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From Benedikt Ritter <benerit...@gmail.com>
Subject Re: svn commit: r1494684 - in /commons/sandbox/commons-javadocfix-plugin/trunk: ./ src/ src/main/ src/main/java/ src/main/java/org/ src/main/java/org/apache/ src/main/java/org/apache/commons/ src/main/java/org/apache/commons/plugins/ src/main/java/org/apac...
Date Wed, 19 Jun 2013 19:34:59 GMT
Hi Sebb,

Am 19.06.2013 um 18:33 schrieb sebb@apache.org:

> Author: sebb
> Date: Wed Jun 19 16:33:04 2013
> New Revision: 1494684
> 
> URL: http://svn.apache.org/r1494684
> Log:
> Initial checkin.
> Oracle files as per the download; only some file names changed to clarify the origin
> 
> Added:
>    commons/sandbox/commons-javadocfix-plugin/trunk/LICENSE-JavadocFixTool
>    commons/sandbox/commons-javadocfix-plugin/trunk/LICENSE.txt   (with props)
>    commons/sandbox/commons-javadocfix-plugin/trunk/NOTICE.txt   (with props)
>    commons/sandbox/commons-javadocfix-plugin/trunk/README-JavadocFixTool   (with props)
>    commons/sandbox/commons-javadocfix-plugin/trunk/pom.xml   (with props)
>    commons/sandbox/commons-javadocfix-plugin/trunk/src/
>    commons/sandbox/commons-javadocfix-plugin/trunk/src/main/
>    commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/
>    commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/JavadocFixTool.java   (with props)
>    commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/
>    commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/
>    commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/
>    commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/
>    commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/
>    commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/AbstractJavadocFixToolMojo.java   (with props)
>    commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/CheckMojo.java   (with props)
>    commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/FixMojo.java   (with props)
> Modified:
>    commons/sandbox/commons-javadocfix-plugin/trunk/   (props changed)
> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/
> ------------------------------------------------------------------------------
> --- svn:ignore (added)
> +++ svn:ignore Wed Jun 19 16:33:04 2013
> @@ -0,0 +1 @@
> +target
> 
> Added: commons/sandbox/commons-javadocfix-plugin/trunk/LICENSE-JavadocFixTool
> URL: http://svn.apache.org/viewvc/commons/sandbox/commons-javadocfix-plugin/trunk/LICENSE-JavadocFixTool?rev=1494684&view=auto
> ==============================================================================
> --- commons/sandbox/commons-javadocfix-plugin/trunk/LICENSE-JavadocFixTool (added)
> +++ commons/sandbox/commons-javadocfix-plugin/trunk/LICENSE-JavadocFixTool Wed Jun 19 16:33:04 2013
> @@ -0,0 +1,80 @@
> + License Agreement 

Can this BOM be dropped or did it come from the original file and has to stay?

Benedikt

> + 
> + PLEASE READ THE FOLLOWING LICENSE TERMS CAREFULLY BEFORE USING THE 
> + ACCOMPANYING PROGRAM. THESE TERMS CONSTITUTE A LEGAL AGREEMENT BETWEEN 
> + YOU AND US.
> + 
> + "Oracle" refers to Oracle America, Inc., for and on behalf of itself and its 
> + subsidiaries and affiliates under common control.  "We," "us," and "our" 
> + refers to Oracle and any Program contributors. "You" and "your" refers to 
> + the individual or entity that wishes to use the Program. "Program" refers to
> + the Java API Documentation Updater Tool, Copyright (c) 2013, Oracle America,
> + Inc., and updates or error corrections provided by Oracle or contributors.
> + 
> + WARNING: 
> + The Program will analyze directory information on your computer 
> + system and may modify software components on such computer system.  You 
> + should only use the Program on computer systems that you maintain sufficient
> + rights to update software components.
> + 
> + If your computer system is owned by a person or entity other than you, 
> + you should check with such person or entity before using the Program. 
> + 
> + It is possible that you may lose some software functionality, and make 
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> + License Rights and Obligations 
> + We grant you a perpetual, nonexclusive, limited license to use, modify and 
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> + purpose of analyzing the directory structure of your computer system and
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> + either or both binary or source form, including as modified by you, you
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> + Entire Agreement
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> + in, the courts of San Francisco or Santa Clara counties in California in
> + any dispute between you and Oracle arising out of or relating to this
> + Agreement. 
> + 
> + Last updated: 14 June 2013
> 
> Added: commons/sandbox/commons-javadocfix-plugin/trunk/LICENSE.txt
> URL: http://svn.apache.org/viewvc/commons/sandbox/commons-javadocfix-plugin/trunk/LICENSE.txt?rev=1494684&view=auto
> ==============================================================================
> --- commons/sandbox/commons-javadocfix-plugin/trunk/LICENSE.txt (added)
> +++ commons/sandbox/commons-javadocfix-plugin/trunk/LICENSE.txt Wed Jun 19 16:33:04 2013
> @@ -0,0 +1,202 @@
> +
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> +      any Contribution intentionally submitted for inclusion in the Work
> +      by You to the Licensor shall be under the terms and conditions of
> +      this License, without any additional terms or conditions.
