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From "Continuum@vmbuild" <...@commons.apache.org>
Subject [continuum] BUILD FAILURE: Apache Commons - Commons Math -
Date Wed, 15 Aug 2012 03:41:23 GMT
          Group (shared) Maven 2 Build Definition (Java 1.5)
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X-Continuum-Build-Host: vmbuild
X-Continuum-Project-Id: 97
X-Continuum-Project-Name: Commons Math

Online report : http://vmbuild.apache.org/continuum/buildResult.action?buildId=24596&projectId=97

Build statistics:
  State: Failed
  Previous State: Ok
  Started at: Wed 15 Aug 2012 03:35:33 +0000
  Finished at: Wed 15 Aug 2012 03:41:20 +0000
  Total time: 5m 47s
  Build Trigger: Schedule
  Build Number: 915
  Exit code: 1
  Building machine hostname: vmbuild
  Operating system : Linux(unknown)
  Java Home version : 
          java version "1.6.0_30"
          Java(TM) SE Runtime Environment (build 1.6.0_30-b12)
          Java HotSpot(TM) 64-Bit Server VM (build 20.5-b03, mixed mode)
        
  Builder version :
          Apache Maven 2.2.1 (r801777; 2009-08-06 19:16:01+0000)
          Java version: 1.6.0_30
          Java home: /usr/lib/jvm/jdk1.6.0_30/jre
          Default locale: en_AU, platform encoding: UTF-8
          OS name: "linux" version: "2.6.32-31-server" arch: "amd64" Family: "unix"
    
****************************************************************************
SCM Changes:
****************************************************************************
Changed: sebb @ Tue 7 Aug 2012 12:38:06 +0000
Comment: Javadoc syntax
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/genetics/CycleCrossover.java
( 1370211 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/genetics/OrderedCrossover.java
( 1370211 )

Changed: sebb @ Tue 7 Aug 2012 12:38:39 +0000
Comment: Javadoc syntax
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/special/Gamma.java ( 1370214
)

Changed: sebb @ Tue 7 Aug 2012 12:38:59 +0000
Comment: Missing @Deprecated
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/distribution/AbstractIntegerDistribution.java
( 1370215 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/distribution/AbstractRealDistribution.java
( 1370215 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/distribution/GammaDistribution.java
( 1370215 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/AbstractConvergenceChecker.java
( 1370215 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/fitting/PolynomialFitter.java
( 1370215 )

Changed: sebb @ Tue 7 Aug 2012 12:39:29 +0000
Comment: Unused imports
Files changed:
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/optimization/fitting/CurveFitterTest.java
( 1370217 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizerTestValidation.java
( 1370217 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/optimization/general/CircleProblem.java
( 1370217 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/optimization/general/RandomStraightLinePointGenerator.java
( 1370217 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/optimization/general/StraightLineProblem.java
( 1370217 )

Changed: sebb @ Tue 7 Aug 2012 12:40:56 +0000
Comment: Missing @Deprecated
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/linear/EigenDecomposition.java
( 1370219 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.java
( 1370219 )

Changed: sebb @ Tue 7 Aug 2012 12:42:33 +0000
Comment: Raw types
Files changed:
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/optimization/fitting/CurveFitterTest.java
( 1370220 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/optimization/fitting/PolynomialFitterTest.java
( 1370220 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/optimization/univariate/BrentOptimizerTest.java
( 1370220 )

Changed: sebb @ Tue 7 Aug 2012 12:43:41 +0000
Comment: Javadoc fixes (not thrown)
Files changed:
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/distribution/PoissonDistributionTest.java
( 1370224 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/stat/descriptive/AggregateSummaryStatisticsTest.java
( 1370224 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/stat/regression/OLSMultipleLinearRegressionTest.java
( 1370224 )

Changed: sebb @ Tue 7 Aug 2012 12:48:25 +0000
Comment: MIssing @Override
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/fitting/GaussianFitter.java
( 1370227 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/distribution/AbstractRealDistributionTest.java
( 1370227 )

Changed: sebb @ Tue 7 Aug 2012 12:49:31 +0000
Comment: MIssing @Override
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateSimpleBoundsOptimizer.java
( 1370228 )

