @param input the input array</em>
+<a class="jxr_linenumber" name="L231" href="#L231">231</a> <em class="jxr_javadoccomment">     * @return a list of NaN positions in the input array</em>
+<a class="jxr_linenumber" name="L232" href="#L232">232</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L233" href="#L233">233</a>     <strong class="jxr_keyword">private</strong> List&lt;Integer&gt; getNaNPositions(<strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong>[] input) {
+<a class="jxr_linenumber" name="L234" href="#L234">234</a>         <strong class="jxr_keyword">final</strong> List&lt;Integer&gt; positions = <strong class="jxr_keyword">new</strong> ArrayList&lt;Integer&gt;();
+<a class="jxr_linenumber" name="L235" href="#L235">235</a>         <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0; i &lt; input.length; i++) {
+<a class="jxr_linenumber" name="L236" href="#L236">236</a>             <strong class="jxr_keyword">if</strong> (Double.isNaN(input[i])) {
+<a class="jxr_linenumber" name="L237" href="#L237">237</a>                 positions.add(i);
+<a class="jxr_linenumber" name="L238" href="#L238">238</a>             }
+<a class="jxr_linenumber" name="L239" href="#L239">239</a>         }
+<a class="jxr_linenumber" name="L240" href="#L240">240</a>         <strong class="jxr_keyword">return</strong> positions;
+<a class="jxr_linenumber" name="L241" href="#L241">241</a>     }
+<a class="jxr_linenumber" name="L242" href="#L242">242</a> 
+<a class="jxr_linenumber" name="L243" href="#L243">243</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L244" href="#L244">244</a> <em class="jxr_javadoccomment">     * Removes all values from the input array at the specified indices.</em>
+<a class="jxr_linenumber" name="L245" href="#L245">245</a> <em class="jxr_javadoccomment">     *</em>
+<a class="jxr_linenumber" name="L246" href="#L246">246</a> <em class="jxr_javadoccomment">     * @param input the input array</em>
+<a class="jxr_linenumber" name="L247" href="#L247">247</a> <em class="jxr_javadoccomment">     * @param indices a set containing the indices to be removed</em>
+<a class="jxr_linenumber" name="L248" href="#L248">248</a> <em class="jxr_javadoccomment">     * @return the input array without the values at the specified indices</em>
+<a class="jxr_linenumber" name="L249" href="#L249">249</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L250" href="#L250">250</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">double</strong>[] removeValues(<strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong>[] input, <strong class="jxr_keyword">final</strong> Set&lt;Integer&gt; indices) {
+<a class="jxr_linenumber" name="L251" href="#L251">251</a>         <strong class="jxr_keyword">if</strong> (indices.isEmpty()) {
+<a class="jxr_linenumber" name="L252" href="#L252">252</a>             <strong class="jxr_keyword">return</strong> input;
+<a class="jxr_linenumber" name="L253" href="#L253">253</a>         }
+<a class="jxr_linenumber" name="L254" href="#L254">254</a>         <strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong>[] result = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[input.length - indices.size()];
+<a class="jxr_linenumber" name="L255" href="#L255">255</a>         <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0, j = 0; i &lt; input.length; i++) {
+<a class="jxr_linenumber" name="L256" href="#L256">256</a>             <strong class="jxr_keyword">if</strong> (!indices.contains(i)) {
+<a class="jxr_linenumber" name="L257" href="#L257">257</a>                 result[j++] = input[i];
+<a class="jxr_linenumber" name="L258" href="#L258">258</a>             }
+<a class="jxr_linenumber" name="L259" href="#L259">259</a>         }
+<a class="jxr_linenumber" name="L260" href="#L260">260</a>         <strong class="jxr_keyword">return</strong> result;
+<a class="jxr_linenumber" name="L261" href="#L261">261</a>     }
+<a class="jxr_linenumber" name="L262" href="#L262">262</a> }
 </pre>
 <hr/>
 <div id="footer">Copyright &#169; 2003&#x2013;2015 <a href="http://www.apache.org/">The Apache Software Foundation</a>. All rights reserved.</div>

Modified: websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/correlation/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/correlation/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/correlation/package-frame.html Sun May 17 17:05:50 2015
@@ -1,39 +1,39 @@
-
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xml:lang="en" lang="en">
-	<head>
-		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.stat.correlation</title>
-		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
-	</head>
-	<body>
-
-		<h3>
-        	<a href="package-summary.html" target="classFrame">org.apache.commons.math3.stat.correlation</a>
-      	</h3>
-
-      	<h3>Classes</h3>
-
-      	<ul>
-      		          	<li>
-            	<a href="Covariance.html" target="classFrame">Covariance</a>
-          	</li>
-          	          	<li>
