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From "Sujit Pal (JIRA)" <j...@apache.org>
Subject [jira] Updated: (MATH-230) Implement Sparse Matrix Support
Date Sun, 30 Nov 2008 20:21:44 GMT

     [ https://issues.apache.org/jira/browse/MATH-230?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Sujit Pal updated MATH-230:
---------------------------

    Attachment: SparseRealMatrixImplTest.java

SparseRealMatrixImplTest.java

> Implement Sparse Matrix Support
> -------------------------------
>
>                 Key: MATH-230
>                 URL: https://issues.apache.org/jira/browse/MATH-230
>             Project: Commons Math
>          Issue Type: Improvement
>    Affects Versions: 2.0
>         Environment: N/A
>            Reporter: Sujit Pal
>            Priority: Minor
>             Fix For: 2.0
>
>         Attachments: patch.txt, SparseRealMatrixImpl.java, SparseRealMatrixImplTest.java
>
>
> I needed a way to deal with large sparse matrices using commons-math RealMatrix, so I
implemented it. The SparseRealMatrixImpl is a subclass of RealMatrixImpl, and the backing
data structure is a Map<Point,Double>, where Point is a struct like inner-class which
exposes two int parameters row and column. I had to make some changes to the existing components
to keep the code for SparseRealMatrixImpl clean. Here are the details.
> 1) RealMatrix.java:
>    - added a new method setEntry(int, int, double) to set data into a matrix
> 2) RealMatrixImpl.java:
>    - changed all internal calls to data[i][j] to getEntry(i,j).
>    - for some methods such as add(), subtract(), premultiply(), etc, there
>      was code that checked for ClassCastException and had two versions,
>      one for a generic RealMatrix and one for a RealMatrixImpl. This has
>      been changed to have only one that operates on a RealMatrix. The 
>      result is something like auto-type casting. So if:
>        RealMatrixImpl.add(RealMatrix) returns a RealMatrixImpl
>        SparseRealMatrixImpl.add(RealMatrix) returns a SparseRealMatrixImpl
> 3) SparseRealMatrixImpl added as a subclass of RealMatrixImpl.
> 4) LUDecompositionImpl changed to use a clone of the passed in RealMatrix
>    instead of its data[][] block, and now it uses clone.getEntry(row,col)
>    calls instead of data[row][col] calls.
> 5) LUDecompositionImpl returned RealMatrixImpl for getL(), getU(), getP()
>    and solve(). It now returns the same RealMatrix impl that is passed 
>    in through its constructor for these methods.
> 6) New test for SparseRealMatrixImpl, mimics the tests in RealMatrixImplTest,
> 7) New static method to create SparseRealMatrixImpl out of a double[][] in
>    MatrixUtils.createSparseRealMatrix().
>    but using SparseRealMatrixImpl.
> 8) Verified that all JUnit tests pass.

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