> +      Notwithstanding the above, nothing herein shall supersede or modify
> +      the terms of any separate license agreement you may have executed
> +      with Licensor regarding such Contributions.
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> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/LICENSE.txt
> ------------------------------------------------------------------------------
>    svn:eol-style = native
> 
> Added: commons/sandbox/commons-javadocfix-plugin/trunk/NOTICE.txt
> URL: http://svn.apache.org/viewvc/commons/sandbox/commons-javadocfix-plugin/trunk/NOTICE.txt?rev=1494684&view=auto
> ==============================================================================
> --- commons/sandbox/commons-javadocfix-plugin/trunk/NOTICE.txt (added)
> +++ commons/sandbox/commons-javadocfix-plugin/trunk/NOTICE.txt Wed Jun 19 16:33:04 2013
> @@ -0,0 +1,8 @@
> +Apache Commons JavadocFix Plugin
> +Copyright 2013 The Apache Software Foundation
> +
> +This product includes software developed at
> +The Apache Software Foundation (http://www.apache.org/).
> +
> +This product contains software (JavadocFixTool) originally developed by Oracle America, Inc.
> +The license is found in the file LICENSE-JavadocFixTool
> \ No newline at end of file
> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/NOTICE.txt
> ------------------------------------------------------------------------------
>    svn:eol-style = native
> 
> Added: commons/sandbox/commons-javadocfix-plugin/trunk/README-JavadocFixTool
> URL: http://svn.apache.org/viewvc/commons/sandbox/commons-javadocfix-plugin/trunk/README-JavadocFixTool?rev=1494684&view=auto
> ==============================================================================
> --- commons/sandbox/commons-javadocfix-plugin/trunk/README-JavadocFixTool (added)
> +++ commons/sandbox/commons-javadocfix-plugin/trunk/README-JavadocFixTool Wed Jun 19 16:33:04 2013
> @@ -0,0 +1,43 @@
> +Description:
> +------------
> +
> +To address the security alert CVE-2013-1571, this tool is intended to repair-in-place, 
> +the HTML files generated by the javadoc tool versions 5u45, 6u45, 7u21 and earlier. 
> +
> +System requirements:
> +--------------------
> +
> +This tool can be run on Windows, Solaris, Linux and Mac OS X operating systems 
> +for which an official Oracle JRE version is available. Oracle JRE v. 1.7 or greater 
> +is required.
> +
> +To scan the javadoc tree for applicable files, the user must have read access to the  
> +directory it resides in and to all its sub directories. 
> +
> +To fix the  applicable files, the user running the tool must have read and write 
> +permissions to the files as well as to the directories that contain these files.
> +
> +Usage:
> +------
> +
> +To run the tool, the user must know the location of the java executable 
> +and the location of the directory where the javadoc tree resides.
> +
> +To scan for potential vulnerabilities, run the following command from the 
> +directory in which the JavadocPatchTool.jar file is located:
> +
> +java -jar JavadocPatchTool.jar -R -C <Path_to_Javadoc>
> +
> +where <Path_to_Javadoc> is the path to the directory where the potentially 
> +vulnerable javadoc tree resides. If the tool finds any applicable HTML files, 
> +it will print out a list of such files.
> +
> +To fix a single applicable file, run the following command:
> +
> +java -jar JavadocPatchTool.jar <Path_to_folder>
> +
> +where <Path_to_folder> is the path to the directory which contains the applicable file. 
> +
> +To fix all the applicable files in the tree, run the following command:
> +
> +java -jar JavadocPatchTool.jar -R <Path_to_Javadoc>
> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/README-JavadocFixTool
> ------------------------------------------------------------------------------
>    svn:eol-style = native
> 
> Added: commons/sandbox/commons-javadocfix-plugin/trunk/pom.xml
> URL: http://svn.apache.org/viewvc/commons/sandbox/commons-javadocfix-plugin/trunk/pom.xml?rev=1494684&view=auto
> ==============================================================================
> --- commons/sandbox/commons-javadocfix-plugin/trunk/pom.xml (added)
> +++ commons/sandbox/commons-javadocfix-plugin/trunk/pom.xml Wed Jun 19 16:33:04 2013
> @@ -0,0 +1,156 @@
> +<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
> +  xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
> +  <modelVersion>4.0.0</modelVersion>
> +
> +  <parent>
> +      <groupId>org.apache.commons</groupId>
> +      <artifactId>commons-parent</artifactId>
> +      <version>30</version>
> +  </parent>
> + 
> +  <groupId>org.apache.commons</groupId>
> +  <artifactId>commons-javadocfix-plugin</artifactId>
> +  <packaging>maven-plugin</packaging>
> +  <version>1.0-SNAPSHOT</version>
> +  <name>Apache commons-javadocfix-plugin Maven Mojo</name>
> +  <inceptionYear>2013</inceptionYear>
> +  <url>http://commons.apache.org/proper/commons-javadocfix-plugin/</url>
> +
> +  <description>
> +Apache Maven GPG plugin which allows arbitrary files to be signed.