-            	<a href="KendallsCorrelation.html" target="classFrame">KendallsCorrelation</a>
-          	</li>
-          	          	<li>
-            	<a href="PearsonsCorrelation.html" target="classFrame">PearsonsCorrelation</a>
-          	</li>
-          	          	<li>
-            	<a href="SpearmansCorrelation.html" target="classFrame">SpearmansCorrelation</a>
-          	</li>
-          	          	<li>
-            	<a href="StorelessBivariateCovariance.html" target="classFrame">StorelessBivariateCovariance</a>
-          	</li>
-          	          	<li>
-            	<a href="StorelessCovariance.html" target="classFrame">StorelessCovariance</a>
-          	</li>
-          	      	</ul>
-
-	</body>
+
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xml:lang="en" lang="en">
+	<head>
+		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
+		<title>Apache Commons Math 3.6-SNAPSHOT Reference Package org.apache.commons.math3.stat.correlation</title>
+		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
+	</head>
+	<body>
+
+		<h3>
+        	<a href="package-summary.html" target="classFrame">org.apache.commons.math3.stat.correlation</a>
+      	</h3>
+
+      	<h3>Classes</h3>
+
+      	<ul>
+      		          	<li>
+            	<a href="Covariance.html" target="classFrame">Covariance</a>
+          	</li>
+          	          	<li>
+            	<a href="KendallsCorrelation.html" target="classFrame">KendallsCorrelation</a>
+          	</li>
+          	          	<li>
+            	<a href="PearsonsCorrelation.html" target="classFrame">PearsonsCorrelation</a>
+          	</li>
+          	          	<li>
+            	<a href="SpearmansCorrelation.html" target="classFrame">SpearmansCorrelation</a>
+          	</li>
+          	          	<li>
+            	<a href="StorelessBivariateCovariance.html" target="classFrame">StorelessBivariateCovariance</a>
+          	</li>
+          	          	<li>
+            	<a href="StorelessCovariance.html" target="classFrame">StorelessCovariance</a>
+          	</li>
+          	      	</ul>
+
+	</body>
 </html>
\ No newline at end of file

Modified: websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/correlation/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/correlation/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/correlation/package-summary.html Sun May 17 17:05:50 2015
@@ -1,94 +1,94 @@
-
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xml:lang="en" lang="en">
-	<head>
-		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.stat.correlation</title>
-		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
-	</head>
-	<body>
-		      	<div class="overview">
-        	<ul>
-          		<li>
-            		<a href="../../../../../../overview-summary.html">Overview</a>
-          		</li>
-          		<li class="selected">Package</li>
-        	</ul>
-      	</div>
-      	<div class="framenoframe">
-        	<ul>
-          		<li>
-            		<a href="../../../../../../index.html" target="_top">FRAMES</a>
-          		</li>
-          		<li>
-            		<a href="package-summary.html" target="_top">NO FRAMES</a>
-          		</li>
-        	</ul>
-      	</div>
-		
-		      	<h2>Package org.apache.commons.math3.stat.correlation</h2>
-
-		<table class="summary">
-        	<thead>
-          		<tr>
-            		<th>Class Summary</th>
-          		</tr>
-        	</thead>
-        	<tbody>
-        		            	<tr>
-              		<td>
-                		<a href="Covariance.html" target="classFrame">Covariance</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="KendallsCorrelation.html" target="classFrame">KendallsCorrelation</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="PearsonsCorrelation.html" target="classFrame">PearsonsCorrelation</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="SpearmansCorrelation.html" target="classFrame">SpearmansCorrelation</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="StorelessBivariateCovariance.html" target="classFrame">StorelessBivariateCovariance</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="StorelessCovariance.html" target="classFrame">StorelessCovariance</a>
-              		</td>
-            	</tr>
-				        	</tbody>
-      	</table>
-		
-		      	<div class="overview">
-        	<ul>
-          		<li>
-            		<a href="../../../../../../overview-summary.html">Overview</a>
-          		</li>
-          		<li class="selected">Package</li>
-        	</ul>
-      	</div>
-      	<div class="framenoframe">
-        	<ul>
-          		<li>
-            		<a href="../../../../../../index.html" target="_top">FRAMES</a>
-          		</li>
-          		<li>
-            		<a href="package-summary.html" target="_top">NO FRAMES</a>
-          		</li>
-        	</ul>
-      	</div>
-				<hr />
-		<div id="footer">
-			Copyright &#169; 2003&#x2013;2015 <a href="http://www.apache.org/">The Apache Software Foundation</a>. All rights reserved.
