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From er...@apache.org
Subject [05/51] [partial] commons-complex git commit: Removed "site-content" directory.
Date Fri, 06 Jan 2017 17:09:45 GMT
http://git-wip-us.apache.org/repos/asf/commons-complex/blob/b3576eeb/site-content/.svn/pristine/06/062b7177791e945e4ad5ddbb095621b511d1f857.svn-base
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-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head><meta http-equiv="content-type" content="text/html; charset=UTF-8" />
-<title>ValueServer xref</title>
-<link type="text/css" rel="stylesheet" href="../../../../../stylesheet.css" />
-</head>
-<body>
-<div id="overview"><a href="../../../../../../apidocs/org/apache/commons/math3/random/ValueServer.html">View Javadoc</a></div><pre>
-<a class="jxr_linenumber" name="L1" href="#L1">1</a>   <em class="jxr_comment">/*</em>
-<a class="jxr_linenumber" name="L2" href="#L2">2</a>   <em class="jxr_comment"> * Licensed to the Apache Software Foundation (ASF) under one or more</em>
-<a class="jxr_linenumber" name="L3" href="#L3">3</a>   <em class="jxr_comment"> * contributor license agreements.  See the NOTICE file distributed with</em>
-<a class="jxr_linenumber" name="L4" href="#L4">4</a>   <em class="jxr_comment"> * this work for additional information regarding copyright ownership.</em>
-<a class="jxr_linenumber" name="L5" href="#L5">5</a>   <em class="jxr_comment"> * The ASF licenses this file to You under the Apache License, Version 2.0</em>
-<a class="jxr_linenumber" name="L6" href="#L6">6</a>   <em class="jxr_comment"> * (the "License"); you may not use this file except in compliance with</em>
-<a class="jxr_linenumber" name="L7" href="#L7">7</a>   <em class="jxr_comment"> * the License.  You may obtain a copy of the License at</em>
-<a class="jxr_linenumber" name="L8" href="#L8">8</a>   <em class="jxr_comment"> *</em>
-<a class="jxr_linenumber" name="L9" href="#L9">9</a>   <em class="jxr_comment"> *      <a href="http://www.apache.org/licenses/LICENSE-2." target="alexandria_uri">http://www.apache.org/licenses/LICENSE-2.</a>0</em>
-<a class="jxr_linenumber" name="L10" href="#L10">10</a>  <em class="jxr_comment"> *</em>
-<a class="jxr_linenumber" name="L11" href="#L11">11</a>  <em class="jxr_comment"> * Unless required by applicable law or agreed to in writing, software</em>
-<a class="jxr_linenumber" name="L12" href="#L12">12</a>  <em class="jxr_comment"> * distributed under the License is distributed on an "AS IS" BASIS,</em>
-<a class="jxr_linenumber" name="L13" href="#L13">13</a>  <em class="jxr_comment"> * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.</em>
-<a class="jxr_linenumber" name="L14" href="#L14">14</a>  <em class="jxr_comment"> * See the License for the specific language governing permissions and</em>
-<a class="jxr_linenumber" name="L15" href="#L15">15</a>  <em class="jxr_comment"> * limitations under the License.</em>
-<a class="jxr_linenumber" name="L16" href="#L16">16</a>  <em class="jxr_comment"> */</em>
-<a class="jxr_linenumber" name="L17" href="#L17">17</a>  
-<a class="jxr_linenumber" name="L18" href="#L18">18</a>  <strong class="jxr_keyword">package</strong> org.apache.commons.math3.random;
-<a class="jxr_linenumber" name="L19" href="#L19">19</a>  <strong class="jxr_keyword">import</strong> java.io.BufferedReader;
-<a class="jxr_linenumber" name="L20" href="#L20">20</a>  <strong class="jxr_keyword">import</strong> java.io.IOException;
-<a class="jxr_linenumber" name="L21" href="#L21">21</a>  <strong class="jxr_keyword">import</strong> java.io.InputStreamReader;
-<a class="jxr_linenumber" name="L22" href="#L22">22</a>  <strong class="jxr_keyword">import</strong> java.net.MalformedURLException;
-<a class="jxr_linenumber" name="L23" href="#L23">23</a>  <strong class="jxr_keyword">import</strong> java.net.URL;
-<a class="jxr_linenumber" name="L24" href="#L24">24</a>  
