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From l..@apache.org
Subject svn commit: r948065 [4/16] - in /websites/production/commons/content/proper/commons-math/xref-test: ./ org/apache/commons/math3/ org/apache/commons/math3/analysis/ org/apache/commons/math3/analysis/differentiation/ org/apache/commons/math3/analysis/fun...
Date Fri, 17 Apr 2015 19:49:15 GMT
Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/complex/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/complex/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/complex/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.complex</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.complex</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/complex/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/complex/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/complex/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.complex</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.complex</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/dfp/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/dfp/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/dfp/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.dfp</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.dfp</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/dfp/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/dfp/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/dfp/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.dfp</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.dfp</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/AbstractIntegerDistributionTest.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/AbstractIntegerDistributionTest.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/AbstractIntegerDistributionTest.html Fri Apr 17 19:49:06 2015
@@ -38,20 +38,20 @@
 <a class="jxr_linenumber" name="L30" href="#L30">30</a>      @Test
 <a class="jxr_linenumber" name="L31" href="#L31">31</a>      <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> testInverseCumulativeProbabilityMethod()
 <a class="jxr_linenumber" name="L32" href="#L32">32</a>      {
-<a class="jxr_linenumber" name="L33" href="#L33">33</a>      	<strong class="jxr_keyword">double</strong> precision = 0.000000000000001;
-<a class="jxr_linenumber" name="L34" href="#L34">34</a>      	Assert.assertEquals(1, diceDistribution.inverseCumulativeProbability(0));
-<a class="jxr_linenumber" name="L35" href="#L35">35</a>      	Assert.assertEquals(1, diceDistribution.inverseCumulativeProbability((1d-Double.MIN_VALUE)/6d));
-<a class="jxr_linenumber" name="L36" href="#L36">36</a>      	Assert.assertEquals(2, diceDistribution.inverseCumulativeProbability((1d+precision)/6d));
-<a class="jxr_linenumber" name="L37" href="#L37">37</a>      	Assert.assertEquals(2, diceDistribution.inverseCumulativeProbability((2d-Double.MIN_VALUE)/6d));
-<a class="jxr_linenumber" name="L38" href="#L38">38</a>      	Assert.assertEquals(3, diceDistribution.inverseCumulativeProbability((2d+precision)/6d));
-<a class="jxr_linenumber" name="L39" href="#L39">39</a>      	Assert.assertEquals(3, diceDistribution.inverseCumulativeProbability((3d-Double.MIN_VALUE)/6d));
-<a class="jxr_linenumber" name="L40" href="#L40">40</a>      	Assert.assertEquals(4, diceDistribution.inverseCumulativeProbability((3d+precision)/6d));
-<a class="jxr_linenumber" name="L41" href="#L41">41</a>      	Assert.assertEquals(4, diceDistribution.inverseCumulativeProbability((4d-Double.MIN_VALUE)/6d));
-<a class="jxr_linenumber" name="L42" href="#L42">42</a>      	Assert.assertEquals(5, diceDistribution.inverseCumulativeProbability((4d+precision)/6d));
-<a class="jxr_linenumber" name="L43" href="#L43">43</a>      	Assert.assertEquals(5, diceDistribution.inverseCumulativeProbability((5d-precision)/6d));<em class="jxr_comment">//Can't use Double.MIN</em>
-<a class="jxr_linenumber" name="L44" href="#L44">44</a>      	Assert.assertEquals(6, diceDistribution.inverseCumulativeProbability((5d+precision)/6d));
-<a class="jxr_linenumber" name="L45" href="#L45">45</a>      	Assert.assertEquals(6, diceDistribution.inverseCumulativeProbability((6d-precision)/6d));<em class="jxr_comment">//Can't use Double.MIN</em>
-<a class="jxr_linenumber" name="L46" href="#L46">46</a>      	Assert.assertEquals(6, diceDistribution.inverseCumulativeProbability((6d)/6d));
+<a class="jxr_linenumber" name="L33" href="#L33">33</a>          <strong class="jxr_keyword">double</strong> precision = 0.000000000000001;
+<a class="jxr_linenumber" name="L34" href="#L34">34</a>          Assert.assertEquals(1, diceDistribution.inverseCumulativeProbability(0));
+<a class="jxr_linenumber" name="L35" href="#L35">35</a>          Assert.assertEquals(1, diceDistribution.inverseCumulativeProbability((1d-Double.MIN_VALUE)/6d));
+<a class="jxr_linenumber" name="L36" href="#L36">36</a>          Assert.assertEquals(2, diceDistribution.inverseCumulativeProbability((1d+precision)/6d));
+<a class="jxr_linenumber" name="L37" href="#L37">37</a>          Assert.assertEquals(2, diceDistribution.inverseCumulativeProbability((2d-Double.MIN_VALUE)/6d));
+<a class="jxr_linenumber" name="L38" href="#L38">38</a>          Assert.assertEquals(3, diceDistribution.inverseCumulativeProbability((2d+precision)/6d));
+<a class="jxr_linenumber" name="L39" href="#L39">39</a>          Assert.assertEquals(3, diceDistribution.inverseCumulativeProbability((3d-Double.MIN_VALUE)/6d));
+<a class="jxr_linenumber" name="L40" href="#L40">40</a>          Assert.assertEquals(4, diceDistribution.inverseCumulativeProbability((3d+precision)/6d));
+<a class="jxr_linenumber" name="L41" href="#L41">41</a>          Assert.assertEquals(4, diceDistribution.inverseCumulativeProbability((4d-Double.MIN_VALUE)/6d));
+<a class="jxr_linenumber" name="L42" href="#L42">42</a>          Assert.assertEquals(5, diceDistribution.inverseCumulativeProbability((4d+precision)/6d));
+<a class="jxr_linenumber" name="L43" href="#L43">43</a>          Assert.assertEquals(5, diceDistribution.inverseCumulativeProbability((5d-precision)/6d));<em class="jxr_comment">//Can't use Double.MIN</em>
+<a class="jxr_linenumber" name="L44" href="#L44">44</a>          Assert.assertEquals(6, diceDistribution.inverseCumulativeProbability((5d+precision)/6d));
+<a class="jxr_linenumber" name="L45" href="#L45">45</a>          Assert.assertEquals(6, diceDistribution.inverseCumulativeProbability((6d-precision)/6d));<em class="jxr_comment">//Can't use Double.MIN</em>
+<a class="jxr_linenumber" name="L46" href="#L46">46</a>          Assert.assertEquals(6, diceDistribution.inverseCumulativeProbability((6d)/6d));
 <a class="jxr_linenumber" name="L47" href="#L47">47</a>      }
 <a class="jxr_linenumber" name="L48" href="#L48">48</a>  
 <a class="jxr_linenumber" name="L49" href="#L49">49</a>      @Test

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/TDistributionTest.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/TDistributionTest.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/TDistributionTest.html Fri Apr 17 19:49:06 2015
@@ -108,64 +108,76 @@
 <a class="jxr_linenumber" name="L100" href="#L100">100</a>                 <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[] {Double.NEGATIVE_INFINITY, Double.POSITIVE_INFINITY});
 <a class="jxr_linenumber" name="L101" href="#L101">101</a>         verifyInverseCumulativeProbabilities();
 <a class="jxr_linenumber" name="L102" href="#L102">102</a>     }
-<a class="jxr_linenumber" name="L103" href="#L103">103</a> 
+<a class="jxr_linenumber" name="L103" href="#L103">103</a>     
 <a class="jxr_linenumber" name="L104" href="#L104">104</a>     @Test
-<a class="jxr_linenumber" name="L105" href="#L105">105</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> testDfAccessors() {
-<a class="jxr_linenumber" name="L106" href="#L106">106</a>         TDistribution dist = (TDistribution) getDistribution();
-<a class="jxr_linenumber" name="L107" href="#L107">107</a>         Assert.assertEquals(5d, dist.getDegreesOfFreedom(), Double.MIN_VALUE);
-<a class="jxr_linenumber" name="L108" href="#L108">108</a>     }
-<a class="jxr_linenumber" name="L109" href="#L109">109</a> 
-<a class="jxr_linenumber" name="L110" href="#L110">110</a>     @Test(expected=NotStrictlyPositiveException.<strong class="jxr_keyword">class</strong>)
-<a class="jxr_linenumber" name="L111" href="#L111">111</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> testPreconditions() {
-<a class="jxr_linenumber" name="L112" href="#L112">112</a>         <strong class="jxr_keyword">new</strong> TDistribution(0);
