Return-Path: X-Original-To: apmail-commons-issues-archive@minotaur.apache.org Delivered-To: apmail-commons-issues-archive@minotaur.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id E0B2917826 for ; Tue, 7 Oct 2014 11:07:34 +0000 (UTC) Received: (qmail 96716 invoked by uid 500); 7 Oct 2014 11:07:34 -0000 Delivered-To: apmail-commons-issues-archive@commons.apache.org Received: (qmail 96626 invoked by uid 500); 7 Oct 2014 11:07:34 -0000 Mailing-List: contact issues-help@commons.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: issues@commons.apache.org Delivered-To: mailing list issues@commons.apache.org Received: (qmail 96612 invoked by uid 99); 7 Oct 2014 11:07:34 -0000 Received: from arcas.apache.org (HELO arcas.apache.org) (140.211.11.28) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 07 Oct 2014 11:07:34 +0000 Date: Tue, 7 Oct 2014 11:07:33 +0000 (UTC) From: "Gilles (JIRA)" To: issues@commons.apache.org Message-ID: In-Reply-To: References: Subject: [jira] [Commented] (MATH-1154) Statistical tests in stat.inference package are very slow due to implicit RandomGenerator initialization MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 7bit X-JIRA-FingerPrint: 30527f35849b9dde25b450d4833f0394 [ https://issues.apache.org/jira/browse/MATH-1154?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14161764#comment-14161764 ] Gilles commented on MATH-1154: ------------------------------ bq. the patch updates all inference tests to create distributions with a null rng, which avoid additional overhead [...] Doesn't the OP's patch avoid the overhead? It looks like the performance table above provides good ground to accept the change. I'd just suggest to replace class "DefaultRandomGenerator" with a (static) method defined in "RandomGeneratorFactory". > Statistical tests in stat.inference package are very slow due to implicit RandomGenerator initialization > -------------------------------------------------------------------------------------------------------- > > Key: MATH-1154 > URL: https://issues.apache.org/jira/browse/MATH-1154 > Project: Commons Math > Issue Type: Bug > Affects Versions: 3.3 > Reporter: Otmar Ertl > Attachments: MATH-1154.patch, math3.patch > > > Some statistical tests defined in the stat.inference package (e.g. BinomialTest or ChiSquareTest) are unnecessarily very slow (up to a factor 20 slower than necessary). The reason is the implicit slow initialization of a default (Well19937c) random generator instance each time a test is performed. The affected tests create some distribution instance in order to use some methods defined therein. However, they do not use any method for random generation. Nevertheless a random number generator instance is automatically created when creating a distribution instance, which is the reason for the serious slowdown. The problem is related to MATH-1124. > There are following solutions: > 1) Fix the affected statistical tests by passing a light-weight RandomGenerator implementation (or even null) to the constructor of the distribution. > 2) Or use for all distributions a RandomGenerator implementation that uses lazy initialization to generate the Well19937c instance as late as possible. This would also solve MATH-1124. > I will attach a patch proposal together with a performance test, that will demonstrate the speed up after a fix. -- This message was sent by Atlassian JIRA (v6.3.4#6332)