> +This is intended as a temporary measure until MGPG-43 is implemented. 
> +  </description>
> +
> +  <issueManagement>
> +    <system>jira</system>
> +    <url>http://issues.apache.org/jira/browse/COMMONSSITE</url>
> +  </issueManagement>
> +
> +  <scm>
> +      <connection>scm:svn:http://svn.apache.org/repos/asf/commons/proper/commons-javadocfix-plugin/trunk/</connection>
> +      <developerConnection>scm:svn:https://svn.apache.org/repos/asf/commons/proper/commons-javadocfix-plugin/trunk/</developerConnection>
> +      <url>http://svn.apache.org/viewvc/commons/proper/commons-javadocfix-plugin/trunk/</url>
> +  </scm>
> +
> +  <prerequisites>
> +    <maven>${mavenVersion}</maven>
> +  </prerequisites>
> +
> +   <properties>
> +    <mavenVersion>2.2.1</mavenVersion>
> +    <mavenPluginPluginVersion>3.2</mavenPluginPluginVersion>
> +    <maven.compiler.source>1.5</maven.compiler.source>
> +    <maven.compiler.target>1.5</maven.compiler.target>
> +    <!-- Avoid problems with jar & osgi builds in CP -->
> +    <commons.manifestfile />
> +    <!-- Temporary fix until CP31 is released -->
> +    <maven.compile.source>${maven.compiler.source}</maven.compile.source>
> +    <maven.compile.target>${maven.compiler.target}</maven.compile.target>
> +  </properties>
> +
> +  <dependencies>
> +  <!-- 
> +    <dependency>
> +      <groupId>org.apache.maven</groupId>
> +      <artifactId>maven-core</artifactId>
> +      <version>${mavenVersion}</version>
> +    </dependency>
> +     -->
> +    <dependency>
> +      <groupId>org.apache.maven</groupId>
> +      <artifactId>maven-plugin-api</artifactId>
> +      <version>${mavenVersion}</version>
> +    </dependency>
> +    <dependency>
> +      <groupId>org.apache.maven</groupId>
> +      <artifactId>maven-project</artifactId>
> +      <version>${mavenVersion}</version>
> +      <exclusions>
> +        <exclusion>
> +          <groupId>org.codehaus.plexus</groupId>
> +          <artifactId>plexus-container-default</artifactId>
> +        </exclusion>
> +      </exclusions>
> +    </dependency>
> +    <dependency>
> +      <groupId>org.apache.maven</groupId>
> +      <artifactId>maven-artifact</artifactId>
> +      <version>${mavenVersion}</version>
> +    </dependency>
> +    <dependency>
> +      <groupId>org.apache.maven</groupId>
> +      <artifactId>maven-model</artifactId>
> +      <version>${mavenVersion}</version>
> +    </dependency>
> +    <dependency>
> +      <groupId>org.apache.maven.plugin-tools</groupId>
> +      <artifactId>maven-plugin-annotations</artifactId>
> +      <version>${mavenPluginPluginVersion}</version>
> +      <scope>provided</scope>
> +    </dependency>
> +    <dependency>
> +      <groupId>org.codehaus.plexus</groupId>
> +      <artifactId>plexus-utils</artifactId>
> +      <version>3.0.7</version>
> +    </dependency>
> +  </dependencies>
> +
> +  <build>
> +
> +    <pluginManagement>
> +      <plugins>
> +        <plugin>
> +          <groupId>${project.groupId}</groupId>
> +          <artifactId>${project.artifactId}</artifactId>
> +          <version>${project.version}</version>
> +        </plugin>
> +<!-- 
> +        <plugin>
> +          <artifactId>maven-assembly-plugin</artifactId>
> +          <configuration>
> +            <descriptors>
> +              <descriptor>src/assembly/src.xml</descriptor>
> +            </descriptors>
> +            <tarLongFileMode>gnu</tarLongFileMode>
> +          </configuration>
> +        </plugin>
> +-->
> +         <plugin>
> +          <artifactId>maven-plugin-plugin</artifactId>
> +          <version>${mavenPluginPluginVersion}</version>
> +          <configuration>
> +            <skipErrorNoDescriptorsFound>true</skipErrorNoDescriptorsFound>
> +          </configuration>
> +        </plugin>
> +      </plugins>
> +    </pluginManagement>
> +
> +    <plugins>
> +        <plugin>
> +          <groupId>${project.groupId}</groupId>
> +          <artifactId>${project.artifactId}</artifactId>
> +        </plugin>
> +      <plugin>
> +        <groupId>org.apache.maven.plugins</groupId>
> +        <artifactId>maven-plugin-plugin</artifactId>
> +        <configuration>
> +          <skipErrorNoDescriptorsFound>true</skipErrorNoDescriptorsFound>
> +        </configuration>
> +        <executions>
> +          <execution>
> +            <id>generate-descriptor</id>
> +            <goals>
> +              <goal>descriptor</goal>
> +            </goals>
> +          </execution>
> +          <execution>
> +            <id>generated-helpmojo</id>
> +            <goals>
> +              <goal>helpmojo</goal>
> +            </goals>
> +          </execution>
> +        </executions>
> +      </plugin>
> +    </plugins>
> +  </build>
> +</project>
> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/pom.xml
> ------------------------------------------------------------------------------
>    svn:eol-style = native
> 
> Added: commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/JavadocFixTool.java
> URL: http://svn.apache.org/viewvc/commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/JavadocFixTool.java?rev=1494684&view=auto
> ==============================================================================
> --- commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/JavadocFixTool.java (added)
> +++ commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/JavadocFixTool.java Wed Jun 19 16:33:04 2013
> @@ -0,0 +1,350 @@
> +/*
> + * Copyright (c) 2013 Oracle and/or its affiliates.