-<a class="jxr_linenumber" name="L113" href="#L113">113</a>     }
-<a class="jxr_linenumber" name="L114" href="#L114">114</a> 
-<a class="jxr_linenumber" name="L115" href="#L115">115</a>     @Test
-<a class="jxr_linenumber" name="L116" href="#L116">116</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> testMoments() {
-<a class="jxr_linenumber" name="L117" href="#L117">117</a>         <strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong> tol = 1e-9;
-<a class="jxr_linenumber" name="L118" href="#L118">118</a>         TDistribution dist;
-<a class="jxr_linenumber" name="L119" href="#L119">119</a> 
-<a class="jxr_linenumber" name="L120" href="#L120">120</a>         dist = <strong class="jxr_keyword">new</strong> TDistribution(1);
-<a class="jxr_linenumber" name="L121" href="#L121">121</a>         Assert.assertTrue(Double.isNaN(dist.getNumericalMean()));
-<a class="jxr_linenumber" name="L122" href="#L122">122</a>         Assert.assertTrue(Double.isNaN(dist.getNumericalVariance()));
-<a class="jxr_linenumber" name="L123" href="#L123">123</a> 
-<a class="jxr_linenumber" name="L124" href="#L124">124</a>         dist = <strong class="jxr_keyword">new</strong> TDistribution(1.5);
-<a class="jxr_linenumber" name="L125" href="#L125">125</a>         Assert.assertEquals(dist.getNumericalMean(), 0, tol);
-<a class="jxr_linenumber" name="L126" href="#L126">126</a>         Assert.assertTrue(Double.isInfinite(dist.getNumericalVariance()));
-<a class="jxr_linenumber" name="L127" href="#L127">127</a> 
-<a class="jxr_linenumber" name="L128" href="#L128">128</a>         dist = <strong class="jxr_keyword">new</strong> TDistribution(5);
-<a class="jxr_linenumber" name="L129" href="#L129">129</a>         Assert.assertEquals(dist.getNumericalMean(), 0, tol);
-<a class="jxr_linenumber" name="L130" href="#L130">130</a>         Assert.assertEquals(dist.getNumericalVariance(), 5d / (5d - 2d), tol);
-<a class="jxr_linenumber" name="L131" href="#L131">131</a>     }
-<a class="jxr_linenumber" name="L132" href="#L132">132</a> 
-<a class="jxr_linenumber" name="L133" href="#L133">133</a>     <em class="jxr_comment">/*</em>
-<a class="jxr_linenumber" name="L134" href="#L134">134</a> <em class="jxr_comment">     * Adding this test to benchmark against tables published by NIST</em>
-<a class="jxr_linenumber" name="L135" href="#L135">135</a> <em class="jxr_comment">     * <a href="http://itl.nist.gov/div898/handbook/eda/section3/eda3672.ht" target="alexandria_uri">http://itl.nist.gov/div898/handbook/eda/section3/eda3672.ht</a>m</em>
-<a class="jxr_linenumber" name="L136" href="#L136">136</a> <em class="jxr_comment">     * Have chosen tabulated results for degrees of freedom 2,10,30,100</em>
-<a class="jxr_linenumber" name="L137" href="#L137">137</a> <em class="jxr_comment">     * Have chosen problevels from 0.10 to 0.001</em>
-<a class="jxr_linenumber" name="L138" href="#L138">138</a> <em class="jxr_comment">     */</em>
-<a class="jxr_linenumber" name="L139" href="#L139">139</a>     @Test
-<a class="jxr_linenumber" name="L140" href="#L140">140</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> nistData(){
-<a class="jxr_linenumber" name="L141" href="#L141">141</a>         <strong class="jxr_keyword">double</strong>[] prob = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[]{ 0.10,0.05,0.025,0.01,0.005,0.001};
-<a class="jxr_linenumber" name="L142" href="#L142">142</a>         <strong class="jxr_keyword">double</strong>[] args2 = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[]{1.886,2.920,4.303,6.965,9.925,22.327};
-<a class="jxr_linenumber" name="L143" href="#L143">143</a>         <strong class="jxr_keyword">double</strong>[] args10 = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[]{1.372,1.812,2.228,2.764,3.169,4.143};
-<a class="jxr_linenumber" name="L144" href="#L144">144</a>         <strong class="jxr_keyword">double</strong>[] args30 = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[]{1.310,1.697,2.042,2.457,2.750,3.385};
-<a class="jxr_linenumber" name="L145" href="#L145">145</a>         <strong class="jxr_keyword">double</strong>[] args100= <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[]{1.290,1.660,1.984,2.364,2.626,3.174};
-<a class="jxr_linenumber" name="L146" href="#L146">146</a>         TestUtils.assertEquals(prob, makeNistResults(args2, 2), 1.0e-4);
-<a class="jxr_linenumber" name="L147" href="#L147">147</a>         TestUtils.assertEquals(prob, makeNistResults(args10, 10), 1.0e-4);
-<a class="jxr_linenumber" name="L148" href="#L148">148</a>         TestUtils.assertEquals(prob, makeNistResults(args30, 30), 1.0e-4);
-<a class="jxr_linenumber" name="L149" href="#L149">149</a>         TestUtils.assertEquals(prob, makeNistResults(args100, 100), 1.0e-4);
-<a class="jxr_linenumber" name="L150" href="#L150">150</a>         <strong class="jxr_keyword">return</strong>;
-<a class="jxr_linenumber" name="L151" href="#L151">151</a>     }
-<a class="jxr_linenumber" name="L152" href="#L152">152</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">double</strong>[] makeNistResults(<strong class="jxr_keyword">double</strong>[] args, <strong class="jxr_keyword">int</strong> df){
-<a class="jxr_linenumber" name="L153" href="#L153">153</a>         TDistribution td =  <strong class="jxr_keyword">new</strong> TDistribution(df);
-<a class="jxr_linenumber" name="L154" href="#L154">154</a>         <strong class="jxr_keyword">double</strong>[] res  = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[ args.length ];
-<a class="jxr_linenumber" name="L155" href="#L155">155</a>         <strong class="jxr_keyword">for</strong>( <strong class="jxr_keyword">int</strong> i = 0 ; i &lt; res.length ; i++){
-<a class="jxr_linenumber" name="L156" href="#L156">156</a>             res[i] = 1.0 - td.cumulativeProbability(args[i]);
-<a class="jxr_linenumber" name="L157" href="#L157">157</a>         }
-<a class="jxr_linenumber" name="L158" href="#L158">158</a>         <strong class="jxr_keyword">return</strong> res;
-<a class="jxr_linenumber" name="L159" href="#L159">159</a>     }
-<a class="jxr_linenumber" name="L160" href="#L160">160</a> }
+<a class="jxr_linenumber" name="L105" href="#L105">105</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> testCumulativeProbablilityExtremes() {
+<a class="jxr_linenumber" name="L106" href="#L106">106</a>         TDistribution dist;
+<a class="jxr_linenumber" name="L107" href="#L107">107</a>         <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 1; i &lt; 11; i++) {
+<a class="jxr_linenumber" name="L108" href="#L108">108</a>             dist = <strong class="jxr_keyword">new</strong> TDistribution(i * 5);
+<a class="jxr_linenumber" name="L109" href="#L109">109</a>             Assert.assertEquals(1,
+<a class="jxr_linenumber" name="L110" href="#L110">110</a>                 dist.cumulativeProbability(Double.POSITIVE_INFINITY), Double.MIN_VALUE);
+<a class="jxr_linenumber" name="L111" href="#L111">111</a>             Assert.assertEquals(0,
+<a class="jxr_linenumber" name="L112" href="#L112">112</a>                 dist.cumulativeProbability(Double.NEGATIVE_INFINITY), Double.MIN_VALUE);
+<a class="jxr_linenumber" name="L113" href="#L113">113</a>         }   
+<a class="jxr_linenumber" name="L114" href="#L114">114</a>     }
+<a class="jxr_linenumber" name="L115" href="#L115">115</a> 
+<a class="jxr_linenumber" name="L116" href="#L116">116</a>     @Test
+<a class="jxr_linenumber" name="L117" href="#L117">117</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> testDfAccessors() {
+<a class="jxr_linenumber" name="L118" href="#L118">118</a>         TDistribution dist = (TDistribution) getDistribution();
+<a class="jxr_linenumber" name="L119" href="#L119">119</a>         Assert.assertEquals(5d, dist.getDegreesOfFreedom(), Double.MIN_VALUE);
+<a class="jxr_linenumber" name="L120" href="#L120">120</a>     }
+<a class="jxr_linenumber" name="L121" href="#L121">121</a> 
+<a class="jxr_linenumber" name="L122" href="#L122">122</a>     @Test(expected=NotStrictlyPositiveException.<strong class="jxr_keyword">class</strong>)
+<a class="jxr_linenumber" name="L123" href="#L123">123</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> testPreconditions() {
+<a class="jxr_linenumber" name="L124" href="#L124">124</a>         <strong class="jxr_keyword">new</strong> TDistribution(0);
+<a class="jxr_linenumber" name="L125" href="#L125">125</a>     }
+<a class="jxr_linenumber" name="L126" href="#L126">126</a> 