-<a class="jxr_linenumber" name="L25" href="#L25">25</a>  <strong class="jxr_keyword">import</strong> org.apache.commons.math3.exception.MathIllegalArgumentException;
-<a class="jxr_linenumber" name="L26" href="#L26">26</a>  <strong class="jxr_keyword">import</strong> org.apache.commons.math3.exception.MathIllegalStateException;
-<a class="jxr_linenumber" name="L27" href="#L27">27</a>  <strong class="jxr_keyword">import</strong> org.apache.commons.math3.exception.NullArgumentException;
-<a class="jxr_linenumber" name="L28" href="#L28">28</a>  <strong class="jxr_keyword">import</strong> org.apache.commons.math3.exception.ZeroException;
-<a class="jxr_linenumber" name="L29" href="#L29">29</a>  <strong class="jxr_keyword">import</strong> org.apache.commons.math3.exception.util.LocalizedFormats;
-<a class="jxr_linenumber" name="L30" href="#L30">30</a>  
-<a class="jxr_linenumber" name="L31" href="#L31">31</a>  <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L32" href="#L32">32</a>  <em class="jxr_javadoccomment"> * Generates values for use in simulation applications.</em>
-<a class="jxr_linenumber" name="L33" href="#L33">33</a>  <em class="jxr_javadoccomment"> * &lt;p&gt;</em>
-<a class="jxr_linenumber" name="L34" href="#L34">34</a>  <em class="jxr_javadoccomment"> * How values are generated is determined by the &lt;code&gt;mode&lt;/code&gt;</em>
-<a class="jxr_linenumber" name="L35" href="#L35">35</a>  <em class="jxr_javadoccomment"> * property.&lt;/p&gt;</em>
-<a class="jxr_linenumber" name="L36" href="#L36">36</a>  <em class="jxr_javadoccomment"> * &lt;p&gt;</em>
-<a class="jxr_linenumber" name="L37" href="#L37">37</a>  <em class="jxr_javadoccomment"> * Supported &lt;code&gt;mode&lt;/code&gt; values are: &lt;ul&gt;</em>
-<a class="jxr_linenumber" name="L38" href="#L38">38</a>  <em class="jxr_javadoccomment"> * &lt;li&gt; DIGEST_MODE -- uses an empirical distribution &lt;/li&gt;</em>
-<a class="jxr_linenumber" name="L39" href="#L39">39</a>  <em class="jxr_javadoccomment"> * &lt;li&gt; REPLAY_MODE -- replays data from &lt;code&gt;valuesFileURL&lt;/code&gt;&lt;/li&gt;</em>
-<a class="jxr_linenumber" name="L40" href="#L40">40</a>  <em class="jxr_javadoccomment"> * &lt;li&gt; UNIFORM_MODE -- generates uniformly distributed random values with</em>
-<a class="jxr_linenumber" name="L41" href="#L41">41</a>  <em class="jxr_javadoccomment"> *                      mean = &lt;code&gt;mu&lt;/code&gt; &lt;/li&gt;</em>
-<a class="jxr_linenumber" name="L42" href="#L42">42</a>  <em class="jxr_javadoccomment"> * &lt;li&gt; EXPONENTIAL_MODE -- generates exponentially distributed random values</em>
-<a class="jxr_linenumber" name="L43" href="#L43">43</a>  <em class="jxr_javadoccomment"> *                         with mean = &lt;code&gt;mu&lt;/code&gt;&lt;/li&gt;</em>
-<a class="jxr_linenumber" name="L44" href="#L44">44</a>  <em class="jxr_javadoccomment"> * &lt;li&gt; GAUSSIAN_MODE -- generates Gaussian distributed random values with</em>
-<a class="jxr_linenumber" name="L45" href="#L45">45</a>  <em class="jxr_javadoccomment"> *                       mean = &lt;code&gt;mu&lt;/code&gt; and</em>
-<a class="jxr_linenumber" name="L46" href="#L46">46</a>  <em class="jxr_javadoccomment"> *                       standard deviation = &lt;code&gt;sigma&lt;/code&gt;&lt;/li&gt;</em>
-<a class="jxr_linenumber" name="L47" href="#L47">47</a>  <em class="jxr_javadoccomment"> * &lt;li&gt; CONSTANT_MODE -- returns &lt;code&gt;mu&lt;/code&gt; every time.&lt;/li&gt;&lt;/ul&gt;&lt;/p&gt;</em>
-<a class="jxr_linenumber" name="L48" href="#L48">48</a>  <em class="jxr_javadoccomment"> *</em>
-<a class="jxr_linenumber" name="L49" href="#L49">49</a>  <em class="jxr_javadoccomment"> *</em>
-<a class="jxr_linenumber" name="L50" href="#L50">50</a>  <em class="jxr_javadoccomment"> */</em>
