Return-Path: X-Original-To: archive-asf-public-internal@cust-asf2.ponee.io Delivered-To: archive-asf-public-internal@cust-asf2.ponee.io Received: from cust-asf.ponee.io (cust-asf.ponee.io [163.172.22.183]) by cust-asf2.ponee.io (Postfix) with ESMTP id C7C8D200C8B for ; Mon, 8 May 2017 01:57:37 +0200 (CEST) Received: by cust-asf.ponee.io (Postfix) id C65E6160BC6; Sun, 7 May 2017 23:57:37 +0000 (UTC) Delivered-To: archive-asf-public@cust-asf.ponee.io Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by cust-asf.ponee.io (Postfix) with SMTP id 2019D160BB1 for ; Mon, 8 May 2017 01:57:35 +0200 (CEST) Received: (qmail 47795 invoked by uid 500); 7 May 2017 23:57:35 -0000 Mailing-List: contact commits-help@commons.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: dev@commons.apache.org Delivered-To: mailing list commits@commons.apache.org Received: (qmail 47785 invoked by uid 99); 7 May 2017 23:57:35 -0000 Received: from git1-us-west.apache.org (HELO git1-us-west.apache.org) (140.211.11.23) by apache.org (qpsmtpd/0.29) with ESMTP; Sun, 07 May 2017 23:57:35 +0000 Received: by git1-us-west.apache.org (ASF Mail Server at git1-us-west.apache.org, from userid 33) id 00DEFE00C4; Sun, 7 May 2017 23:57:34 +0000 (UTC) Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit From: erans@apache.org To: commits@commons.apache.org Date: Sun, 07 May 2017 23:57:34 -0000 Message-Id: <708bab591e6b42c2a541d5fec5189470@git.apache.org> X-Mailer: ASF-Git Admin Mailer Subject: [1/2] commons-numbers git commit: NUMBERS-33: "Gamma" family of functions (port from "Commons Math"). archived-at: Sun, 07 May 2017 23:57:38 -0000 Repository: commons-numbers Updated Branches: refs/heads/task_NUMBERS-33__Gamma [created] 0c9f1cde2 http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/0c9f1cde/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/GammaTest.java ---------------------------------------------------------------------- diff --git a/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/GammaTest.java b/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/GammaTest.java new file mode 100644 index 0000000..ec7bcb9 --- /dev/null +++ b/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/GammaTest.java @@ -0,0 +1,557 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.apache.commons.numbers.gamma; + +import org.junit.Assert; +import org.junit.Test; + +/** + * Tests for {@link Gamma}. + */ +public class GammaTest { + private static final Gamma FUNCTION = new Gamma(); + + /** + * Reference data for the {@link Gamma#value(double)} function. This + * data was generated with the following Maxima script. + * + *
+     * kill(all);
+     *
+     * fpprec : 64;
+     *
+     * EPSILON : 10**(-fpprec + 1);
+     * isInteger(x) := abs(x - floor(x)) <= EPSILON * abs(x);
+     *
+     * x : makelist(bfloat(i / 8), i, -160, 160);
+     * x : append(x, makelist(bfloat(i / 2), i, 41, 200));
+     *
+     * for i : 1 while i <= length(x) do if not(isInteger(x[i])) then
+     *     print("{", float(x[i]), ",", float(gamma(x[i])), "},");
+     * 
+ */ + private static final double[][] GAMMA_REF = { + { - 19.875 , 4.920331854832504e-18 }, + { - 19.75 , 3.879938752480031e-18 }, + { - 19.625 , 4.323498423815027e-18 }, + { - 19.5 , 5.811045977502237e-18 }, + { - 19.375 , 9.14330910942125e-18 }, + { - 19.25 , 1.735229114436739e-17 }, + { - 19.125 , 4.653521565668223e-17 }, + { - 18.875 , - 9.779159561479603e-17 }, + { - 18.75 , - 7.662879036148061e-17 }, + { - 18.625 , - 8.484865656736991e-17 }, + { - 18.5 , - 1.133153965612936e-16 }, + { - 18.375 , - 1.771516139950367e-16 }, + { - 18.25 , - 3.340316045290721e-16 }, + { - 18.125 , - 8.899859994340475e-16 }, + { - 17.875 , 1.845816367229275e-15 }, + { - 17.75 , 1.436789819277761e-15 }, + { - 17.625 , 1.580306228567265e-15 }, + { - 17.5 , 2.096334836383932e-15 }, + { - 17.375 , 3.255160907158799e-15 }, + { - 17.25 , 6.096076782655566e-15 }, + { - 17.125 , 1.613099623974211e-14 }, + { - 16.875 , - 