+<a class="jxr_linenumber" name="L127" href="#L127">127</a>     @Test
+<a class="jxr_linenumber" name="L128" href="#L128">128</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> testMoments() {
+<a class="jxr_linenumber" name="L129" href="#L129">129</a>         <strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">double</strong> tol = 1e-9;
+<a class="jxr_linenumber" name="L130" href="#L130">130</a>         TDistribution dist;
+<a class="jxr_linenumber" name="L131" href="#L131">131</a> 
+<a class="jxr_linenumber" name="L132" href="#L132">132</a>         dist = <strong class="jxr_keyword">new</strong> TDistribution(1);
+<a class="jxr_linenumber" name="L133" href="#L133">133</a>         Assert.assertTrue(Double.isNaN(dist.getNumericalMean()));
+<a class="jxr_linenumber" name="L134" href="#L134">134</a>         Assert.assertTrue(Double.isNaN(dist.getNumericalVariance()));
+<a class="jxr_linenumber" name="L135" href="#L135">135</a> 
+<a class="jxr_linenumber" name="L136" href="#L136">136</a>         dist = <strong class="jxr_keyword">new</strong> TDistribution(1.5);
+<a class="jxr_linenumber" name="L137" href="#L137">137</a>         Assert.assertEquals(dist.getNumericalMean(), 0, tol);
+<a class="jxr_linenumber" name="L138" href="#L138">138</a>         Assert.assertTrue(Double.isInfinite(dist.getNumericalVariance()));
+<a class="jxr_linenumber" name="L139" href="#L139">139</a> 
+<a class="jxr_linenumber" name="L140" href="#L140">140</a>         dist = <strong class="jxr_keyword">new</strong> TDistribution(5);
+<a class="jxr_linenumber" name="L141" href="#L141">141</a>         Assert.assertEquals(dist.getNumericalMean(), 0, tol);
+<a class="jxr_linenumber" name="L142" href="#L142">142</a>         Assert.assertEquals(dist.getNumericalVariance(), 5d / (5d - 2d), tol);
+<a class="jxr_linenumber" name="L143" href="#L143">143</a>     }
+<a class="jxr_linenumber" name="L144" href="#L144">144</a> 
+<a class="jxr_linenumber" name="L145" href="#L145">145</a>     <em class="jxr_comment">/*</em>
+<a class="jxr_linenumber" name="L146" href="#L146">146</a> <em class="jxr_comment">     * Adding this test to benchmark against tables published by NIST</em>
+<a class="jxr_linenumber" name="L147" href="#L147">147</a> <em class="jxr_comment">     * <a href="http://itl.nist.gov/div898/handbook/eda/section3/eda3672.ht" target="alexandria_uri">http://itl.nist.gov/div898/handbook/eda/section3/eda3672.ht</a>m</em>
+<a class="jxr_linenumber" name="L148" href="#L148">148</a> <em class="jxr_comment">     * Have chosen tabulated results for degrees of freedom 2,10,30,100</em>
+<a class="jxr_linenumber" name="L149" href="#L149">149</a> <em class="jxr_comment">     * Have chosen problevels from 0.10 to 0.001</em>
+<a class="jxr_linenumber" name="L150" href="#L150">150</a> <em class="jxr_comment">     */</em>
+<a class="jxr_linenumber" name="L151" href="#L151">151</a>     @Test
+<a class="jxr_linenumber" name="L152" href="#L152">152</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> nistData(){
+<a class="jxr_linenumber" name="L153" href="#L153">153</a>         <strong class="jxr_keyword">double</strong>[] prob = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[]{ 0.10,0.05,0.025,0.01,0.005,0.001};
+<a class="jxr_linenumber" name="L154" href="#L154">154</a>         <strong class="jxr_keyword">double</strong>[] args2 = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[]{1.886,2.920,4.303,6.965,9.925,22.327};
+<a class="jxr_linenumber" name="L155" href="#L155">155</a>         <strong class="jxr_keyword">double</strong>[] args10 = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[]{1.372,1.812,2.228,2.764,3.169,4.143};
+<a class="jxr_linenumber" name="L156" href="#L156">156</a>         <strong class="jxr_keyword">double</strong>[] args30 = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[]{1.310,1.697,2.042,2.457,2.750,3.385};
+<a class="jxr_linenumber" name="L157" href="#L157">157</a>         <strong class="jxr_keyword">double</strong>[] args100= <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[]{1.290,1.660,1.984,2.364,2.626,3.174};
+<a class="jxr_linenumber" name="L158" href="#L158">158</a>         TestUtils.assertEquals(prob, makeNistResults(args2, 2), 1.0e-4);
+<a class="jxr_linenumber" name="L159" href="#L159">159</a>         TestUtils.assertEquals(prob, makeNistResults(args10, 10), 1.0e-4);
+<a class="jxr_linenumber" name="L160" href="#L160">160</a>         TestUtils.assertEquals(prob, makeNistResults(args30, 30), 1.0e-4);
+<a class="jxr_linenumber" name="L161" href="#L161">161</a>         TestUtils.assertEquals(prob, makeNistResults(args100, 100), 1.0e-4);
+<a class="jxr_linenumber" name="L162" href="#L162">162</a>         <strong class="jxr_keyword">return</strong>;
+<a class="jxr_linenumber" name="L163" href="#L163">163</a>     }
+<a class="jxr_linenumber" name="L164" href="#L164">164</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">double</strong>[] makeNistResults(<strong class="jxr_keyword">double</strong>[] args, <strong class="jxr_keyword">int</strong> df){
+<a class="jxr_linenumber" name="L165" href="#L165">165</a>         TDistribution td =  <strong class="jxr_keyword">new</strong> TDistribution(df);
+<a class="jxr_linenumber" name="L166" href="#L166">166</a>         <strong class="jxr_keyword">double</strong>[] res  = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[ args.length ];
+<a class="jxr_linenumber" name="L167" href="#L167">167</a>         <strong class="jxr_keyword">for</strong>( <strong class="jxr_keyword">int</strong> i = 0 ; i &lt; res.length ; i++){
+<a class="jxr_linenumber" name="L168" href="#L168">168</a>             res[i] = 1.0 - td.cumulativeProbability(args[i]);
+<a class="jxr_linenumber" name="L169" href="#L169">169</a>         }
+<a class="jxr_linenumber" name="L170" href="#L170">170</a>         <strong class="jxr_keyword">return</strong> res;
+<a class="jxr_linenumber" name="L171" href="#L171">171</a>     }
+<a class="jxr_linenumber" name="L172" href="#L172">172</a> }
 </pre>
 <hr/>
 <div id="footer">Copyright &#169; 2003&#x2013;2015 <a href="http://www.apache.org/">The Apache Software Foundation</a>. All rights reserved.</div>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/fitting/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/fitting/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/fitting/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.distribution.fitting</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.distribution.fitting</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/fitting/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/fitting/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/fitting/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.distribution.fitting</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.distribution.fitting</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.distribution</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.distribution</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/distribution/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.distribution</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.distribution</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.exception</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.exception</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.exception</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.exception</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/util/LocalizedFormatsTest.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/util/LocalizedFormatsTest.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/util/LocalizedFormatsTest.html Fri Apr 17 19:49:06 2015
@@ -37,7 +37,7 @@
 <a class="jxr_linenumber" name="L29" href="#L29">29</a>  
 <a class="jxr_linenumber" name="L30" href="#L30">30</a>      @Test
 <a class="jxr_linenumber" name="L31" href="#L31">31</a>      <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> testMessageNumber() {
-<a class="jxr_linenumber" name="L32" href="#L32">32</a>          Assert.assertEquals(322, LocalizedFormats.values().length);
+<a class="jxr_linenumber" name="L32" href="#L32">32</a>          Assert.assertEquals(326, LocalizedFormats.values().length);
 <a class="jxr_linenumber" name="L33" href="#L33">33</a>      }
 <a class="jxr_linenumber" name="L34" href="#L34">34</a>  
 <a class="jxr_linenumber" name="L35" href="#L35">35</a>      @Test