> + * All rights reserved. Use is subject to license terms.
> + *
> + * License Agreement
> + * 
> + * PLEASE READ THE FOLLOWING LICENSE TERMS CAREFULLY BEFORE USING THE 
> + * ACCOMPANYING PROGRAM. THESE TERMS CONSTITUTE A LEGAL AGREEMENT BETWEEN 
> + * YOU AND US.
> + * 
> + * "Oracle" refers to Oracle America, Inc., for and on behalf of itself and its 
> + * subsidiaries and affiliates under common control.  "We," "us," and "our" 
> + * refers to Oracle and any Program contributors. "You" and "your" refers to 
> + * the individual or entity that wishes to use the Program. "Program" refers to
> + * the Java API Documentation Updater Tool, Copyright (c) 2013, Oracle America,
> + * Inc., and updates or error corrections provided by Oracle or contributors.
> + * 
> + * WARNING: 
> + * The Program will analyze directory information on your computer 
> + * system and may modify software components on such computer system.  You 
> + * should only use the Program on computer systems that you maintain sufficient
> + * rights to update software components.
> + * 
> + * If your computer system is owned by a person or entity other than you, 
> + * you should check with such person or entity before using the Program. 
> + * 
> + * It is possible that you may lose some software functionality, and make 
> + * Java API Documentation pages unusable on your computer system after you use
> + * the Program to update software components.
> + * 
> + * License Rights and Obligations 
> + * We grant you a perpetual, nonexclusive, limited license to use, modify and 
> + * distribute the Program in binary and/or source code form, only for the
> + * purpose of analyzing the directory structure of your computer system and
> + * updating Java API Documentation files.  If you distribute the Program, in
> + * either or both binary or source form, including as modified by you, you
> + * shall include this License Agreement ("Agreement") with your distribution.
> + * 
> + * All rights not expressly granted above are hereby reserved. If you want to
> + * use the Program for any purpose other than as permitted under this
> + * Agreement, you must obtain a valid license permitting such use from Oracle.
> + * Neither the name of Oracle nor the names of any Program contributors may be
> + * used to endorse or promote products derived from this software without
> + * specific prior written permission.
> + * 
> + * Ownership and Restrictions 
> + * We retain all ownership and intellectual property rights in the Program as
> + * provided by us. You retain all ownership and intellectual property rights
> + * in your modifications.
> + * 
> + * Export
> + * You agree to comply fully with export laws and regulations of the United 
> + * States and any other applicable export laws ("Export Laws") to assure that
> + * neither the Program nor any direct products thereof are:  (1) exported,
> + * directly or indirectly, in violation of this Agreement or Export Laws; or
> + * (2) used for any purposes prohibited by the Export Laws, including, without
> + * limitation, nuclear, chemical, or biological weapons proliferation, or
> + * development of missile technology. 
> + * 
> + * Disclaimer of Warranty and Limitation of Liability 
> + * THE PROGRAM IS PROVIDED "AS IS" WITHOUT WARRANTY OF ANY KIND. USE AT YOUR
> + * OWN RISK.  WE FURTHER DISCLAIM ALL WARRANTIES, EXPRESS AND IMPLIED,
> + * INCLUDING WITHOUT LIMITATION, ANY IMPLIED WARRANTIES OF MERCHANTABILITY,
> + * FITNESS FOR A PARTICULAR PURPOSE OR NONINFRINGEMENT. 