3.29939675642233e-14 }, + { - 16.75 , - 2.550301929218027e-14 }, + { - 16.625 , - 2.785289727849803e-14 }, + { - 16.5 , - 3.66858596367188e-14 }, + { - 16.375 , - 5.655842076188414e-14 }, + { - 16.25 , - 1.051573245008085e-13 }, + { - 16.125 , - 2.762433106055837e-13 }, + { - 15.875 , 5.567732026462681e-13 }, + { - 15.75 , 4.271755731440195e-13 }, + { - 15.625 , 4.630544172550298e-13 }, + { - 15.5 , 6.053166840058604e-13 }, + { - 15.375 , 9.261441399758529e-13 }, + { - 15.25 , 1.708806523138138e-12 }, + { - 15.125 , 4.454423383515037e-12 }, + { - 14.875 , - 8.838774592009505e-12 }, + { - 14.75 , - 6.728015277018307e-12 }, + { - 14.625 , - 7.235225269609841e-12 }, + { - 14.5 , - 9.382408602090835e-12 }, + { - 14.375 , - 1.423946615212874e-11 }, + { - 14.25 , - 2.605929947785661e-11 }, + { - 14.125 , - 6.737315367566492e-11 }, + { - 13.875 , 1.314767720561414e-10 }, + { - 13.75 , 9.923822533602004e-11 }, + { - 13.625 , 1.058151695680439e-10 }, + { - 13.5 , 1.360449247303171e-10 }, + { - 13.375 , 2.046923259368506e-10 }, + { - 13.25 , 3.713450175594567e-10 }, + { - 13.125 , 9.516457956687671e-10 }, + { - 12.875 , - 1.8242402122789617e-9 }, + { - 12.75 , - 1.3645255983702756e-9 }, + { - 12.625 , - 1.4417316853645984e-9 }, + { - 12.5 , - 1.836606483859281e-9 }, + { - 12.375 , - 2.7377598594053765e-9 }, + { - 12.25 , - 4.9203214826628017e-9 }, + { - 12.125 , - 1.2490351068152569e-8 }, + { - 11.875 , 2.3487092733091633e-8 }, + { - 11.75 , 1.7397701379221012e-8 }, + { - 11.625 , 1.8201862527728055e-8 }, + { - 11.5 , 2.295758104824101e-8 }, + { - 11.375 , 3.3879778260141535e-8 }, + { - 11.25 , 6.027393816261931e-8 }, + { - 11.125 , 1.5144550670134987e-7 }, + { - 10.875 , - 2.7890922620546316e-7 }, + { - 10.75 , - 2.044229912058469e-7 }, + { - 10.625 , - 2.1159665188483867e-7 }, + { - 10.5 , - 2.640121820547716e-7 }, + { - 10.375 , - 3.8538247770911e-7 }, + { - 10.25 , - 6.780818043294673e-7 }, + { - 10.125 , - 1.6848312620525174e-6 }, + { - 9.875 , 3.0331378349844124e-6 }, + { - 9.75 , 2.1975471554628537e-6 }, + { - 9.625 , 2.2482144262764103e-6 }, + { 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5.75 , .009807455518953468 }, + { - 5.625 , .009428080951397862 }, + { - 5.5 , .01091265478190986 }, + { - 5.375 , 0.014759728736682 }, + { - 5.25 , 0.0240336460690817 }, + { - 5.125 , .05519486159234969 }, + { - 4.875 , - 0.0845529468631229 }, + { - 4.75 , - .05639286923398244 }, + { - 4.625 , - .05303295535161297 }, + { - 4.5 , - .06001960130050425 }, + { - 4.375 , - .07933354195966577 }, + { - 4.25 , - .1261766418626789 }, + { - 4.125 , - .2828736656607921 }, + { - 3.875 , .4121956159577241 }, + { - 3.75 , .2678661288614166 }, + { - 3.625 , 0.24527741850121 }, + { - 3.5 , .2700882058522691 }, + { - 3.375 , .3470842460735378 }, + { - 3.25 , .5362507279163854 }, + { - 3.125 , 1.166853870850768 }, + { - 2.875 , - 1.597258011836181 }, + { - 2.75 , - 1.004497983230312 }, + { - 2.625 , - .8891306420668862 }, + { - 2.5 , - .9453087204829419 }, + { - 2.375 , - 1.17140933049819 }, + { - 2.25 , - 1.742814865728253 }, + { - 2.125 , - 3.646418346408649 }, + { - 1.875 , 4.59211678402902 }, + { - 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1.133003096319346 }, + { 2.375 , 1.22225615758981 }, + { 2.5 , 1.329340388179137 }, + { 2.625 , 1.456933205091972 }, + { 2.75 , 1.608359421985546 }, + { 2.875 , 1.78771089889694 }, + { 3.0 , 2.0 }, + { 3.125 , 2.251353641828193 }, + { 3.25 , 2.549256966718529 }, + { 3.375 , 2.902858374275799 }, + { 3.5 , 3.323350970447843 }, + { 3.625 , 3.824449663366426 }, + { 3.75 , 4.422988410460251 }, + { 3.875 , 5.139668834328703 }, + { 4.0 , 6.0 }, + { 4.125 , 7.035480130713102 }, + { 4.25 , 8.28508514183522 }, + { 4.375 , 9.797147013180819 }, + { 4.5 , 11.63172839656745 }, + { 4.625 , 13.86363002970329 }, + { 4.75 , 16.58620653922594 }, + { 4.875 , 19.91621673302373 }, + { 5.0 , 24.0 }, + { 5.125 , 29.02135553919155 }, + { 5.25 , 35.21161185279968 }, + { 5.375 , 42.86251818266609 }, + { 5.5 , 