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/util/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/util/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/util/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.exception.util</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.exception.util</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/util/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/util/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/exception/util/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.exception.util</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.exception.util</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/filter/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/filter/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/filter/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.filter</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.filter</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/filter/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/filter/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/filter/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.filter</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.filter</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fitting/leastsquares/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fitting/leastsquares/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fitting/leastsquares/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.fitting.leastsquares</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.fitting.leastsquares</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fitting/leastsquares/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fitting/leastsquares/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fitting/leastsquares/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.fitting.leastsquares</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.fitting.leastsquares</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fitting/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fitting/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fitting/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.fitting</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.fitting</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fitting/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fitting/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fitting/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.fitting</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.fitting</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fraction/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fraction/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fraction/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.fraction</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.fraction</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fraction/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fraction/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/fraction/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.fraction</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.fraction</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/genetics/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/genetics/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/genetics/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.genetics</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.genetics</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/genetics/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/genetics/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/genetics/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.genetics</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.genetics</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/enclosing/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/enclosing/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/enclosing/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.geometry.enclosing</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.geometry.enclosing</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/enclosing/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/enclosing/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/enclosing/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.geometry.enclosing</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.geometry.enclosing</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/euclidean/oned/package-frame.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/euclidean/oned/package-frame.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/euclidean/oned/package-frame.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.geometry.euclidean.oned</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.geometry.euclidean.oned</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Modified: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/euclidean/oned/package-summary.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/euclidean/oned/package-summary.html (original)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/euclidean/oned/package-summary.html Fri Apr 17 19:49:06 2015
@@ -3,7 +3,7 @@
 <html xml:lang="en" lang="en">
 	<head>
 		<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-		<title>Apache Commons Math 3.4.1 Reference Package org.apache.commons.math3.geometry.euclidean.oned</title>
+		<title>Apache Commons Math 3.5 Reference Package org.apache.commons.math3.geometry.euclidean.oned</title>
 		<link rel="stylesheet" type="text/css" href="../../../../../../../stylesheet.css" title="style" />
 	</head>
 	<body>

Added: websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html
==============================================================================
--- websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html (added)
+++ websites/production/commons/content/proper/commons-math/xref-test/org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html Fri Apr 17 19:49:06 2015
@@ -0,0 +1,303 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+<head><meta http-equiv="content-type" content="text/html; charset=UTF-8" />
+<title>PLYParser xref</title>
+<link type="text/css" rel="stylesheet" href="../../../../../../../stylesheet.css" />
+</head>
+<body>
+<div id="overview"><a href="../../../../../../../../testapidocs/org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html">View Javadoc</a></div><pre>
+<a class="jxr_linenumber" name="L1" href="#L1">1</a>   <em class="jxr_comment">/*</em>
+<a class="jxr_linenumber" name="L2" href="#L2">2</a>   <em class="jxr_comment"> * Licensed to the Apache Software Foundation (ASF) under one or more</em>
+<a class="jxr_linenumber" name="L3" href="#L3">3</a>   <em class="jxr_comment"> * contributor license agreements.  See the NOTICE file distributed with</em>
+<a class="jxr_linenumber" name="L4" href="#L4">4</a>   <em class="jxr_comment"> * this work for additional information regarding copyright ownership.</em>
+<a class="jxr_linenumber" name="L5" href="#L5">5</a>   <em class="jxr_comment"> * The ASF licenses this file to You under the Apache License, Version 2.0</em>
+<a class="jxr_linenumber" name="L6" href="#L6">6</a>   <em class="jxr_comment"> * (the "License"); you may not use this file except in compliance with</em>
+<a class="jxr_linenumber" name="L7" href="#L7">7</a>   <em class="jxr_comment"> * the License.  You may obtain a copy of the License at</em>
+<a class="jxr_linenumber" name="L8" href="#L8">8</a>   <em class="jxr_comment"> *</em>
+<a class="jxr_linenumber" name="L9" href="#L9">9</a>   <em class="jxr_comment"> *      <a href="http://www.apache.org/licenses/LICENSE-2." target="alexandria_uri">http://www.apache.org/licenses/LICENSE-2.</a>0</em>
+<a class="jxr_linenumber" name="L10" href="#L10">10</a>  <em class="jxr_comment"> *</em>
+<a class="jxr_linenumber" name="L11" href="#L11">11</a>  <em class="jxr_comment"> * Unless required by applicable law or agreed to in writing, software</em>
+<a class="jxr_linenumber" name="L12" href="#L12">12</a>  <em class="jxr_comment"> * distributed under the License is distributed on an "AS IS" BASIS,</em>
+<a class="jxr_linenumber" name="L13" href="#L13">13</a>  <em class="jxr_comment"> * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.</em>
+<a class="jxr_linenumber" name="L14" href="#L14">14</a>  <em class="jxr_comment"> * See the License for the specific language governing permissions and</em>
+<a class="jxr_linenumber" name="L15" href="#L15">15</a>  <em class="jxr_comment"> * limitations under the License.</em>