-		</div>
-	</body>
+
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xml:lang="en" lang="en">
+	<head>
+		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
+		<title>Apache Commons Math 3.6-SNAPSHOT Reference Package org.apache.commons.math3.stat.correlation</title>
+		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
+	</head>
+	<body>
+		      	<div class="overview">
+        	<ul>
+          		<li>
+            		<a href="../../../../../../overview-summary.html">Overview</a>
+          		</li>
+          		<li class="selected">Package</li>
+        	</ul>
+      	</div>
+      	<div class="framenoframe">
+        	<ul>
+          		<li>
+            		<a href="../../../../../../index.html" target="_top">FRAMES</a>
+          		</li>
+          		<li>
+            		<a href="package-summary.html" target="_top">NO FRAMES</a>
+          		</li>
+        	</ul>
+      	</div>
+		
+		      	<h2>Package org.apache.commons.math3.stat.correlation</h2>
+
+		<table class="summary">
+        	<thead>
+          		<tr>
+            		<th>Class Summary</th>
+          		</tr>
+        	</thead>
+        	<tbody>
+        		            	<tr>
+              		<td>
+                		<a href="Covariance.html" target="classFrame">Covariance</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="KendallsCorrelation.html" target="classFrame">KendallsCorrelation</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="PearsonsCorrelation.html" target="classFrame">PearsonsCorrelation</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="SpearmansCorrelation.html" target="classFrame">SpearmansCorrelation</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="StorelessBivariateCovariance.html" target="classFrame">StorelessBivariateCovariance</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="StorelessCovariance.html" target="classFrame">StorelessCovariance</a>
+              		</td>
+            	</tr>
+				        	</tbody>
+      	</table>
+		
+		      	<div class="overview">
+        	<ul>
+          		<li>
+            		<a href="../../../../../../overview-summary.html">Overview</a>
+          		</li>
+          		<li class="selected">Package</li>
+        	</ul>
+      	</div>
+      	<div class="framenoframe">
+        	<ul>
+          		<li>
+            		<a href="../../../../../../index.html" target="_top">FRAMES</a>
+          		</li>
+          		<li>
+            		<a href="package-summary.html" target="_top">NO FRAMES</a>
+          		</li>
+        	</ul>
+      	</div>
+				<hr />
+		<div id="footer">
+			Copyright &#169; 2003&#x2013;2015 <a href="http://www.apache.org/">The Apache Software Foundation</a>. All rights reserved.