52.34277778455352 }, + { 5.625 , 64.11928888737773 }, + { 5.75 , 78.78448106132322 }, + { 5.875 , 97.09155657349066 }, + { 6.0 , 120.0 }, + { 6.125 , 148.7344471383567 }, + { 6.25 , 184.8609622271983 }, + { 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850461.1058503906 }, + { 10.5 , 1133278.388948786 }, + { 10.625 , 1512504.921682859 }, + { 10.75 , 2021746.348929925 }, + { 10.875 , 2706562.533732806 }, + { 11.0 , 3628800.0 }, + { 11.125 , 4872521.900985687 }, + { 11.25 , 6552134.137490662 }, + { 11.375 , 8823533.973197803 }, + { 11.5 , 1.1899423083962249e+7 }, + { 11.625 , 1.6070364792880382e+7 }, + { 11.75 , 2.1733773250996688e+7 }, + { 11.875 , 2.943386755434427e+7 }, + { 12.0 , 3.99168e+7 }, + { 12.125 , 5.420680614846578e+7 }, + { 12.25 , 7.371150904676994e+7 }, + { 12.375 , 1.0036769894512501e+8 }, + { 12.5 , 1.3684336546556586e+8 }, + { 12.625 , 1.8681799071723443e+8 }, + { 12.75 , 2.5537183569921107e+8 }, + { 12.875 , 3.4952717720783816e+8 }, + { 13.0 , 4.790016e+8 }, + { 13.125 , 6.572575245501475e+8 }, + { 13.25 , 9.029659858229319e+8 }, + { 13.375 , 1.2420502744459219e+9 }, + { 13.5 , 1.7105420683195732e+9 }, + { 13.625 , 2.3585771328050845e+9 }, + { 13.75 , 3.2559909051649416e+9 }, + { 13.875 , 4.500162406550916e+9 }, + { 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1.124000727777608e+21 }, + { 23.5 , 5.361303587544415e+21 }, + { 24.0 , 2.585201673888498e+22 }, + { 24.5 , 1.259906343072938e+23 }, + { 25.0 , 6.204484017332395e+23 }, + { 25.5 , 3.086770540528697e+24 }, + { 26.0 , 1.551121004333099e+25 }, + { 26.5 , 7.871264878348176e+25 }, + { 27.0 , 4.032914611266056e+26 }, + { 27.5 , 2.085885192762267e+27 }, + { 28.0 , 1.088886945041835e+28 }, + { 28.5 , 5.736184280096234e+28 }, + { 29.0 , 3.048883446117139e+29 }, + { 29.5 , 1.634812519827427e+30 }, + { 30.0 , 8.841761993739702e+30 }, + { 30.5 , 4.822696933490909e+31 }, + { 31.0 , 2.65252859812191e+32 }, + { 31.5 , 1.470922564714727e+33 }, + { 32.0 , 8.222838654177922e+33 }, + { 32.5 , 4.633406078851391e+34 }, + { 33.0 , 2.631308369336935e+35 }, + { 33.5 , 1.505856975626702e+36 }, + { 34.0 , 8.683317618811885e+36 }, + { 34.5 , 5.044620868349451e+37 }, + { 35.0 , 2.952327990396041e+38 }, + { 35.5 , 1.740394199580561e+39 }, + { 36.0 , 1.033314796638614e+40 }, + { 36.5 , 6.178399408510991e+40 }, + { 37.0 , 3.719933267899013e+41 }, + { 37.5 , 2.255115784106512e+42 }, + { 38.0 , 1.376375309122634e+43 }, + { 38.5 , 8.456684190399419e+43 }, + { 39.0 , 5.230226174666011e+44 }, + { 39.5 , 3.255823413303776e+45 }, + { 40.0 , 2.039788208119745e+46 }, + { 40.5 , 1.286050248254992e+47 }, + { 41.0 , 8.159152832478976e+47 }, + { 41.5 , 5.208503505432716e+48 }, + { 42.0 , 3.345252661316381e+49 }, + { 42.5 , 2.161528954754577e+50 }, + { 43.0 , 1.40500611775288e+51 }, + { 43.5 , 9.186498057706953e+51 }, + { 44.0 , 6.041526306337383e+52 }, + { 44.5 , 3.996126655102524e+53 }, + { 45.0 , 2.658271574788449e+54 }, + { 45.5 , 1.778276361520623e+55 }, + { 46.0 , 1.196222208654802e+56 }, + { 46.5 , 8.091157444918836e+56 }, + { 47.0 , 5.502622159812088e+57 }, + { 47.5 , 3.762388211887259e+58 }, + { 48.0 , 2.586232415111682e+59 }, + { 48.5 , 1.787134400646448e+60 }, + { 49.0 , 1.241391559253607e+61 }, + { 49.5 , 8.667601843135273e+61 }, + { 50.0 , 6.082818640342675e+62 }, + { 50.5 , 4.290462912351959e+63 }, + { 51.0 , 3.041409320171338e+64 }, + { 51.5 , 2.16668377073774e+65 }, + { 52.0 , 1.551118753287382e+66 }, + { 52.5 , 1.115842141929936e+67 }, + { 53.0 , 8.065817517094388e+67 }, + { 53.5 , 5.858171245132164e+68 }, + { 54.0 , 4.274883284060025e+69 }, + { 54.5 , 3.134121616145708e+70 }, + { 55.0 , 2.308436973392413e+71 }, + { 55.5 , 1.70809628079941e+72 }, + { 56.0 , 1.269640335365828e+73 }, + { 56.5 , 9.479934358436728e+73 }, + { 57.0 , 7.109985878048635e+74 }, + { 57.5 , 5.356162912516752e+75 }, + { 58.0 , 4.052691950487721e+76 }, + { 58.5 , 3.079793674697132e+77 }, + { 59.0 , 2.350561331282878e+78 }, + { 59.5 , 1.801679299697822e+79 }, + { 60.0 , 