+<a class="jxr_linenumber" name="L16" href="#L16">16</a>  <em class="jxr_comment"> */</em>
+<a class="jxr_linenumber" name="L17" href="#L17">17</a>  <strong class="jxr_keyword">package</strong> org.apache.commons.math3.geometry.euclidean.threed;
+<a class="jxr_linenumber" name="L18" href="#L18">18</a>  
+<a class="jxr_linenumber" name="L19" href="#L19">19</a>  <strong class="jxr_keyword">import</strong> java.io.BufferedReader;
+<a class="jxr_linenumber" name="L20" href="#L20">20</a>  <strong class="jxr_keyword">import</strong> java.io.EOFException;
+<a class="jxr_linenumber" name="L21" href="#L21">21</a>  <strong class="jxr_keyword">import</strong> java.io.IOException;
+<a class="jxr_linenumber" name="L22" href="#L22">22</a>  <strong class="jxr_keyword">import</strong> java.io.InputStream;
+<a class="jxr_linenumber" name="L23" href="#L23">23</a>  <strong class="jxr_keyword">import</strong> java.io.InputStreamReader;
+<a class="jxr_linenumber" name="L24" href="#L24">24</a>  <strong class="jxr_keyword">import</strong> java.text.ParseException;
+<a class="jxr_linenumber" name="L25" href="#L25">25</a>  <strong class="jxr_keyword">import</strong> java.util.ArrayList;
+<a class="jxr_linenumber" name="L26" href="#L26">26</a>  <strong class="jxr_keyword">import</strong> java.util.Arrays;
+<a class="jxr_linenumber" name="L27" href="#L27">27</a>  <strong class="jxr_keyword">import</strong> java.util.List;
+<a class="jxr_linenumber" name="L28" href="#L28">28</a>  <strong class="jxr_keyword">import</strong> java.util.StringTokenizer;
+<a class="jxr_linenumber" name="L29" href="#L29">29</a>  
+<a class="jxr_linenumber" name="L30" href="#L30">30</a>  <strong class="jxr_keyword">import</strong> org.apache.commons.math3.util.Precision;
+<a class="jxr_linenumber" name="L31" href="#L31">31</a>  
+<a class="jxr_linenumber" name="L32" href="#L32">32</a>  <em class="jxr_javadoccomment">/** This class is a small and incomplete parser for PLY files.</em>
+<a class="jxr_linenumber" name="L33" href="#L33">33</a>  <em class="jxr_javadoccomment"> * &lt;p&gt;</em>
+<a class="jxr_linenumber" name="L34" href="#L34">34</a>  <em class="jxr_javadoccomment"> * This parser is only intended for test purposes, it does not</em>
+<a class="jxr_linenumber" name="L35" href="#L35">35</a>  <em class="jxr_javadoccomment"> * parse the full header, it does not handle all properties,</em>
+<a class="jxr_linenumber" name="L36" href="#L36">36</a>  <em class="jxr_javadoccomment"> * it has rudimentary error handling.</em>
+<a class="jxr_linenumber" name="L37" href="#L37">37</a>  <em class="jxr_javadoccomment"> * &lt;/p&gt;</em>
+<a class="jxr_linenumber" name="L38" href="#L38">38</a>  <em class="jxr_javadoccomment"> * @since 3.5</em>
+<a class="jxr_linenumber" name="L39" href="#L39">39</a>  <em class="jxr_javadoccomment"> */</em>
+<a class="jxr_linenumber" name="L40" href="#L40">40</a>  <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">class</strong> <a href="../../../../../../../org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html">PLYParser</a> {
+<a class="jxr_linenumber" name="L41" href="#L41">41</a>  
+<a class="jxr_linenumber" name="L42" href="#L42">42</a>      <em class="jxr_javadoccomment">/** Parsed vertices. */</em>
+<a class="jxr_linenumber" name="L43" href="#L43">43</a>      <strong class="jxr_keyword">private</strong> Vector3D[] vertices;
+<a class="jxr_linenumber" name="L44" href="#L44">44</a>  
+<a class="jxr_linenumber" name="L45" href="#L45">45</a>      <em class="jxr_javadoccomment">/** Parsed faces. */</em>
+<a class="jxr_linenumber" name="L46" href="#L46">46</a>      <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">int</strong>[][] faces;
+<a class="jxr_linenumber" name="L47" href="#L47">47</a>  
+<a class="jxr_linenumber" name="L48" href="#L48">48</a>      <em class="jxr_javadoccomment">/** Reader for PLY data. */</em>
+<a class="jxr_linenumber" name="L49" href="#L49">49</a>      <strong class="jxr_keyword">private</strong> BufferedReader br;
+<a class="jxr_linenumber" name="L50" href="#L50">50</a>  
+<a class="jxr_linenumber" name="L51" href="#L51">51</a>      <em class="jxr_javadoccomment">/** Last parsed line. */</em>
+<a class="jxr_linenumber" name="L52" href="#L52">52</a>      <strong class="jxr_keyword">private</strong> String line;
+<a class="jxr_linenumber" name="L53" href="#L53">53</a>  
+<a class="jxr_linenumber" name="L54" href="#L54">54</a>      <em class="jxr_javadoccomment">/** Simple constructor.</em>
+<a class="jxr_linenumber" name="L55" href="#L55">55</a>  <em class="jxr_javadoccomment">     * @param stream stream to parse (closing it remains caller responsibility)</em>
+<a class="jxr_linenumber" name="L56" href="#L56">56</a>  <em class="jxr_javadoccomment">     * @exception IOException if stream cannot be read</em>
+<a class="jxr_linenumber" name="L57" href="#L57">57</a>  <em class="jxr_javadoccomment">     * @exception ParseException if stream content cannot be parsed</em>
+<a class="jxr_linenumber" name="L58" href="#L58">58</a>  <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L59" href="#L59">59</a>      <strong class="jxr_keyword">public</strong> <a href="../../../../../../../org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html">PLYParser</a>(<strong class="jxr_keyword">final</strong> InputStream stream)
+<a class="jxr_linenumber" name="L60" href="#L60">60</a>          <strong class="jxr_keyword">throws</strong> IOException, ParseException {
+<a class="jxr_linenumber" name="L61" href="#L61">61</a>  
+<a class="jxr_linenumber" name="L62" href="#L62">62</a>          <strong class="jxr_keyword">try</strong> {
+<a class="jxr_linenumber" name="L63" href="#L63">63</a>              br = <strong class="jxr_keyword">new</strong> BufferedReader(<strong class="jxr_keyword">new</strong> InputStreamReader(stream, <span class="jxr_string">"UTF-8"</span>));
+<a class="jxr_linenumber" name="L64" href="#L64">64</a>  
+<a class="jxr_linenumber" name="L65" href="#L65">65</a>              <em class="jxr_comment">// parse the header</em>
+<a class="jxr_linenumber" name="L66" href="#L66">66</a>              List&lt;Field&gt; fields = parseNextLine();
+<a class="jxr_linenumber" name="L67" href="#L67">67</a>              <strong class="jxr_keyword">if</strong> (fields.size() != 1 || fields.get(0).getToken() != Token.PLY) {
+<a class="jxr_linenumber" name="L68" href="#L68">68</a>                  complain();
+<a class="jxr_linenumber" name="L69" href="#L69">69</a>              }
+<a class="jxr_linenumber" name="L70" href="#L70">70</a>  
+<a class="jxr_linenumber" name="L71" href="#L71">71</a>              <strong class="jxr_keyword">boolean</strong> parsing       = <strong class="jxr_keyword">true</strong>;
+<a class="jxr_linenumber" name="L72" href="#L72">72</a>              <strong class="jxr_keyword">int</strong> nbVertices        = -1;
+<a class="jxr_linenumber" name="L73" href="#L73">73</a>              <strong class="jxr_keyword">int</strong> nbFaces           = -1;
+<a class="jxr_linenumber" name="L74" href="#L74">74</a>              <strong class="jxr_keyword">int</strong> xIndex            = -1;
+<a class="jxr_linenumber" name="L75" href="#L75">75</a>              <strong class="jxr_keyword">int</strong> yIndex            = -1;
+<a class="jxr_linenumber" name="L76" href="#L76">76</a>              <strong class="jxr_keyword">int</strong> zIndex            = -1;
+<a class="jxr_linenumber" name="L77" href="#L77">77</a>              <strong class="jxr_keyword">int</strong> vPropertiesNumber = -1;
+<a class="jxr_linenumber" name="L78" href="#L78">78</a>              <strong class="jxr_keyword">boolean</strong> inVertexElt   = false;
+<a class="jxr_linenumber" name="L79" href="#L79">79</a>              <strong class="jxr_keyword">boolean</strong> inFaceElt     = false;
+<a class="jxr_linenumber" name="L80" href="#L80">80</a>              <strong class="jxr_keyword">while</strong> (parsing) {
+<a class="jxr_linenumber" name="L81" href="#L81">81</a>                  fields = parseNextLine();
+<a class="jxr_linenumber" name="L82" href="#L82">82</a>                  <strong class="jxr_keyword">if</strong> (fields.size() &lt; 1) {
+<a class="jxr_linenumber" name="L83" href="#L83">83</a>                      complain();
+<a class="jxr_linenumber" name="L84" href="#L84">84</a>                  }
+<a class="jxr_linenumber" name="L85" href="#L85">85</a>                  <strong class="jxr_keyword">switch</strong> (fields.get(0).getToken()) {