> + * 
> + * IN NO EVENT SHALL WE BE LIABLE FOR ANY INDIRECT, DIRECT, INCIDENTAL,
> + * SPECIAL, PUNITIVE OR CONSEQUENTIAL DAMAGES, OR DAMAGES FOR LOSS OF PROFITS,
> + * REVENUE, DATA OR DATA USE, INCURRED BY YOU OR ANY THIRD PARTY, WHETHER IN AN
> + * ACTION IN CONTRACT OR TORT, EVEN IF WE HAVE BEEN ADVISED OF THE POSSIBILITY
> + * OF SUCH DAMAGES.  ORACLE SHALL HAVE NO LIABILITY FOR MODIFICATIONS MADE BY
> + * YOU OR ANY THIRD PARTY.
> + * 
> + * Entire Agreement
> + * You agree that this Agreement is the complete agreement for the Program, and
> + * this Agreement supersedes all prior or contemporaneous agreements or
> + * representations. If any term of this Agreement is found to be invalid or
> + * unenforceable, the remaining provisions will remain effective. This
> + * Agreement is governed by the substantive and procedural laws of California.
> + * You and Oracle agree to submit to the exclusive jurisdiction of, and venue
> + * in, the courts of San Francisco or Santa Clara counties in California in
> + * any dispute between you and Oracle arising out of or relating to this
> + * Agreement. 
> + * 
> + * Last updated: 14 June 2013
> + */
> +import java.io.*;
> +
> +/*
> + * Tool for finding and addressing files related to CVE-2013-1571.
> + * See README file for details.
> + */
> +public class JavadocFixTool {
> +    // Usual suspects
> +    private final static String[] fileNames = {"index.html",
> +                                         "index.htm",
> +                                         "toc.html",
> +                                         "toc.htm"};
> +
> +    // If we locate this function but not validURL - we are in trouble
> +    private final String patchString = "function loadFrames() {";
> +    // Main fix - should be inserted before the loadFrames() function alongside
> +    // the code that calls this function
> +    private final static String[] patchData =
> +            {"    if (targetPage != \"\" && !validURL(targetPage))",
> +             "        targetPage = \"undefined\";",
> +             "    function validURL(url) {",
> +             "        var pos = url.indexOf(\".html\");",
> +             "        if (pos == -1 || pos != url.length - 5)",
> +             "            return false;",
> +             "        var allowNumber = false;",
> +             "        var allowSep = false;",
> +             "        var seenDot = false;",
> +             "        for (var i = 0; i < url.length - 5; i++) {",
> +             "            var ch = url.charAt(i);",
> +             "            if ('a' <= ch && ch <= 'z' ||",
> +             "                    'A' <= ch && ch <= 'Z' ||",
> +             "                    ch == '$' ||",
> +             "                    ch == '_') {",
> +             "                allowNumber = true;",
> +             "                allowSep = true;",
> +             "            } else if ('0' <= ch && ch <= '9'",
> +             "                    || ch == '-') {",
> +             "                if (!allowNumber)",
> +             "                     return false;",
> +             "            } else if (ch == '/' || ch == '.') {",
> +             "                if (!allowSep)",
> +             "                    return false;",
> +             "                allowNumber = false;",
> +             "                allowSep = false;",
> +             "                if (ch == '.')",
> +             "                     seenDot = true;",
> +             "                if (ch == '/' && seenDot)",
> +             "                     return false;",
> +             "            } else {",
> +             "                return false;",
> +             "            }",
> +             "        }",
> +             "        return true;",
> +             "    }",
> +             "    function loadFrames() {"};
> +
> +    private final String quickFixString = "if (!(url.indexOf(\".html\") == url.length - 5))";
> +    private final String[] quickFix = {"        var pos = url.indexOf(\".html\");",
> +                                       "        if (pos == -1 || pos != url.length - 5)"};
> +    private static String readme = null;
> +    private static String version = "Java Documentation Updater Tool version 1.2 06/14/2013\n";
> +
> +    private static boolean doPatch = true; // By default patch file
> +    private static boolean recursive = false; // By default only look in the folder in parameter
> +
> +    public static void main(String[] args) {
> +        System.out.println(version);
> +
> +        if (args.length < 1) {
> +            // No arguments - lazily initialize readme, print readme and usage
> +            initReadme();
> +            if (readme != null) {
> +                System.out.println(readme);
> +            }
> +            printUsage(System.out);
> +            return;
> +        }
> +
> +        // Last argument should be a path to the document root
> +        String name = args[args.length-1];
> +
> +        // Analyze the rest of parameters
> +        for (int i = 0 ; i < args.length -1; i++) {
> +            if ("-R".equalsIgnoreCase(args[i])) {
> +                recursive = true;
> +            } else if ("-C".equalsIgnoreCase(args[i])) {
> +                doPatch = false;
> +            } else {
> +                System.err.println("Unknown option passed: "+args[i]);
> +                printUsage(System.err);
> +                return;