Changed: erans @ Tue 7 Aug 2012 21:38:58 +0000
Comment: MATH-843
Corrected documentation for "Precision.EPSILON".
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/util/Precision.java (
1370547 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/util/PrecisionTest.java
( 1370547 )

Changed: erans @ Wed 8 Aug 2012 14:18:16 +0000
Comment: MATH-815
Initial commit. Units test are yet to be added. This version also
contains a bug. Code contributed by Jared Becksfort, included with
modifications. [Cf. comments on JIRA.]
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/distribution/AbstractMultivariateRealDistribution.java
( 1370782 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/distribution/MultivariateNormalDistribution.java
( 1370782 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/distribution/MultivariateRealDistribution.java
( 1370782 )

Changed: luc @ Wed 8 Aug 2012 20:33:43 +0000
Comment: Added a new package dealing with differentials.

The package is intended to deals with one or more free parameters and
derivation order 1 or higher.

The core elements are based on Dan Kalman paper "Recursive Multivariate
Automatic Differentiation", Mathematics Magazine, vol. 75, no. 3, June
2002. For efficiency, the recursive structure is compiled as simple
loops once for each pair (number of free parameters, derivation order).

This is work in progress, there are still some features missing even in
the most basic blocks (typically the asin, acos, atan, atant2 and taylor
methods in DSCompiler). There are also still no high level
differentiator implementation.
Files changed:
  /commons/proper/math/trunk/src/changes/changes.xml ( 1370951 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation
( 1370951 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/DSCompiler.java
( 1370951 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructure.java
( 1370951 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/UnivariateDifferential.java
( 1370951 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/UnivariateDifferentiator.java
( 1370951 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/package-info.java
( 1370951 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/util/FastMath.java ( 1370951
)
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/analysis/differentiation
( 1370951 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/analysis/differentiation/DSCompilerTest.java
( 1370951 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructureTest.java
( 1370951 )

Changed: erans @ Wed 8 Aug 2012 21:52:22 +0000
Comment: MATH-815
Code update. Unit test.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/distribution/MultivariateNormalDistribution.java
( 1370984 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/distribution/MultivariateNormalDistributionTest.java
( 1370984 )

Changed: luc @ Thu 9 Aug 2012 07:54:06 +0000
Comment: partially reverted commit 1370951 as it trashed earlier correction in FastMath
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/util/FastMath.java ( 1371073
)

Changed: luc @ Thu 9 Aug 2012 08:07:25 +0000
Comment: added a function to raise a double to an int power
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/util/FastMath.java ( 1371082
)

Changed: erans @ Thu 9 Aug 2012 11:40:01 +0000
Comment: Unit test for "FastMath.pow(double,int)".
Files changed:
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/util/FastMathTest.java
( 1371170 )

Changed: erans @ Thu 9 Aug 2012 15:55:18 +0000
Comment: Code and javadoc cleanup.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/PowellOptimizer.java
( 1371264 )

Changed: luc @ Fri 10 Aug 2012 11:54:46 +0000
Comment: Fixed accuracy issues in FastMath.pow(double, int).

The fixed version is slightly slower, but still much faster than
FastMath.pow(double, double). Some random testing showed that the
accuracy is now always better than 0.5ulp, even for large exponent.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/util/FastMath.java ( 1371670
)
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/util/FastMathTest.java
( 1371670 )

Changed: luc @ Fri 10 Aug 2012 11:59:20 +0000
Comment: Forward the underlying error message when an exception is triggered.
Files changed:
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/PerfTestUtils.java ( 1371671
)

Changed: luc @ Fri 10 Aug 2012 12:15:23 +0000
Comment: Added Stirling numbers of the second kind in ArithmeticUtils.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/util/ArithmeticUtils.java
( 1371680 )
  /commons/proper/math/trunk/src/site/xdoc/userguide/index.xml ( 1371680 )
  /commons/proper/math/trunk/src/site/xdoc/userguide/utilities.xml ( 1371680 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/util/ArithmeticUtilsTest.java
( 1371680 )

Changed: luc @ Fri 10 Aug 2012 12:18:12 +0000
Comment: New test for sin and cos derivatives.
Files changed:
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructureTest.java
( 1371681 )

Changed: luc @ Fri 10 Aug 2012 12:19:48 +0000
Comment: Added forgotten notification of recent changes.
Files changed:
  /commons/proper/math/trunk/src/changes/changes.xml ( 1371683 )