+<a class="jxr_linenumber" name="L86" href="#L86">86</a>                      <strong class="jxr_keyword">case</strong> FORMAT:
+<a class="jxr_linenumber" name="L87" href="#L87">87</a>                          <strong class="jxr_keyword">if</strong> (fields.size() != 3 ||
+<a class="jxr_linenumber" name="L88" href="#L88">88</a>                          fields.get(1).getToken() != Token.ASCII ||
+<a class="jxr_linenumber" name="L89" href="#L89">89</a>                          fields.get(2).getToken() != Token.UNKNOWN ||
+<a class="jxr_linenumber" name="L90" href="#L90">90</a>                          !Precision.equals(Double.parseDouble(fields.get(2).getValue()), 1.0, 0.001)) {
+<a class="jxr_linenumber" name="L91" href="#L91">91</a>                              complain();
+<a class="jxr_linenumber" name="L92" href="#L92">92</a>                          }
+<a class="jxr_linenumber" name="L93" href="#L93">93</a>                          inVertexElt = false;
+<a class="jxr_linenumber" name="L94" href="#L94">94</a>                          inFaceElt   = false;
+<a class="jxr_linenumber" name="L95" href="#L95">95</a>                          <strong class="jxr_keyword">break</strong>;
+<a class="jxr_linenumber" name="L96" href="#L96">96</a>                      <strong class="jxr_keyword">case</strong> COMMENT:
+<a class="jxr_linenumber" name="L97" href="#L97">97</a>                          <em class="jxr_comment">// we just ignore this line</em>
+<a class="jxr_linenumber" name="L98" href="#L98">98</a>                          <strong class="jxr_keyword">break</strong>;
+<a class="jxr_linenumber" name="L99" href="#L99">99</a>                      <strong class="jxr_keyword">case</strong> ELEMENT:
+<a class="jxr_linenumber" name="L100" href="#L100">100</a>                         <strong class="jxr_keyword">if</strong> (fields.size() != 3 ||
+<a class="jxr_linenumber" name="L101" href="#L101">101</a>                         (fields.get(1).getToken() != Token.VERTEX &amp;&amp; fields.get(1).getToken() != Token.FACE) ||
+<a class="jxr_linenumber" name="L102" href="#L102">102</a>                         fields.get(2).getToken() != Token.UNKNOWN) {
+<a class="jxr_linenumber" name="L103" href="#L103">103</a>                             complain();
+<a class="jxr_linenumber" name="L104" href="#L104">104</a>                         }
+<a class="jxr_linenumber" name="L105" href="#L105">105</a>                         <strong class="jxr_keyword">if</strong> (fields.get(1).getToken() == Token.VERTEX) {
+<a class="jxr_linenumber" name="L106" href="#L106">106</a>                             nbVertices  = Integer.parseInt(fields.get(2).getValue());
+<a class="jxr_linenumber" name="L107" href="#L107">107</a>                             inVertexElt = <strong class="jxr_keyword">true</strong>;
+<a class="jxr_linenumber" name="L108" href="#L108">108</a>                             inFaceElt   = false;
+<a class="jxr_linenumber" name="L109" href="#L109">109</a>                         } <strong class="jxr_keyword">else</strong> {
+<a class="jxr_linenumber" name="L110" href="#L110">110</a>                             nbFaces     = Integer.parseInt(fields.get(2).getValue());
+<a class="jxr_linenumber" name="L111" href="#L111">111</a>                             inVertexElt = false;
+<a class="jxr_linenumber" name="L112" href="#L112">112</a>                             inFaceElt   = <strong class="jxr_keyword">true</strong>;
+<a class="jxr_linenumber" name="L113" href="#L113">113</a>                         }
+<a class="jxr_linenumber" name="L114" href="#L114">114</a>                         <strong class="jxr_keyword">break</strong>;
+<a class="jxr_linenumber" name="L115" href="#L115">115</a>                     <strong class="jxr_keyword">case</strong> PROPERTY:
+<a class="jxr_linenumber" name="L116" href="#L116">116</a>                         <strong class="jxr_keyword">if</strong> (inVertexElt) {
+<a class="jxr_linenumber" name="L117" href="#L117">117</a>                             ++vPropertiesNumber;
+<a class="jxr_linenumber" name="L118" href="#L118">118</a>                             <strong class="jxr_keyword">if</strong> (fields.size() != 3 ||
+<a class="jxr_linenumber" name="L119" href="#L119">119</a>                                 (fields.get(1).getToken() != Token.CHAR   &amp;&amp;
+<a class="jxr_linenumber" name="L120" href="#L120">120</a>                                  fields.get(1).getToken() != Token.UCHAR  &amp;&amp;
+<a class="jxr_linenumber" name="L121" href="#L121">121</a>                                  fields.get(1).getToken() != Token.SHORT  &amp;&amp;
+<a class="jxr_linenumber" name="L122" href="#L122">122</a>                                  fields.get(1).getToken() != Token.USHORT &amp;&amp;
+<a class="jxr_linenumber" name="L123" href="#L123">123</a>                                  fields.get(1).getToken() != Token.INT    &amp;&amp;
+<a class="jxr_linenumber" name="L124" href="#L124">124</a>                                  fields.get(1).getToken() != Token.UINT   &amp;&amp;
+<a class="jxr_linenumber" name="L125" href="#L125">125</a>                                  fields.get(1).getToken() != Token.FLOAT  &amp;&amp;
+<a class="jxr_linenumber" name="L126" href="#L126">126</a>                                  fields.get(1).getToken() != Token.DOUBLE)) {
+<a class="jxr_linenumber" name="L127" href="#L127">127</a>                                 complain();
+<a class="jxr_linenumber" name="L128" href="#L128">128</a>                             }
+<a class="jxr_linenumber" name="L129" href="#L129">129</a>                             <strong class="jxr_keyword">if</strong> (fields.get(2).getToken() == Token.X) {
+<a class="jxr_linenumber" name="L130" href="#L130">130</a>                                 xIndex = vPropertiesNumber;
+<a class="jxr_linenumber" name="L131" href="#L131">131</a>                             }<strong class="jxr_keyword">else</strong> <strong class="jxr_keyword">if</strong> (fields.get(2).getToken() == Token.Y) {
+<a class="jxr_linenumber" name="L132" href="#L132">132</a>                                 yIndex = vPropertiesNumber;
+<a class="jxr_linenumber" name="L133" href="#L133">133</a>                             }<strong class="jxr_keyword">else</strong> <strong class="jxr_keyword">if</strong> (fields.get(2).getToken() == Token.Z) {
+<a class="jxr_linenumber" name="L134" href="#L134">134</a>                                 zIndex = vPropertiesNumber;
+<a class="jxr_linenumber" name="L135" href="#L135">135</a>                             }
+<a class="jxr_linenumber" name="L136" href="#L136">136</a>                         } <strong class="jxr_keyword">else</strong> <strong class="jxr_keyword">if</strong> (inFaceElt) {
+<a class="jxr_linenumber" name="L137" href="#L137">137</a>                             <strong class="jxr_keyword">if</strong> (fields.size() != 5 ||
+<a class="jxr_linenumber" name="L138" href="#L138">138</a>                                 fields.get(1).getToken()  != Token.LIST   &amp;&amp;
+<a class="jxr_linenumber" name="L139" href="#L139">139</a>                                 (fields.get(2).getToken() != Token.CHAR   &amp;&amp;
+<a class="jxr_linenumber" name="L140" href="#L140">140</a>                                  fields.get(2).getToken() != Token.UCHAR  &amp;&amp;
+<a class="jxr_linenumber" name="L141" href="#L141">141</a>                                  fields.get(2).getToken() != Token.SHORT  &amp;&amp;
+<a class="jxr_linenumber" name="L142" href="#L142">142</a>                                  fields.get(2).getToken() != Token.USHORT &amp;&amp;
+<a class="jxr_linenumber" name="L143" href="#L143">143</a>                                  fields.get(2).getToken() != Token.INT    &amp;&amp;
+<a class="jxr_linenumber" name="L144" href="#L144">144</a>                                  fields.get(2).getToken() != Token.UINT) ||
+<a class="jxr_linenumber" name="L145" href="#L145">145</a>                                 (fields.get(3).getToken() != Token.CHAR   &amp;&amp;
+<a class="jxr_linenumber" name="L146" href="#L146">146</a>                                  fields.get(3).getToken() != Token.UCHAR  &amp;&amp;
+<a class="jxr_linenumber" name="L147" href="#L147">147</a>                                  fields.get(3).getToken() != Token.SHORT  &amp;&amp;
+<a class="jxr_linenumber" name="L148" href="#L148">148</a>                                  fields.get(3).getToken() != Token.USHORT &amp;&amp;
+<a class="jxr_linenumber" name="L149" href="#L149">149</a>                                  fields.get(3).getToken() != Token.INT    &amp;&amp;