> +            }
> +        }
> +        new JavadocFixTool().proceed(name);
> +    }
> +
> +    /*
> +     * Print usage information into the provided PrintStream
> +     * @param out PrintStream to write usage information
> +     */
> +    public static void printUsage(PrintStream out) {
> +        out.println("Usage: java -jar JavadocPatchTool.jar [-R] [-C] <Path to Javadoc root>");
> +        out.println("    -R : Proceed recursively starting from given folder");
> +        out.println("    -C : Check only - program will find vulnerable files and print their full paths");
> +    }
> +
> +    /*
> +     * Lazily initialize the readme document, reading it from README file inside the jar
> +     */
> +    public static void initReadme() {
> +        try {
> +            InputStream readmeStream = JavadocFixTool.class.getResourceAsStream("/README");
> +            if (readmeStream != null) {
> +                BufferedReader readmeReader = new BufferedReader(new InputStreamReader(readmeStream));
> +                StringBuilder readmeBuilder = new StringBuilder();
> +                String s;
> +                while ((s = readmeReader.readLine()) != null) {
> +                    readmeBuilder.append(s);
> +                    readmeBuilder.append("\n");
> +                }
> +                readme = readmeBuilder.toString();
> +            }
> +        } catch (IOException ignore) {} // Ignore exception - readme not initialized
> +    }
> +
> +    /*
> +     * Main procedure - proceed with the searching and/or fixing depending on
> +     * the command line parameters
> +     * @param name Path to the document root
> +     */
> +    public void proceed(String name) {
> +        try {
> +            File folder = new File(name);
> +            if (folder.exists() && folder.isDirectory() && folder.canRead()) {
> +                searchAndPatch(folder);
> +            } else {
> +                System.err.println("Invalid folder in parameter \""+name+"\"");
> +                printUsage(System.err);
> +            }
> +        } catch (Exception ignored) {} // Die silently
> +    }
> +
> +    /*
> +     * Find all the files that match the list given in the fileNames array.
> +     * If file found attempt to patch it.
> +     * If global parameter recursive is set to true attempt to go into the enclosed subfolders
> +     * otherwise only patch said files in the folder directly pointed in parameter.
> +     */
> +    public void searchAndPatch(File folder) {
> +        if (folder == null || !folder.isDirectory() || folder.list() == null) {
> +            // Silently return
> +            return;
> +        }
> +
> +        for (File file : folder.listFiles()) {
> +            if (file.isDirectory()) {
> +                if(recursive) {
> +                    searchAndPatch(file);
> +                }
> +                continue;
> +            }
> +            String name = file.getName();
> +            for (String s : fileNames) {
> +                if (s.equalsIgnoreCase(name)) {
> +                    try {
> +                        applyPatch(file, folder);
> +                    } catch (Exception ex) {
> +                        String filePath;
> +                        try {
> +                            filePath = file.getCanonicalPath();
> +                        } catch (IOException ioe) {
> +                            System.err.println("Can not resolve path to "+file.getName()+" in folder "+folder.getName());
> +                            continue;
> +                        }
> +                        System.err.println("Patch failed on: "+filePath+" due to the "+ex);
> +                    }
> +                }
> +            }
> +        }
> +    }
> +
> +    /*
> +     * Try to apply patch to the single file in the specific folder
> +     * If global parameter doPatch is false we should only print the location of the vulnerable html file
> +     * and return
> +     */
> +    public void applyPatch(File file, File currentFolder) throws Exception {
> +        FileInputStream fis = new FileInputStream(file);
> +        BufferedReader br = new BufferedReader(new InputStreamReader(fis));
> +        String line;
> +        String failedString = patchString;
> +        String[] patch = patchData;
> +        // Attempt to look if file is vulnerable
> +        for (int i = 0 ; i < 80 ; i++) { // Check first 80 lines - if there is no signature it is not our file
> +            line = br.readLine();
> +            if (line == null) {
> +                // File less than 80 lines long, no signature encountered
> +                return;
> +            }
> +            if (line.trim().equals("function validURL(url) {")) { // Already patched
> +                failedString = null;
> +                patch = null;
> +                continue;
> +            }
> +            if (line.trim().equals(quickFixString)) { // The patch had famous 2-letter bug, update it
> +                failedString = quickFixString;
> +                patch = quickFix;
> +                continue;
> +            }
> +            if (line.trim().equals("function loadFrames() {")) {
> +                fis.close(); // It should not interfere with the file renaming process
> +                if (failedString != null) {
> +                    // Vulnerable file
> +                    if (!doPatch) { // Report and return