Changed: luc @ Fri 10 Aug 2012 18:33:06 +0000
Comment: Completed support fo asin, acos and atan in DSCompiler.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/DSCompiler.java
( 1371805 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructureTest.java
( 1371805 )

Changed: luc @ Fri 10 Aug 2012 18:58:58 +0000
Comment: Added support for x^y in DerivativeStructure and DSCompiler.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/DSCompiler.java
( 1371808 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructure.java
( 1371808 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructureTest.java
( 1371808 )

Changed: erans @ Sun 12 Aug 2012 21:22:58 +0000
Comment: Code cleanup.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/util/FastMath.java ( 1372199
)

Changed: erans @ Sun 12 Aug 2012 22:55:34 +0000
Comment: Fixed CheckStyle warnings.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/distribution/AbstractMultivariateRealDistribution.java
( 1372208 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/distribution/MultivariateNormalDistribution.java
( 1372208 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/distribution/MultivariateRealDistribution.java
( 1372208 )

Changed: luc @ Mon 13 Aug 2012 13:06:26 +0000
Comment: Added support for atan2 in DSCompiler.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/DSCompiler.java
( 1372414 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructureTest.java
( 1372414 )

Changed: luc @ Mon 13 Aug 2012 14:14:17 +0000
Comment: Added Taylor expansion for DSCompiler.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/DSCompiler.java
( 1372432 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructure.java
( 1372432 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructureTest.java
( 1372432 )

Changed: erans @ Mon 13 Aug 2012 19:14:00 +0000
Comment: MATH-815
Unit test update (patch provided by Jared Becksfort).
Files changed:
  /commons/proper/math/trunk/src/changes/changes.xml ( 1372556 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/distribution/MultivariateNormalDistributionTest.java
( 1372556 )

Changed: luc @ Tue 14 Aug 2012 09:45:36 +0000
Comment: Simplified tangent higher derivatives computation.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/DSCompiler.java
( 1372812 )

Changed: luc @ Tue 14 Aug 2012 14:25:50 +0000
Comment: Added hyperbolic trigonometric functions and inverses to DSCompiler.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/DSCompiler.java
( 1372902 )
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructure.java
( 1372902 )
  /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructureTest.java
( 1372902 )

Changed: tn @ Tue 14 Aug 2012 18:50:53 +0000
Comment: Javadoc fixes.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/util/CompositeFormat.java
( 1373026 )

Changed: erans @ Tue 14 Aug 2012 22:02:06 +0000
Comment: Fixed FindBugs warning.
Files changed:
  /commons/proper/math/trunk/src/main/java/org/apache/commons/math3/linear/EigenDecomposition.java
( 1373134 )

****************************************************************************
Dependencies Changes:
****************************************************************************
No dependencies changed


****************************************************************************
Build Definition:
****************************************************************************
POM filename: pom.xml
Goals: clean deploy   
Arguments: --batch-mode -Pjava-1.5 -Dgpg.skip -Prelease
Build Fresh: false
Always Build: false
Default Build Definition: true
Schedule: COMMONS_SCHEDULE
Profile Name: Maven 2.2.1
Description: Group (shared) Maven 2 Build Definition (Java 1.5)

****************************************************************************
Test Summary:
****************************************************************************
Tests: 4057
Failures: 1
Errors: 0
Success Rate: 99
Total time: 282.23117

****************************************************************************
Test Failures:
****************************************************************************

EigenDecompositionTest
    testNormalDistributionUnsymmetricMatrix :
  java.lang.AssertionError
  java.lang.AssertionError: The norm of (X-Y) is too large
	at org.junit.Assert.fail(Assert.java:93)
	at org.junit.Assert.assertTrue(Assert.java:43)
	at org.apache.commons.math3.linear.EigenDecompositionTest.checkUnsymmetricMatrix(EigenDecompositionTest.java:422)
	at org.apache.commons.math3.linear.EigenDecompositionTest.testNormalDistributionUnsymmetricMatrix(EigenDecompositionTest.java:404)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:592)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
	at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
	at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
	at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
	at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
	at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:236)
	at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:134)
	at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:592)
	at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
	at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
	at org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
	at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:103)
	at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:74)

  



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