+		</div>
+	</body>
 </html>
\ No newline at end of file

Modified: websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/descriptive/moment/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/descriptive/moment/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/descriptive/moment/package-frame.html Sun May 17 17:05:50 2015
@@ -1,63 +1,63 @@
-
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xml:lang="en" lang="en">
-	<head>
-		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.stat.descriptive.moment</title>
-		<link rel="stylesheet" type="text/css" href="../../../../../../../stylesheet.css" title="style" />
-	</head>
-	<body>
-
-		<h3>
-        	<a href="package-summary.html" target="classFrame">org.apache.commons.math3.stat.descriptive.moment</a>
-      	</h3>
-
-      	<h3>Classes</h3>
-
-      	<ul>
-      		          	<li>
-            	<a href="SemiVariance.html" target="classFrame">Direction</a>
-          	</li>
-          	          	<li>
-            	<a href="FirstMoment.html" target="classFrame">FirstMoment</a>
-          	</li>
-          	          	<li>
-            	<a href="FourthMoment.html" target="classFrame">FourthMoment</a>
-          	</li>
-          	          	<li>
-            	<a href="GeometricMean.html" target="classFrame">GeometricMean</a>
-          	</li>
-          	          	<li>
-            	<a href="Kurtosis.html" target="classFrame">Kurtosis</a>
-          	</li>
-          	          	<li>
-            	<a href="Mean.html" target="classFrame">Mean</a>
-          	</li>
-          	          	<li>
-            	<a href="SecondMoment.html" target="classFrame">SecondMoment</a>
-          	</li>
-          	          	<li>
-            	<a href="SemiVariance.html" target="classFrame">SemiVariance</a>
-          	</li>
-          	          	<li>
-            	<a href="Skewness.html" target="classFrame">Skewness</a>
-          	</li>
-          	          	<li>
-            	<a href="StandardDeviation.html" target="classFrame">StandardDeviation</a>
-          	</li>
-          	          	<li>
-            	<a href="ThirdMoment.html" target="classFrame">ThirdMoment</a>
-          	</li>
-          	          	<li>
-            	<a href="Variance.html" target="classFrame">Variance</a>
-          	</li>
-          	          	<li>
-            	<a href="VectorialCovariance.html" target="classFrame">VectorialCovariance</a>
-          	</li>
-          	          	<li>
-            	<a href="VectorialMean.html" target="classFrame">VectorialMean</a>
-          	</li>
-          	      	</ul>
-
-	</body>
+
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xml:lang="en" lang="en">
+	<head>
+		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
+		<title>Apache Commons Math 3.6-SNAPSHOT Reference Package org.apache.commons.math3.stat.descriptive.moment</title>
+		<link rel="stylesheet" type="text/css" href="../../../../../../../stylesheet.css" title="style" />
+	</head>
+	<body>
+
+		<h3>
+        	<a href="package-summary.html" target="classFrame">org.apache.commons.math3.stat.descriptive.moment</a>
+      	</h3>
+
+      	<h3>Classes</h3>
+
+      	<ul>
+      		          	<li>
+            	<a href="SemiVariance.html" target="classFrame">Direction</a>
+          	</li>
+          	          	<li>
+            	<a href="FirstMoment.html" target="classFrame">FirstMoment</a>
+          	</li>
+          	          	<li>
+            	<a href="FourthMoment.html" target="classFrame">FourthMoment</a>
+          	</li>
+          	          	<li>
+            	<a href="GeometricMean.html" target="classFrame">GeometricMean</a>
+          	</li>
+          	          	<li>
+            	<a href="Kurtosis.html" target="classFrame">Kurtosis</a>
+          	</li>
+          	          	<li>
+            	<a href="Mean.html" target="classFrame">Mean</a>
+          	</li>
+          	          	<li>
+            	<a href="SecondMoment.html" target="classFrame">SecondMoment</a>
+          	</li>
+          	          	<li>
+            	<a href="SemiVariance.html" target="classFrame">SemiVariance</a>
+          	</li>
+          	          	<li>
+            	<a href="Skewness.html" target="classFrame">Skewness</a>
+          	</li>
+          	          	<li>
+            	<a href="StandardDeviation.html" target="classFrame">StandardDeviation</a>