+<a class="jxr_linenumber" name="L150" href="#L150">150</a>                                  fields.get(3).getToken() != Token.UINT) ||
+<a class="jxr_linenumber" name="L151" href="#L151">151</a>                                  fields.get(4).getToken() != Token.VERTEX_INDICES) {
+<a class="jxr_linenumber" name="L152" href="#L152">152</a>                                 complain();
+<a class="jxr_linenumber" name="L153" href="#L153">153</a>                             }
+<a class="jxr_linenumber" name="L154" href="#L154">154</a>                         } <strong class="jxr_keyword">else</strong> {
+<a class="jxr_linenumber" name="L155" href="#L155">155</a>                             complain();
+<a class="jxr_linenumber" name="L156" href="#L156">156</a>                         }
+<a class="jxr_linenumber" name="L157" href="#L157">157</a>                         <strong class="jxr_keyword">break</strong>;
+<a class="jxr_linenumber" name="L158" href="#L158">158</a>                     <strong class="jxr_keyword">case</strong> END_HEADER:
+<a class="jxr_linenumber" name="L159" href="#L159">159</a>                         inVertexElt = false;
+<a class="jxr_linenumber" name="L160" href="#L160">160</a>                         inFaceElt   = false;
+<a class="jxr_linenumber" name="L161" href="#L161">161</a>                         parsing     = false;
+<a class="jxr_linenumber" name="L162" href="#L162">162</a>                         <strong class="jxr_keyword">break</strong>;
+<a class="jxr_linenumber" name="L163" href="#L163">163</a>                     <strong class="jxr_keyword">default</strong>:
+<a class="jxr_linenumber" name="L164" href="#L164">164</a>                         <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> ParseException(<span class="jxr_string">"unable to parse line: "</span> + line, 0);
+<a class="jxr_linenumber" name="L165" href="#L165">165</a>                 }
+<a class="jxr_linenumber" name="L166" href="#L166">166</a>             }
+<a class="jxr_linenumber" name="L167" href="#L167">167</a>             ++vPropertiesNumber;
+<a class="jxr_linenumber" name="L168" href="#L168">168</a> 
+<a class="jxr_linenumber" name="L169" href="#L169">169</a>             <em class="jxr_comment">// parse vertices</em>
+<a class="jxr_linenumber" name="L170" href="#L170">170</a>             vertices = <strong class="jxr_keyword">new</strong> Vector3D[nbVertices];
+<a class="jxr_linenumber" name="L171" href="#L171">171</a>             <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0; i &lt; nbVertices; ++i) {
+<a class="jxr_linenumber" name="L172" href="#L172">172</a>                 fields = parseNextLine();
+<a class="jxr_linenumber" name="L173" href="#L173">173</a>                 <strong class="jxr_keyword">if</strong> (fields.size() != vPropertiesNumber ||
+<a class="jxr_linenumber" name="L174" href="#L174">174</a>                     fields.get(xIndex).getToken() != Token.UNKNOWN ||
+<a class="jxr_linenumber" name="L175" href="#L175">175</a>                     fields.get(yIndex).getToken() != Token.UNKNOWN ||
+<a class="jxr_linenumber" name="L176" href="#L176">176</a>                     fields.get(zIndex).getToken() != Token.UNKNOWN) {
+<a class="jxr_linenumber" name="L177" href="#L177">177</a>                     complain();
+<a class="jxr_linenumber" name="L178" href="#L178">178</a>                 }
+<a class="jxr_linenumber" name="L179" href="#L179">179</a>                 vertices[i] = <strong class="jxr_keyword">new</strong> Vector3D(Double.parseDouble(fields.get(xIndex).getValue()),
+<a class="jxr_linenumber" name="L180" href="#L180">180</a>                                            Double.parseDouble(fields.get(yIndex).getValue()),
+<a class="jxr_linenumber" name="L181" href="#L181">181</a>                                            Double.parseDouble(fields.get(zIndex).getValue()));
+<a class="jxr_linenumber" name="L182" href="#L182">182</a>             }
+<a class="jxr_linenumber" name="L183" href="#L183">183</a> 
+<a class="jxr_linenumber" name="L184" href="#L184">184</a>             <em class="jxr_comment">// parse faces</em>
+<a class="jxr_linenumber" name="L185" href="#L185">185</a>             faces = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">int</strong>[nbFaces][];
+<a class="jxr_linenumber" name="L186" href="#L186">186</a>             <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0; i &lt; nbFaces; ++i) {
+<a class="jxr_linenumber" name="L187" href="#L187">187</a>                 fields = parseNextLine();
+<a class="jxr_linenumber" name="L188" href="#L188">188</a>                 <strong class="jxr_keyword">if</strong> (fields.isEmpty() ||
+<a class="jxr_linenumber" name="L189" href="#L189">189</a>                     fields.size() != (Integer.parseInt(fields.get(0).getValue()) + 1)) {
+<a class="jxr_linenumber" name="L190" href="#L190">190</a>                     complain();
+<a class="jxr_linenumber" name="L191" href="#L191">191</a>                 }
+<a class="jxr_linenumber" name="L192" href="#L192">192</a>                 faces[i] = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">int</strong>[fields.size() - 1];
+<a class="jxr_linenumber" name="L193" href="#L193">193</a>                 <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> j = 0; j &lt; faces[i].length; ++j) {
+<a class="jxr_linenumber" name="L194" href="#L194">194</a>                     faces[i][j] = Integer.parseInt(fields.get(j + 1).getValue());
+<a class="jxr_linenumber" name="L195" href="#L195">195</a>                 }
+<a class="jxr_linenumber" name="L196" href="#L196">196</a>             }
+<a class="jxr_linenumber" name="L197" href="#L197">197</a> 
+<a class="jxr_linenumber" name="L198" href="#L198">198</a>         } <strong class="jxr_keyword">catch</strong> (NumberFormatException nfe) {
+<a class="jxr_linenumber" name="L199" href="#L199">199</a>             complain();
+<a class="jxr_linenumber" name="L200" href="#L200">200</a>         }
+<a class="jxr_linenumber" name="L201" href="#L201">201</a>     }
+<a class="jxr_linenumber" name="L202" href="#L202">202</a> 
+<a class="jxr_linenumber" name="L203" href="#L203">203</a>     <em class="jxr_javadoccomment">/** Complain about a bad line.</em>
+<a class="jxr_linenumber" name="L204" href="#L204">204</a> <em class="jxr_javadoccomment">     * @exception ParseException always thrown</em>
+<a class="jxr_linenumber" name="L205" href="#L205">205</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L206" href="#L206">206</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">void</strong> complain() <strong class="jxr_keyword">throws</strong> ParseException {
+<a class="jxr_linenumber" name="L207" href="#L207">207</a>         <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> ParseException(<span class="jxr_string">"unable to parse line: "</span> + line, 0);
+<a class="jxr_linenumber" name="L208" href="#L208">208</a>     }
+<a class="jxr_linenumber" name="L209" href="#L209">209</a> 
+<a class="jxr_linenumber" name="L210" href="#L210">210</a>     <em class="jxr_javadoccomment">/** Parse next line.</em>
+<a class="jxr_linenumber" name="L211" href="#L211">211</a> <em class="jxr_javadoccomment">     * @return parsed fields</em>
+<a class="jxr_linenumber" name="L212" href="#L212">212</a> <em class="jxr_javadoccomment">     * @exception IOException if stream cannot be read</em>
+<a class="jxr_linenumber" name="L213" href="#L213">213</a> <em class="jxr_javadoccomment">     * @exception ParseException if the line does not contain the expected number of fields</em>
+<a class="jxr_linenumber" name="L214" href="#L214">214</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L215" href="#L215">215</a>     <strong class="jxr_keyword">private</strong> List&lt;Field&gt; parseNextLine()
+<a class="jxr_linenumber" name="L216" href="#L216">216</a>         <strong class="jxr_keyword">throws</strong> IOException, ParseException {
+<a class="jxr_linenumber" name="L217" href="#L217">217</a>         <strong class="jxr_keyword">final</strong> List&lt;Field&gt; fields = <strong class="jxr_keyword">new</strong> ArrayList&lt;Field&gt;();
+<a class="jxr_linenumber" name="L218" href="#L218">218</a>         line = br.readLine();
+<a class="jxr_linenumber" name="L219" href="#L219">219</a>         <strong class="jxr_keyword">if</strong> (line == <strong class="jxr_keyword">null</strong>) {
+<a class="jxr_linenumber" name="L220" href="#L220">220</a>             <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> EOFException();