> +                        System.out.println("Vulnerable file found: "+file.getCanonicalPath());
> +                    } else {
> +                        replaceStringInFile(currentFolder, file, failedString, patch);
> +                    }
> +                }
> +                return;
> +            }
> +        }
> +    }
> +
> +    /*
> +     * Replace one line in the given file in the given folder with the lines given
> +     * @param folder Folder in which file should be created
> +     * @param file Original file to patch
> +     * @param template Trimmed String with the pattern we are have to find
> +     * @param replacement Array of String that has to be written in the place of first line matching the template
> +     */
> +    public void replaceStringInFile(File folder, File file, String template, String[] replacement)
> +            throws IOException {
> +        System.out.println("Patching file: "+file.getCanonicalPath());
> +        String name = file.getName();
> +        File origFile = new File(folder, name+".orig");
> +        file.renameTo(origFile);
> +        File temporaryFile = new File(folder, name+".tmp");
> +        if (temporaryFile.exists()) {
> +            temporaryFile.delete();
> +        }
> +        temporaryFile.createNewFile();
> +        String line;
> +        FileInputStream fis = new FileInputStream(origFile);
> +        PrintWriter pw = new PrintWriter(temporaryFile);
> +        BufferedReader br = new BufferedReader(new InputStreamReader(fis));
> +        while ((line = br.readLine()) != null) {
> +            if (line.trim().equals(template)) {
> +                for (String s : replacement) {
> +                    pw.println(s);
> +                }
> +            } else {
> +                pw.println(line);
> +            }
> +        }
> +        pw.flush();
> +        pw.close();
> +        if (!temporaryFile.renameTo(new File(folder, name))) {
> +            throw new IOException("Unable to rename file in folder "+folder.getName()+
> +                    " from \""+temporaryFile.getName()+"\" into \""+name +
> +                    "\n Original file saved as "+origFile.getName());
> +        }
> +        origFile.delete();
> +    }
> +}
> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/JavadocFixTool.java
> ------------------------------------------------------------------------------
>    svn:eol-style = native
> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/JavadocFixTool.java
> ------------------------------------------------------------------------------
>    svn:keywords = Author Date Id Revision
> 
> Added: commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/AbstractJavadocFixToolMojo.java
> URL: http://svn.apache.org/viewvc/commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/AbstractJavadocFixToolMojo.java?rev=1494684&view=auto
> ==============================================================================
> --- commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/AbstractJavadocFixToolMojo.java (added)
> +++ commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/AbstractJavadocFixToolMojo.java Wed Jun 19 16:33:04 2013
> @@ -0,0 +1,96 @@
> +/*
> + * Licensed to the Apache Software Foundation (ASF) under one or more
> + * contributor license agreements.  See the NOTICE file distributed with
> + * this work for additional information regarding copyright ownership.
> + * The ASF licenses this file to You under the Apache License, Version 2.0
> + * (the "License"); you may not use this file except in compliance with
> + * the License.  You may obtain a copy of the License at
> + *
> + *   http://www.apache.org/licenses/LICENSE-2.0
> + *
> + * Unless required by applicable law or agreed to in writing, software
> + * distributed under the License is distributed on an "AS IS" BASIS,
> + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
> + * See the License for the specific language governing permissions and
> + * limitations under the License.
> + * 
> + */
> +
> +package org.apache.commons.plugins.javadocfix;
> +
> +import java.io.File;
> +import java.util.Set;
> +
> +import org.apache.maven.plugin.AbstractMojo;
> +import org.apache.maven.plugin.MojoExecutionException;
> +import org.apache.maven.plugin.MojoFailureException;
> +import org.apache.maven.plugin.logging.Log;
> +import org.apache.maven.plugins.annotations.Component;
> +import org.apache.maven.plugins.annotations.Parameter;
> +import org.apache.maven.project.MavenProject;
> +
> +/**
> + * Runs the JavadocFixTool on the specified directories
> + */
> +public abstract class AbstractJavadocFixToolMojo extends AbstractMojo {
> +
> +    /**
> +     * The default list of directories to scan.
> +     */
> +    private static final String DEFAULT_API_DIRS [] = {"target/site/apidocs", "target/site/testapidocs"}; 
> +
> +    /**
> +     * List of directories to include, default none.
> +     * These are relative to the project base directory.
> +     * If not specified, the default is
> +     * {"target/site/apidocs", "target/site/testapidocs"}
> +     */
> +    @Parameter
> +    private Set<String> includes;
> +
> +    /**
> +     * List of directories to include, comma-separated (intended for command-line usage).
> +     * Overrides includes and excludes; uses same syntax as for {@code <include>}
> +     */
> +    @Parameter (property="javadocfixfiles.directories")
> +    private String directories;
> +
> +    /*
> +     * The maven project.