+          	</li>
+          	          	<li>
+            	<a href="ThirdMoment.html" target="classFrame">ThirdMoment</a>
+          	</li>
+          	          	<li>
+            	<a href="Variance.html" target="classFrame">Variance</a>
+          	</li>
+          	          	<li>
+            	<a href="VectorialCovariance.html" target="classFrame">VectorialCovariance</a>
+          	</li>
+          	          	<li>
+            	<a href="VectorialMean.html" target="classFrame">VectorialMean</a>
+          	</li>
+          	      	</ul>
+
+	</body>
 </html>
\ No newline at end of file

Modified: websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/descriptive/moment/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/descriptive/moment/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/descriptive/moment/package-summary.html Sun May 17 17:05:50 2015
@@ -1,134 +1,134 @@
-
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xml:lang="en" lang="en">
-	<head>
-		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.stat.descriptive.moment</title>
-		<link rel="stylesheet" type="text/css" href="../../../../../../../stylesheet.css" title="style" />
-	</head>
-	<body>
-		      	<div class="overview">
-        	<ul>
-          		<li>
-            		<a href="../../../../../../../overview-summary.html">Overview</a>
-          		</li>
-          		<li class="selected">Package</li>
-        	</ul>
-      	</div>
-      	<div class="framenoframe">
-        	<ul>
-          		<li>
-            		<a href="../../../../../../../index.html" target="_top">FRAMES</a>
-          		</li>
-          		<li>
-            		<a href="package-summary.html" target="_top">NO FRAMES</a>
-          		</li>
-        	</ul>
-      	</div>
-		
-		      	<h2>Package org.apache.commons.math3.stat.descriptive.moment</h2>
-
-		<table class="summary">
-        	<thead>
-          		<tr>
-            		<th>Class Summary</th>
-          		</tr>
-        	</thead>
-        	<tbody>
-        		            	<tr>
-              		<td>
-                		<a href="SemiVariance.html" target="classFrame">Direction</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="FirstMoment.html" target="classFrame">FirstMoment</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="FourthMoment.html" target="classFrame">FourthMoment</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="GeometricMean.html" target="classFrame">GeometricMean</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="Kurtosis.html" target="classFrame">Kurtosis</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="Mean.html" target="classFrame">Mean</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="SecondMoment.html" target="classFrame">SecondMoment</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="SemiVariance.html" target="classFrame">SemiVariance</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="Skewness.html" target="classFrame">Skewness</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="StandardDeviation.html" target="classFrame">StandardDeviation</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="ThirdMoment.html" target="classFrame">ThirdMoment</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="Variance.html" target="classFrame">Variance</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="VectorialCovariance.html" target="classFrame">VectorialCovariance</a>
-              		</td>
-            	</tr>
-				            	<tr>
-              		<td>
-                		<a href="VectorialMean.html" target="classFrame">VectorialMean</a>
-              		</td>
-            	</tr>
-				        	</tbody>
-      	</table>
-		
-		      	<div class="overview">
-        	<ul>
-          		<li>
-            		<a href="../../../../../../../overview-summary.html">Overview</a>
-          		</li>
-          		<li class="selected">Package</li>
-        	</ul>
-      	</div>
-      	<div class="framenoframe">
-        	<ul>
-          		<li>
-            		<a href="../../../../../../../index.html" target="_top">FRAMES</a>
-          		</li>
-          		<li>
-            		<a href="package-summary.html" target="_top">NO FRAMES</a>
-          		</li>
-        	</ul>
-      	</div>
-				<hr />
-		<div id="footer">
-			Copyright &#169; 2003&#x2013;2015 <a href="http://www.apache.org/">The Apache Software Foundation</a>. All rights reserved.