+<a class="jxr_linenumber" name="L221" href="#L221">221</a>         }
+<a class="jxr_linenumber" name="L222" href="#L222">222</a>         <strong class="jxr_keyword">final</strong> StringTokenizer tokenizer = <strong class="jxr_keyword">new</strong> StringTokenizer(line);
+<a class="jxr_linenumber" name="L223" href="#L223">223</a>         <strong class="jxr_keyword">while</strong> (tokenizer.hasMoreTokens()) {
+<a class="jxr_linenumber" name="L224" href="#L224">224</a>             fields.add(<strong class="jxr_keyword">new</strong> <a href="../../../../../../../org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html">Field</a>(tokenizer.nextToken()));
+<a class="jxr_linenumber" name="L225" href="#L225">225</a>         }
+<a class="jxr_linenumber" name="L226" href="#L226">226</a>         <strong class="jxr_keyword">return</strong> fields;
+<a class="jxr_linenumber" name="L227" href="#L227">227</a>     }
+<a class="jxr_linenumber" name="L228" href="#L228">228</a> 
+<a class="jxr_linenumber" name="L229" href="#L229">229</a>     <em class="jxr_javadoccomment">/** Get the parsed vertices.</em>
+<a class="jxr_linenumber" name="L230" href="#L230">230</a> <em class="jxr_javadoccomment">     * @return parsed vertices</em>
+<a class="jxr_linenumber" name="L231" href="#L231">231</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L232" href="#L232">232</a>     <strong class="jxr_keyword">public</strong> List&lt;Vector3D&gt; getVertices() {
+<a class="jxr_linenumber" name="L233" href="#L233">233</a>         <strong class="jxr_keyword">return</strong> Arrays.asList(vertices);
+<a class="jxr_linenumber" name="L234" href="#L234">234</a>     }
+<a class="jxr_linenumber" name="L235" href="#L235">235</a> 
+<a class="jxr_linenumber" name="L236" href="#L236">236</a>     <em class="jxr_javadoccomment">/** Get the parsed faces.</em>
+<a class="jxr_linenumber" name="L237" href="#L237">237</a> <em class="jxr_javadoccomment">     * @return parsed faces</em>
+<a class="jxr_linenumber" name="L238" href="#L238">238</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L239" href="#L239">239</a>     <strong class="jxr_keyword">public</strong> List&lt;<strong class="jxr_keyword">int</strong>[]&gt; getFaces() {
+<a class="jxr_linenumber" name="L240" href="#L240">240</a>         <strong class="jxr_keyword">return</strong> Arrays.asList(faces);
+<a class="jxr_linenumber" name="L241" href="#L241">241</a>     }
+<a class="jxr_linenumber" name="L242" href="#L242">242</a> 
+<a class="jxr_linenumber" name="L243" href="#L243">243</a>     <em class="jxr_javadoccomment">/** Tokens from PLY files. */</em>
+<a class="jxr_linenumber" name="L244" href="#L244">244</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">static</strong> enum <a href="../../../../../../../org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html">Token</a> {
+<a class="jxr_linenumber" name="L245" href="#L245">245</a>         PLY, FORMAT, ASCII, BINARY_BIG_ENDIAN, BINARY_LITTLE_ENDIAN,
+<a class="jxr_linenumber" name="L246" href="#L246">246</a>         COMMENT, ELEMENT, VERTEX, FACE, PROPERTY, LIST, OBJ_INFO,
+<a class="jxr_linenumber" name="L247" href="#L247">247</a>         CHAR, UCHAR, SHORT, USHORT, INT, UINT, FLOAT, DOUBLE,
+<a class="jxr_linenumber" name="L248" href="#L248">248</a>         X, Y, Z, VERTEX_INDICES, END_HEADER, UNKNOWN;
+<a class="jxr_linenumber" name="L249" href="#L249">249</a>     }
+<a class="jxr_linenumber" name="L250" href="#L250">250</a> 
+<a class="jxr_linenumber" name="L251" href="#L251">251</a>     <em class="jxr_javadoccomment">/** Parsed line fields. */</em>
+<a class="jxr_linenumber" name="L252" href="#L252">252</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">static</strong> <strong class="jxr_keyword">class</strong> <a href="../../../../../../../org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html">Field</a> {
+<a class="jxr_linenumber" name="L253" href="#L253">253</a> 
+<a class="jxr_linenumber" name="L254" href="#L254">254</a>         <em class="jxr_javadoccomment">/** Token. */</em>
+<a class="jxr_linenumber" name="L255" href="#L255">255</a>         <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">final</strong> <a href="../../../../../../../org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html">Token</a> token;
+<a class="jxr_linenumber" name="L256" href="#L256">256</a> 
+<a class="jxr_linenumber" name="L257" href="#L257">257</a>         <em class="jxr_javadoccomment">/** Value. */</em>
+<a class="jxr_linenumber" name="L258" href="#L258">258</a>         <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">final</strong> String value;
+<a class="jxr_linenumber" name="L259" href="#L259">259</a> 
+<a class="jxr_linenumber" name="L260" href="#L260">260</a>         <em class="jxr_javadoccomment">/** Simple constructor.</em>
+<a class="jxr_linenumber" name="L261" href="#L261">261</a> <em class="jxr_javadoccomment">         * @param value field value</em>
+<a class="jxr_linenumber" name="L262" href="#L262">262</a> <em class="jxr_javadoccomment">         */</em>
+<a class="jxr_linenumber" name="L263" href="#L263">263</a>         <strong class="jxr_keyword">public</strong> <a href="../../../../../../../org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html">Field</a>(<strong class="jxr_keyword">final</strong> String value) {
+<a class="jxr_linenumber" name="L264" href="#L264">264</a>             <a href="../../../../../../../org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html">Token</a> parsedToken = <strong class="jxr_keyword">null</strong>;
+<a class="jxr_linenumber" name="L265" href="#L265">265</a>             <strong class="jxr_keyword">try</strong> {
+<a class="jxr_linenumber" name="L266" href="#L266">266</a>                 parsedToken = Token.valueOf(value.toUpperCase());
+<a class="jxr_linenumber" name="L267" href="#L267">267</a>             } <strong class="jxr_keyword">catch</strong> (IllegalArgumentException iae) {
+<a class="jxr_linenumber" name="L268" href="#L268">268</a>                 parsedToken = Token.UNKNOWN;
+<a class="jxr_linenumber" name="L269" href="#L269">269</a>             }
+<a class="jxr_linenumber" name="L270" href="#L270">270</a>             <strong class="jxr_keyword">this</strong>.token = parsedToken;
+<a class="jxr_linenumber" name="L271" href="#L271">271</a>             <strong class="jxr_keyword">this</strong>.value = value;
+<a class="jxr_linenumber" name="L272" href="#L272">272</a>         }
+<a class="jxr_linenumber" name="L273" href="#L273">273</a> 
+<a class="jxr_linenumber" name="L274" href="#L274">274</a>         <em class="jxr_javadoccomment">/** Get the recognized token.</em>
+<a class="jxr_linenumber" name="L275" href="#L275">275</a> <em class="jxr_javadoccomment">         * @return recognized token</em>
+<a class="jxr_linenumber" name="L276" href="#L276">276</a> <em class="jxr_javadoccomment">         */</em>
+<a class="jxr_linenumber" name="L277" href="#L277">277</a>         <strong class="jxr_keyword">public</strong> <a href="../../../../../../../org/apache/commons/math3/geometry/euclidean/threed/PLYParser.html">Token</a> getToken() {
+<a class="jxr_linenumber" name="L278" href="#L278">278</a>             <strong class="jxr_keyword">return</strong> token;
+<a class="jxr_linenumber" name="L279" href="#L279">279</a>         }
+<a class="jxr_linenumber" name="L280" href="#L280">280</a> 
+<a class="jxr_linenumber" name="L281" href="#L281">281</a>         <em class="jxr_javadoccomment">/** Get the field value.</em>
+<a class="jxr_linenumber" name="L282" href="#L282">282</a> <em class="jxr_javadoccomment">         * @return field value</em>
+<a class="jxr_linenumber" name="L283" href="#L283">283</a> <em class="jxr_javadoccomment">         */</em>
+<a class="jxr_linenumber" name="L284" href="#L284">284</a>         <strong class="jxr_keyword">public</strong> String getValue() {
+<a class="jxr_linenumber" name="L285" href="#L285">285</a>             <strong class="jxr_keyword">return</strong> value;
+<a class="jxr_linenumber" name="L286" href="#L286">286</a>         }
+<a class="jxr_linenumber" name="L287" href="#L287">287</a> 
+<a class="jxr_linenumber" name="L288" href="#L288">288</a>     }
+<a class="jxr_linenumber" name="L289" href="#L289">289</a> 
+<a class="jxr_linenumber" name="L290" href="#L290">290</a> }
+</pre>
+<hr/>
+<div id="footer">Copyright &#169; 2003&#x2013;2015 <a href="http://www.apache.org/">The Apache Software Foundation</a>. All rights reserved.</div>
+</body>
+</html>

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