1.386831185456898e+80 }, + { 60.5 , 1.071999183320204e+81 }, + { 61.0 , 8.320987112741391e+81 }, + { 61.5 , 6.485595059087236e+82 }, + { 62.0 , 5.075802138772249e+83 }, + { 62.5 , 3.98864096133865e+84 }, + { 63.0 , 3.146997326038794e+85 }, + { 63.5 , 2.492900600836656e+86 }, + { 64.0 , 1.98260831540444e+87 }, + { 64.5 , 1.582991881531277e+88 }, + { 65.0 , 1.268869321858841e+89 }, + { 65.5 , 1.021029763587673e+90 }, + { 66.0 , 8.247650592082472e+90 }, + { 66.5 , 6.687744951499262e+91 }, + { 67.0 , 5.443449390774431e+92 }, + { 67.5 , 4.447350392747009e+93 }, + { 68.0 , 3.647111091818868e+94 }, + { 68.5 , 3.001961515104231e+95 }, + { 69.0 , 2.48003554243683e+96 }, + { 69.5 , 2.056343637846398e+97 }, + { 70.0 , 1.711224524281413e+98 }, + { 70.5 , 1.429158828303247e+99 }, + { 71.0 , 1.19785716699699e+100 }, + { 71.5 , 1.00755697395379e+101 }, + { 72.0 , 8.50478588567862e+101 }, + { 72.5 , 7.20403236376959e+102 }, + { 73.0 , 6.12344583768861e+103 }, + { 73.5 , 5.22292346373295e+104 }, + { 74.0 , 4.47011546151268e+105 }, + { 74.5 , 3.83884874584372e+106 }, + { 75.0 , 3.30788544151939e+107 }, + { 75.5 , 2.85994231565357e+108 }, + { 76.0 , 2.48091408113954e+109 }, + { 76.5 , 2.15925644831845e+110 }, + { 77.0 , 1.88549470166605e+111 }, + { 77.5 , 1.65183118296361e+112 }, + { 78.0 , 1.45183092028286e+113 }, + { 78.5 , 1.2801691667968e+114 }, + { 79.0 , 1.13242811782063e+115 }, + { 79.5 , 1.00493279593549e+116 }, + { 80.0 , 8.94618213078298e+116 }, + { 80.5 , 7.98921572768712e+117 }, + { 81.0 , 7.15694570462638e+118 }, + { 81.5 , 6.43131866078814e+119 }, + { 82.0 , 5.79712602074737e+120 }, + { 82.5 , 5.24152470854233e+121 }, + { 83.0 , 4.75364333701284e+122 }, + { 83.5 , 4.32425788454742e+123 }, + { 84.0 , 3.94552396972066e+124 }, + { 84.5 , 3.6107553335971e+125 }, + { 85.0 , 3.31424013456535e+126 }, + { 85.5 , 3.05108825688955e+127 }, + { 86.0 , 2.81710411438055e+128 }, + { 86.5 , 2.60868045964056e+129 }, + { 87.0 , 2.42270953836727e+130 }, + { 87.5 , 2.25650859758909e+131 }, + { 88.0 , 2.10775729837953e+132 }, + { 88.5 , 1.97444502289045e+133 }, + { 89.0 , 1.85482642257398e+134 }, + { 89.5 , 1.74738384525805e+135 }, + { 90.0 , 1.65079551609085e+136 }, + { 90.5 , 1.56390854150595e+137 }, + { 91.0 , 1.48571596448176e+138 }, + { 91.5 , 1.41533723006289e+139 }, + { 92.0 , 1.3520015276784e+140 }, + { 92.5 , 1.29503356550754e+141 }, + { 93.0 , 1.24384140546413e+142 }, + { 93.5 , 1.19790604809448e+143 }, + { 94.0 , 1.15677250708164e+144 }, + { 94.5 , 1.12004215496834e+145 }, + { 95.0 , 1.08736615665674e+146 }, + { 95.5 , 1.05843983644508e+147 }, + { 96.0 , 1.03299784882391e+148 }, + { 96.5 , 1.01081004380505e+149 }, + { 97.0 , 9.9167793487095e+149 }, + { 97.5 , 9.75431692271873e+150 }, + { 98.0 , 9.61927596824821e+151 }, + { 98.5 , 9.51045899965076e+152 }, + { 99.0 , 9.42689044888325e+153 }, + { 99.5 , 9.367802114656e+154 }, + { 100.0 , 9.33262154439441e+155 }, + }; + + @Test + public void testGamma() { + for (int i = 0; i < GAMMA_REF.length; i++) { + final double[] ref = GAMMA_REF[i]; + final double x = ref[0]; + final double expected = ref[1]; + final double actual = FUNCTION.value(x); + final double absX = Math.abs(x); + final int ulps; + if (absX <= 8.0) { + ulps = 3; + } else if (absX <= 20.0) { + ulps = 5; + } else if (absX <= 30.0) { + ulps = 50; + } else if (absX <= 50.0) { + ulps = 180; + } else { + ulps = 500; + } + final double tol = ulps * Math.ulp(expected); + Assert.assertEquals(Double.toString(x), expected, actual, tol); + } + } + + @Test + public void testGammaNegativeInteger() { + for (int i = -100; i <= 0; i++) { + Assert.assertTrue(Integer.toString(i), Double.isNaN(FUNCTION.value(i))); + } + } + + @Test + public void testGammaNegativeDouble() { + // check that the gamma function properly switches sign + // see: https://en.wikipedia.org/wiki/Gamma_function + + double previousGamma = FUNCTION.value(-18.5); + for (double x = -19.5; x > -25; x -= 1.0) { + double gamma = FUNCTION.value(x); + Assert.assertEquals( (int) Math.signum(previousGamma), + - (int) Math.signum(gamma)); + + previousGamma = gamma; + } + } +} http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/0c9f1cde/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/InvGamma1pm1Test.java ---------------------------------------------------------------------- diff --git a/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/InvGamma1pm1Test.java b/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/InvGamma1pm1Test.java new file mode 100644 index 0000000..6e3c97a --- /dev/null +++ b/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/InvGamma1pm1Test.java @@ -0,0 +1,91 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.apache.commons.numbers.gamma; + +import org.junit.Assert; +import org.junit.Test; + +/** + * Tests for {@link InvGamma1pm1}. + */ +public class InvGamma1pm1Test { + private static final InvGamma1pm1 FUNCTION = InvGamma1pm1.instance; + + /** + *

+ * Reference values for the {@link Gamma#invGamma1pm1(double)} method. + * These values were generated with the following Maxima script + *

+ * + *
+     * kill(all);
+     *
+     * fpprec : 64;
+     * gam1(x) := 1 / gamma(1 + x) - 1;
+     * x : makelist(bfloat(i / 8), i, -4, 12);
+     *
+     * for i : 1 while i <= length(x) do print("{",
+     *                                         float(x[i]),
+     *                                         ",",
+     *                                         float(gam1(x[i])),
+     *                                         "},");
+     * 
+ */ + private static final double[][] INV_GAMMA1P_M1_REF = { + { -0.5 , -.4358104164522437 }, + { -0.375 , -.3029021533379859 }, + { -0.25 , -0.183951060901737 }, + { -0.125 , -.08227611018520711 }, + { 0.0 , 0.0 }, + { 0.125 , .06186116458306091 }, + { 0.25 , .1032626513208373 }, + { 0.375 , .1249687649039041 }, + { 0.5 , .1283791670955126 }, + { 0.625 , .1153565546592225 }, + { 0.75 , 0.0880652521310173 }, + { 0.875 , .04882730264547758 }, + { 1.0 , 0.0 }, + { 1.125 , -.05612340925950141 }, + { 1.25 , -.1173898789433302 }, + { 1.375 , -.1818408982517061 }, + { 1.5 , -0.247747221936325 }, + }; + + @Test + public void testInvGamma1pm1() { + final int ulps = 3; + for (int i = 0; i < INV_GAMMA1P_M1_REF.length; i++) { + final double[] ref = INV_GAMMA1P_M1_REF[i]; + final double x = ref[0]; + final double expected = ref[1]; + final double actual = FUNCTION.value(x); + final double tol = ulps * Math.ulp(expected); + Assert.assertEquals(Double.toString(x), expected, actual, tol); + } + } + + @Test(expected=GammaException.class) + public void testInvGamma1pm1Precondition1() { + FUNCTION.value(-0.51); + } + + @Test(expected=GammaException.class) + public void testInvGamma1pm1Precondition2() { + FUNCTION.value(1.51); + } +} http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/0c9f1cde/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/LogGamma1pTest.java ---------------------------------------------------------------------- diff --git a/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/LogGamma1pTest.java b/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/LogGamma1pTest.java new file mode 100644 index 0000000..ffdbe01 --- /dev/null +++ b/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/LogGamma1pTest.java @@ -0,0 +1,70 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.apache.commons.numbers.gamma; + +import org.junit.Assert; +import org.junit.Test; + +/** + * Tests for {@link LogGamma1p}. + */ +public class LogGamma1pTest { + private static final LogGamma1p FUNCTION = LogGamma1p.instance; + + private static final double[][] LOG_GAMMA1P_REF = { + { - 0.5 , .5723649429247001 }, + { - 0.375 , .3608294954889402 }, + { - 0.25 , .2032809514312954 }, + { - 0.125 , .08585870722533433 }, + { 0.0 , 0.0 }, + { 0.125 , - .06002318412603958 }, + { 0.25 , - .09827183642181316 }, + { 0.375 , - .1177552707410788 }, + { 0.5 , - .1207822376352452 }, + { 0.625 , - .1091741337567954 }, + { 0.75 , - .08440112102048555 }, + { 0.875 , - 0.0476726853991883 }, + { 1.0 , 0.0 }, + { 1.125 , .05775985153034387 }, + { 1.25 , .1248717148923966 }, + { 1.375 , .2006984603774558 }, + { 1.5 , .2846828704729192 }, + }; + + @Test + public void testLogGamma1p() { + final int ulps = 3; + for (int i = 0; i < LOG_GAMMA1P_REF.length; i++) { + final double[] ref = LOG_GAMMA1P_REF[i]; + final double x = ref[0]; + final double expected = ref[1]; + final double actual = FUNCTION.value(x); + final double tol = ulps * Math.ulp(expected); + Assert.assertEquals(Double.toString(x), expected, actual, tol); + } + } + + @Test(expected=GammaException.class) + public void testLogGamma1pPrecondition1() { + FUNCTION.value(-0.51); + } + + @Test(expected=GammaException.class) + public void testLogGamma1pPrecondition2() { + FUNCTION.value(1.51); + } +} http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/0c9f1cde/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/LogGammaTest.java ---------------------------------------------------------------------- diff --git a/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/LogGammaTest.java b/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/LogGammaTest.java new file mode 100644 index 0000000..9568443 --- /dev/null +++ b/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/LogGammaTest.java @@ -0,0 +1,232 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.apache.commons.numbers.gamma; + +import org.junit.Assert; +import org.junit.Test; + +/** + * Tests for {@link LogGamma}. + */ +public class LogGammaTest { + private static final LogGamma FUNCTION = LogGamma.instance; + + @Test + public void testLogGammaNan() { + testLogGamma(Double.NaN, Double.NaN); + } + + @Test + public void testLogGammaNegative() { + testLogGamma(Double.NaN, -1.0); + } + + @Test + public void testLogGammaZero() { + testLogGamma(Double.NaN, 0.0); + } + + @Test + public void testLogGammaPositive() { + testLogGamma(0.6931471805599457, 3.0); + } + + /** + * Reference data for the {@link Gamma#logGamma(double)} function. This data + * was generated with the following Maxima script. + * + *
+     * kill(all);
+     *
+     * fpprec : 64;
+     * gamln(x) := log(gamma(x));
+     * x : append(makelist(bfloat(i / 8), i, 1, 80),
+     *     [0.8b0, 1b2, 1b3, 1b4, 1b5, 1b6, 1b7, 1b8, 1b9, 1b10]);
+     *
+     * for i : 1 while i <= length(x) do
+     *     print("{", float(x[i]), ",", float(gamln(x[i])), "},");
+     * 
+ */ + private static final double[][] LOG_GAMMA_REF = { + { 0.125 , 2.019418357553796 }, + { 0.25 , 1.288022524698077 }, + { 0.375 , .8630739822706475 }, + { 0.5 , .5723649429247001 }, + { 0.625 , .3608294954889402 }, + { 0.75 , .2032809514312954 }, + { 0.875 , .08585870722533433 }, + { 0.890625 , .07353860936979656 }, + { 0.90625 , .06169536624059108 }, + { 0.921875 , .05031670080005688 }, + { 0.9375 , 0.0393909017345823 }, + { 0.953125 , .02890678734595923 }, + { 0.96875 , .01885367233441289 }, + { 0.984375 , .009221337197578781 }, + { 1.0 , 0.0 }, + { 1.015625 , - 0.00881970970573307 }, + { 1.03125 , - .01724677500176807 }, + { 1.046875 , - .02528981394675729 }, + { 1.0625 , - .03295710029357782 }, + { 1.078125 , - .04025658272400143 }, + { 1.09375 , - .04719590272716985 }, + { 1.109375 , - .05378241123619192 }, + { 1.125 , - .06002318412603958 }, + { 1.25 , - .09827183642181316 }, + { 1.375 , - .1177552707410788 }, + { 1.5 , - .1207822376352452 }, + { 1.625 , - .1091741337567954 }, + { 1.75 , - .08440112102048555 }, + { 1.875 , - 0.0476726853991883 }, + { 1.890625 , - .04229320615532515 }, + { 1.90625 , - .03674470657266143 }, + { 1.921875 , - .03102893865389552 }, + { 1.9375 , - .02514761940298887 }, + { 1.953125 , - .01910243184040138 }, + { 1.96875 , - .01289502598016741 }, + { 1.984375 , - .006527019770560387 }, + { 2.0 , 0.0 }, + { 2.015625 , .006684476830232185 }, + { 2.03125 , .01352488366498562 }, + { 2.046875 , .02051972208453692 }, + { 2.0625 , .02766752152285702 }, + { 2.078125 , 0.0349668385135861 }, + { 2.09375 , .04241625596251728 }, + { 2.109375 , .05001438244545164 }, + { 2.125 , .05775985153034387 }, + { 2.25 , .1248717148923966 }, + { 2.375 , .2006984603774558 }, + { 2.5 , .2846828704729192 }, + { 2.625 , .3763336820249054 }, + { 2.75 , .4752146669149371 }, + { 2.875 , .5809359740231859 }, + { 2.890625 , .5946142560817441 }, + { 2.90625 , .6083932548009232 }, + { 2.921875 , .6222723333588501 }, + { 2.9375 , .6362508628423761 }, + { 2.953125 , .6503282221022278 }, + { 2.96875 , .6645037976116387 }, + { 2.984375 , 0.678776983328359 }, + { 3.0 , .6931471805599453 }, + { 3.015625 , .7076137978322324 }, + { 3.03125 , .7221762507608962 }, + { 3.046875 , .7368339619260166 }, + { 3.0625 , 0.751586360749556 }, + { 3.078125 , .7664328833756681 }, + { 3.09375 , .7813729725537568 }, + { 3.109375 , .7964060775242092 }, + { 3.125 , 0.811531653906724 }, + { 3.25 , .9358019311087253 }, + { 3.375 , 1.06569589786406 }, + { 3.5 , 1.200973602347074 }, + { 3.625 , 1.341414578068493 }, + { 3.75 , 1.486815578593417 }, + { 3.875 , 1.6369886482725 }, + { 4.0 , 1.791759469228055 }, + { 4.125 , 1.950965937095089 }, + { 4.25 , 2.114456927450371 }, + { 4.375 , 2.282091222188554 }, + { 4.5 , 2.453736570842442 }, + { 4.625 , 2.62926886637513 }, + { 4.75 , 2.808571418575736 }, + { 4.875 , 2.99153431107781 }, + { 5.0 , 3.178053830347946 }, + { 5.125 , 3.368031956881733 }, + { 5.25 , 3.561375910386697 }, + { 5.375 , 3.757997741998131 }, + { 5.5 , 3.957813967618717 }, + { 5.625 , 4.160745237339519 }, + { 5.75 , 4.366716036622286 }, + { 5.875 , 4.57565441552762 }, + { 6.0 , 4.787491742782046 }, + { 6.125 , 5.002162481906205 }, + { 6.25 , 5.219603986990229 }, + { 6.375 , 5.439756316011858 }, + { 6.5 , 5.662562059857142 }, + { 6.625 , 5.887966185430003 }, + { 6.75 , 6.115915891431546 }, + { 6.875 , 6.346360475557843 }, + { 7.0 , 6.579251212010101 }, + { 7.125 , 6.814541238336996 }, + { 7.25 , 7.05218545073854 }, + { 7.375 , 7.292140407056348 }, + { 7.5 , 7.534364236758733 }, + { 7.625 , 7.778816557302289 }, + { 7.75 , 8.025458396315983 }, + { 7.875 , 8.274252119110479 }, + { 8.0 , 8.525161361065415 }, + { 8.125 , 8.77815096449171 }, + { 8.25 , 9.033186919605123 }, + { 8.375 , 9.290236309282232 }, + { 8.5 , 9.549267257300997 }, + { 8.625 , 9.810248879795765 }, + { 8.75 , 10.07315123968124 }, + { 8.875 , 10.33794530382217 }, + { 9.0 , 10.60460290274525 }, + { 9.125 , 10.87309669270751 }, + { 9.25 , 11.14340011995171 }, + { 9.375 , 11.41548738699336 }, + { 9.5 , 11.68933342079727 }, + { 9.625 , 11.96491384271319 }, + { 9.75 , 12.24220494005076 }, + { 9.875 , 12.52118363918365 }, + { 10.0 , 12.80182748008147 }, + { 0.8 , .1520596783998376 }, + { 100.0 , 359.1342053695754 }, + { 1000.0 , 5905.220423209181 }, + { 10000.0 , 82099.71749644238 }, + { 100000.0 , 1051287.708973657 }, + { 1000000.0 , 1.2815504569147612e+7 }, + { 10000000.0 , 1.511809493694739e+8 }, + { 1.e+8 , 1.7420680661038346e+9 }, + { 1.e+9 , 1.972326582750371e+10 }, + { 1.e+10 , 2.202585092888106e+11 }, + }; + + @Test + public void testLogGamma() { + final int ulps = 3; + for (int i = 0; i < LOG_GAMMA_REF.length; i++) { + final double[] data = LOG_GAMMA_REF[i]; + final double x = data[0]; + final double expected = data[1]; + final double actual = FUNCTION.value(x); + final double tol; + if (expected == 0.0) { + tol = 1E-15; + } else { + tol = ulps * Math.ulp(expected); + } + Assert.assertEquals(Double.toString(x), expected, actual, tol); + } + } + + @Test + public void testLogGammaPrecondition1() { + Assert.assertTrue(Double.isNaN(FUNCTION.value(0.0))); + } + + @Test + public void testLogGammaPrecondition2() { + Assert.assertTrue(Double.isNaN(FUNCTION.value(-1.0))); + } + + private void testLogGamma(double expected, double x) { + double actual = FUNCTION.value(x); + Assert.assertEquals(expected, actual, 10e-15); + } +} http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/0c9f1cde/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/RegularizedGammaTest.java ---------------------------------------------------------------------- diff --git a/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/RegularizedGammaTest.java b/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/RegularizedGammaTest.java new file mode 100644 index 0000000..2d4510f --- /dev/null +++ b/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/RegularizedGammaTest.java @@ -0,0 +1,67 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.apache.commons.numbers.gamma; + +import org.junit.Assert; +import org.junit.Test; + +/** + * Tests for {@link RegularizedGamma}. + */ +public class RegularizedGammaTest { + @Test + public void testRegularizedGammaNanPositive() { + testRegularizedGamma(Double.NaN, Double.NaN, 1.0); + } + + @Test + public void testRegularizedGammaPositiveNan() { + testRegularizedGamma(Double.NaN, 1.0, Double.NaN); + } + + @Test + public void testRegularizedGammaNegativePositive() { + testRegularizedGamma(Double.NaN, -1.5, 1.0); + } + + @Test + public void testRegularizedGammaPositiveNegative() { + testRegularizedGamma(Double.NaN, 1.0, -1.0); + } + + @Test + public void testRegularizedGammaZeroPositive() { + testRegularizedGamma(Double.NaN, 0.0, 1.0); + } + + @Test + public void testRegularizedGammaPositiveZero() { + testRegularizedGamma(0.0, 1.0, 0.0); + } + + @Test + public void testRegularizedGammaPositivePositive() { + testRegularizedGamma(0.632120558828558, 1.0, 1.0); + } + + private void testRegularizedGamma(double expected, double a, double x) { + double actualP = new RegularizedGamma.P().value(a, x); + double actualQ = new RegularizedGamma.Q().value(a, x); + Assert.assertEquals(expected, actualP, 10e-15); + Assert.assertEquals(actualP, 1 - actualQ, 10e-15); + } +} http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/0c9f1cde/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/TrigammaTest.java ---------------------------------------------------------------------- diff --git a/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/TrigammaTest.java b/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/TrigammaTest.java new file mode 100644 index 0000000..50caf0b --- /dev/null +++ b/commons-numbers-gamma/src/test/java/org/apache/commons/numbers/gamma/TrigammaTest.java @@ -0,0 +1,59 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.apache.commons.numbers.gamma; + +import org.junit.Assert; +import org.junit.Test; + +/** + * Tests for {@link Trigamma}. + */ +public class TrigammaTest { + @Test + public void testTrigamma() { + double eps = 1e-8; + // computed using webMathematica. For example, to compute trigamma($i) = Polygamma(1, $i), use + // + // http://functions.wolfram.com/webMathematica/Evaluated.jsp?name=PolyGamma2&plottype=0&vars={%221%22,%22$i%22}&digits=20 + double[] data = { + 1e-4, 1.0000000164469368793e8, + 1e-3, 1.0000016425331958690e6, + 1e-2, 10001.621213528313220, + 1e-1, 101.43329915079275882, + 1, 1.6449340668482264365, + 2, 0.64493406684822643647, + 3, 0.39493406684822643647, + 4, 0.28382295573711532536, + 5, 0.22132295573711532536, + 10, 0.10516633568168574612, + 20, 0.051270822935203119832, + 50, 0.020201333226697125806, + 100, 0.010050166663333571395 + }; + for (int i = data.length - 2; i >= 0; i -= 2) { + Assert.assertEquals(String.format("trigamma %.0f", data[i]), data[i + 1], Trigamma.value(data[i]), eps); + } + } + + @Test + public void testTrigammaNonRealArgs() { + Assert.assertTrue(Double.isNaN(Trigamma.value(Double.NaN))); + Assert.assertTrue(Double.isInfinite(Trigamma.value(Double.POSITIVE_INFINITY))); + Assert.assertTrue(Double.isInfinite(Trigamma.value(Double.NEGATIVE_INFINITY))); + } +} + http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/0c9f1cde/pom.xml ---------------------------------------------------------------------- diff --git a/pom.xml b/pom.xml index a54a095..596828b 100644 --- a/pom.xml +++ b/pom.xml @@ -563,7 +563,7 @@ commons-numbers-primes commons-numbers-quaternion commons-numbers-fraction - + commons-numbers-gamma