-		</div>
-	</body>
+
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xml:lang="en" lang="en">
+	<head>
+		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
+		<title>Apache Commons Math 3.6-SNAPSHOT Reference Package org.apache.commons.math3.stat.descriptive.moment</title>
+		<link rel="stylesheet" type="text/css" href="../../../../../../../stylesheet.css" title="style" />
+	</head>
+	<body>
+		      	<div class="overview">
+        	<ul>
+          		<li>
+            		<a href="../../../../../../../overview-summary.html">Overview</a>
+          		</li>
+          		<li class="selected">Package</li>
+        	</ul>
+      	</div>
+      	<div class="framenoframe">
+        	<ul>
+          		<li>
+            		<a href="../../../../../../../index.html" target="_top">FRAMES</a>
+          		</li>
+          		<li>
+            		<a href="package-summary.html" target="_top">NO FRAMES</a>
+          		</li>
+        	</ul>
+      	</div>
+		
+		      	<h2>Package org.apache.commons.math3.stat.descriptive.moment</h2>
+
+		<table class="summary">
+        	<thead>
+          		<tr>
+            		<th>Class Summary</th>
+          		</tr>
+        	</thead>
+        	<tbody>
+        		            	<tr>
+              		<td>
+                		<a href="SemiVariance.html" target="classFrame">Direction</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="FirstMoment.html" target="classFrame">FirstMoment</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="FourthMoment.html" target="classFrame">FourthMoment</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="GeometricMean.html" target="classFrame">GeometricMean</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="Kurtosis.html" target="classFrame">Kurtosis</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="Mean.html" target="classFrame">Mean</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="SecondMoment.html" target="classFrame">SecondMoment</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="SemiVariance.html" target="classFrame">SemiVariance</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="Skewness.html" target="classFrame">Skewness</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="StandardDeviation.html" target="classFrame">StandardDeviation</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="ThirdMoment.html" target="classFrame">ThirdMoment</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="Variance.html" target="classFrame">Variance</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="VectorialCovariance.html" target="classFrame">VectorialCovariance</a>
+              		</td>
+            	</tr>
+				            	<tr>
+              		<td>
+                		<a href="VectorialMean.html" target="classFrame">VectorialMean</a>
+              		</td>
+            	</tr>
+				        	</tbody>
+      	</table>
+		
+		      	<div class="overview">
+        	<ul>
+          		<li>
+            		<a href="../../../../../../../overview-summary.html">Overview</a>
+          		</li>
+          		<li class="selected">Package</li>
+        	</ul>
+      	</div>
+      	<div class="framenoframe">
+        	<ul>
+          		<li>
+            		<a href="../../../../../../../index.html" target="_top">FRAMES</a>
+          		</li>
+          		<li>
+            		<a href="package-summary.html" target="_top">NO FRAMES</a>
+          		</li>
+        	</ul>
+      	</div>
+				<hr />
+		<div id="footer">
+			Copyright &#169; 2003&#x2013;2015 <a href="http://www.apache.org/">The Apache Software Foundation</a>. All rights reserved.
+		</div>
+	</body>
 </html>
\ No newline at end of file

Modified: websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/descriptive/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/descriptive/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref/org/apache/commons/math3/stat/descriptive/package-frame.html Sun May 17 17:05:50 2015
@@ -1,69 +1,69 @@
-
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xml:lang="en" lang="en">
-	<head>
-		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.stat.descriptive</title>
-		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
-	</head>
-	<body>
-
-		<h3>
-        	<a href="package-summary.html" target="classFrame">org.apache.commons.math3.stat.descriptive</a>
-      	</h3>
-
-      	<h3>Classes</h3>
-
-      	<ul>
-      		          	<li>
-            	<a href="AbstractStorelessUnivariateStatistic.html" target="classFrame">AbstractStorelessUnivariateStatistic</a>
-          	</li>
-          	          	<li>
-            	<a href="AbstractUnivariateStatistic.html" target="classFrame">AbstractUnivariateStatistic</a>
-          	</li>
-          	          	<li>
-            	<a href="AggregateSummaryStatistics.html" target="classFrame">AggregateSummaryStatistics</a>
-          	</li>
-          	          	<li>
-            	<a href="AggregateSummaryStatistics.html" target="classFrame">AggregatingSummaryStatistics</a>