> +     */
> +    @Component
> +    private MavenProject project;
> +
> +    /**
> +     * @throws MojoExecutionException  
> +     * @throws MojoFailureException 
> +     */
> +    public void execute(boolean fix) throws MojoExecutionException, MojoFailureException {
> +        final Log log = getLog();
> +        String dirs[];
> +        if (directories != null) {
> +            log.info("Will process Javadoc files in: " + directories);
> +            dirs = directories.split(",");
> +        } else {
> +            if ( includes == null || includes.isEmpty() ) {
> +                dirs = DEFAULT_API_DIRS;
> +            } else {
> +                dirs = includes.toArray( new String[includes.size()] );
> +            }
> +        }
> +        for(String dir : dirs ){
> +            File d = new File(project.getBasedir(), dir);
> +            if (d.isDirectory()) {
> +                if (fix) {
> +                    log.info("Fixing " + d);
> +//                    JavadocFixTool.main(new String[]{"-R", d.toString()});
> +                } else {
> +                    log.info("Scanning " + d);                        
> +//                    JavadocFixTool.main(new String[]{"-R", "-C", d.toString()});
> +                }
> +            } else {
> +                log.warn(d+" is not a directory");
> +            }
> +        }
> +    }
> +}
> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/AbstractJavadocFixToolMojo.java
> ------------------------------------------------------------------------------
>    svn:eol-style = native
> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/AbstractJavadocFixToolMojo.java
> ------------------------------------------------------------------------------
>    svn:keywords = Author Date Id Revision
> 
> Added: commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/CheckMojo.java
> URL: http://svn.apache.org/viewvc/commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/CheckMojo.java?rev=1494684&view=auto
> ==============================================================================
> --- commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/CheckMojo.java (added)
> +++ commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/CheckMojo.java Wed Jun 19 16:33:04 2013
> @@ -0,0 +1,35 @@
> +/*
> + * Licensed to the Apache Software Foundation (ASF) under one or more
> + * contributor license agreements.  See the NOTICE file distributed with
> + * this work for additional information regarding copyright ownership.
> + * The ASF licenses this file to You under the Apache License, Version 2.0
> + * (the "License"); you may not use this file except in compliance with
> + * the License.  You may obtain a copy of the License at
> + *
> + *   http://www.apache.org/licenses/LICENSE-2.0
> + *
> + * Unless required by applicable law or agreed to in writing, software
> + * distributed under the License is distributed on an "AS IS" BASIS,
> + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
> + * See the License for the specific language governing permissions and
> + * limitations under the License.
> + * 
> + */
> +
> +package org.apache.commons.plugins.javadocfix;
> +
> +import org.apache.maven.plugin.MojoExecutionException;
> +import org.apache.maven.plugin.MojoFailureException;
> +import org.apache.maven.plugins.annotations.Mojo;
> +
> +/**
> + * Runs the JavadocFixTool on the specified directories in check mode (-C)
> + */
> +@Mojo (name = "check")
> +public class CheckMojo extends AbstractJavadocFixToolMojo {
> +
> +    public void execute() throws MojoExecutionException, MojoFailureException {
> +        execute(false);        
> +    }
> +
> +}
> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/CheckMojo.java
> ------------------------------------------------------------------------------
>    svn:eol-style = native
> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/CheckMojo.java
> ------------------------------------------------------------------------------
>    svn:keywords = Author Date Id Revision
> 
> Added: commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/FixMojo.java
> URL: http://svn.apache.org/viewvc/commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/FixMojo.java?rev=1494684&view=auto
> ==============================================================================
> --- commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/FixMojo.java (added)
> +++ commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/FixMojo.java Wed Jun 19 16:33:04 2013
> @@ -0,0 +1,35 @@
> +/*
> + * Licensed to the Apache Software Foundation (ASF) under one or more
> + * contributor license agreements.  See the NOTICE file distributed with
> + * this work for additional information regarding copyright ownership.
> + * The ASF licenses this file to You under the Apache License, Version 2.0
> + * (the "License"); you may not use this file except in compliance with
> + * the License.  You may obtain a copy of the License at
> + *
> + *   http://www.apache.org/licenses/LICENSE-2.0
> + *
> + * Unless required by applicable law or agreed to in writing, software
> + * distributed under the License is distributed on an "AS IS" BASIS,
> + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
> + * See the License for the specific language governing permissions and
> + * limitations under the License.
> + * 
> + */
> +
> +package org.apache.commons.plugins.javadocfix;
> +
> +import org.apache.maven.plugin.MojoExecutionException;
> +import org.apache.maven.plugin.MojoFailureException;
> +import org.apache.maven.plugins.annotations.Mojo;
> +
> +/**
> + * Runs the JavadocFixTool on the specified directories in fix mode
> + */
> +@Mojo (name = "fix")
> +public class FixMojo extends AbstractJavadocFixToolMojo {
> +
> +    public void execute() throws MojoExecutionException, MojoFailureException {
> +        execute(true);        
> +    }
> +
> +}
> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/FixMojo.java
> ------------------------------------------------------------------------------
>    svn:eol-style = native
> 
> Propchange: commons/sandbox/commons-javadocfix-plugin/trunk/src/main/java/org/apache/commons/plugins/javadocfix/FixMojo.java
> ------------------------------------------------------------------------------
>    svn:keywords = Author Date Id Revision
> 
> 


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