-          	</li>
-          	          	<li>
-            	<a href="DescriptiveStatistics.html" target="classFrame">DescriptiveStatistics</a>
-          	</li>
-          	          	<li>
-            	<a href="MultivariateSummaryStatistics.html" target="classFrame">MultivariateSummaryStatistics</a>
-          	</li>
-          	          	<li>
-            	<a href="StatisticalMultivariateSummary.html" target="classFrame">StatisticalMultivariateSummary</a>
-          	</li>
-          	          	<li>
-            	<a href="StatisticalSummary.html" target="classFrame">StatisticalSummary</a>
-          	</li>
-          	          	<li>
-            	<a href="StatisticalSummaryValues.html" target="classFrame">StatisticalSummaryValues</a>
-          	</li>
-          	          	<li>
-            	<a href="StorelessUnivariateStatistic.html" target="classFrame">StorelessUnivariateStatistic</a>
-          	</li>
-          	          	<li>
-            	<a href="SummaryStatistics.html" target="classFrame">SummaryStatistics</a>
-          	</li>
-          	          	<li>
-            	<a href="SynchronizedDescriptiveStatistics.html" target="classFrame">SynchronizedDescriptiveStatistics</a>
-          	</li>
-          	          	<li>
-            	<a href="SynchronizedMultivariateSummaryStatistics.html" target="classFrame">SynchronizedMultivariateSummaryStatistics</a>
-          	</li>
-          	          	<li>
-            	<a href="SynchronizedSummaryStatistics.html" target="classFrame">SynchronizedSummaryStatistics</a>
-          	</li>
-          	          	<li>
-            	<a href="UnivariateStatistic.html" target="classFrame">UnivariateStatistic</a>
-          	</li>
-          	          	<li>
-            	<a href="WeightedEvaluation.html" target="classFrame">WeightedEvaluation</a>
-          	</li>
-          	      	</ul>
-
-	</body>
+
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xml:lang="en" lang="en">
+	<head>
+		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
+		<title>Apache Commons Math 3.6-SNAPSHOT Reference Package org.apache.commons.math3.stat.descriptive</title>
+		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
+	</head>
+	<body>
+
+		<h3>
+        	<a href="package-summary.html" target="classFrame">org.apache.commons.math3.stat.descriptive</a>
+      	</h3>
+
+      	<h3>Classes</h3>
+
+      	<ul>
+      		          	<li>
+            	<a href="AbstractStorelessUnivariateStatistic.html" target="classFrame">AbstractStorelessUnivariateStatistic</a>
+          	</li>
+          	          	<li>
+            	<a href="AbstractUnivariateStatistic.html" target="classFrame">AbstractUnivariateStatistic</a>
+          	</li>
+          	          	<li>
+            	<a href="AggregateSummaryStatistics.html" target="classFrame">AggregateSummaryStatistics</a>
+          	</li>
+          	          	<li>
+            	<a href="AggregateSummaryStatistics.html" target="classFrame">AggregatingSummaryStatistics</a>
+          	</li>
+          	          	<li>
+            	<a href="DescriptiveStatistics.html" target="classFrame">DescriptiveStatistics</a>
+          	</li>
+          	          	<li>
+            	<a href="MultivariateSummaryStatistics.html" target="classFrame">MultivariateSummaryStatistics</a>
+          	</li>
+          	          	<li>
+            	<a href="StatisticalMultivariateSummary.html" target="classFrame">StatisticalMultivariateSummary</a>
+          	</li>
+          	          	<li>
+            	<a href="StatisticalSummary.html" target="classFrame">StatisticalSummary</a>
+          	</li>
+          	          	<li>
+            	<a href="StatisticalSummaryValues.html" target="classFrame">StatisticalSummaryValues</a>
+          	</li>
+          	          	<li>
+            	<a href="StorelessUnivariateStatistic.html" target="classFrame">StorelessUnivariateStatistic</a>
+          	</li>
+          	          	<li>
+            	<a href="SummaryStatistics.html" target="classFrame">SummaryStatistics</a>
+          	</li>
+          	          	<li>
+            	<a href="SynchronizedDescriptiveStatistics.html" target="classFrame">SynchronizedDescriptiveStatistics</a>
+          	</li>
+          	          	<li>
+            	<a href="SynchronizedMultivariateSummaryStatistics.html" target="classFrame">SynchronizedMultivariateSummaryStatistics</a>
+          	</li>
+          	          	<li>
+            	<a href="SynchronizedSummaryStatistics.html" target="classFrame">SynchronizedSummaryStatistics</a>
+          	</li>
+          	          	<li>
+            	<a href="UnivariateStatistic.html" target="classFrame">UnivariateStatistic</a>
+          	</li>
+          	          	<li>
+            	<a href="WeightedEvaluation.html" target="classFrame">WeightedEvaluation</a>
+          	</li>
+          	      	</ul>
+
+	</body>
 </html>
\ No newline at end of file



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