-<a class="jxr_linenumber" name="L51" href="#L51">51</a>  <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">class</strong> <a href="../../../../../org/apache/commons/math3/random/ValueServer.html">ValueServer</a> {
-<a class="jxr_linenumber" name="L52" href="#L52">52</a>  
-<a class="jxr_linenumber" name="L53" href="#L53">53</a>      <em class="jxr_javadoccomment">/** Use empirical distribution.  */</em>
-<a class="jxr_linenumber" name="L54" href="#L54">54</a>      <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">static</strong> <strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">int</strong> DIGEST_MODE = 0;
-<a class="jxr_linenumber" name="L55" href="#L55">55</a>  
-<a class="jxr_linenumber" name="L56" href="#L56">56</a>      <em class="jxr_javadoccomment">/** Replay data from valuesFilePath. */</em>
-<a class="jxr_linenumber" name="L57" href="#L57">57</a>      <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">static</strong> <strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">int</strong> REPLAY_MODE = 1;
-<a class="jxr_linenumber" name="L58" href="#L58">58</a>  
-<a class="jxr_linenumber" name="L59" href="#L59">59</a>      <em class="jxr_javadoccomment">/** Uniform random deviates with mean = &amp;mu;. */</em>
-<a class="jxr_linenumber" name="L60" href="#L60">60</a>      <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">static</strong> <strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">int</strong> UNIFORM_MODE = 2;
-<a class="jxr_linenumber" name="L61" href="#L61">61</a>  
-<a class="jxr_linenumber" name="L62" href="#L62">62</a>      <em class="jxr_javadoccomment">/** Exponential random deviates with mean = &amp;mu;. */</em>
-<a class="jxr_linenumber" name="L63" href="#L63">63</a>      <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">static</strong> <strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">int</strong> EXPONENTIAL_MODE = 3;
-<a class="jxr_linenumber" name="L64" href="#L64">64</a>  
-<a class="jxr_linenumber" name="L65" href="#L65">65</a>      <em class="jxr_javadoccomment">/** Gaussian random deviates with mean = &amp;mu;, std dev = &amp;sigma;. */</em>
-<a class="jxr_linenumber" name="L66" href="#L66">66</a>      <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">static</strong> <strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">int</strong> GAUSSIAN_MODE = 4;
-<a class="jxr_linenumber" name="L67" href="#L67">67</a>  
-<a class="jxr_linenumber" name="L68" href="#L68">68</a>      <em class="jxr_javadoccomment">/** Always return mu */</em>
-<a class="jxr_linenumber" name="L69" href="#L69">69</a>      <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">static</strong> <strong class="jxr_keyword">final</strong> <strong class="jxr_keyword">int</strong> CONSTANT_MODE = 5;
-<a class="jxr_linenumber" name="L70" href="#L70">70</a>  
-<a class="jxr_linenumber" name="L71" href="#L71">71</a>      <em class="jxr_javadoccomment">/** mode determines how values are generated. */</em>
-<a class="jxr_linenumber" name="L72" href="#L72">72</a>      <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">int</strong> mode = 5;
-<a class="jxr_linenumber" name="L73" href="#L73">73</a>  
-<a class="jxr_linenumber" name="L74" href="#L74">74</a>      <em class="jxr_javadoccomment">/** URI to raw data values. */</em>
-<a class="jxr_linenumber" name="L75" href="#L75">75</a>      <strong class="jxr_keyword">private</strong> URL valuesFileURL = <strong class="jxr_keyword">null</strong>;
-<a class="jxr_linenumber" name="L76" href="#L76">76</a>  
-<a class="jxr_linenumber" name="L77" href="#L77">77</a>      <em class="jxr_javadoccomment">/** Mean for use with non-data-driven modes. */</em>
-<a class="jxr_linenumber" name="L78" href="#L78">78</a>      <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">double</strong> mu = 0.0;
-<a class="jxr_linenumber" name="L79" href="#L79">79</a>  
-<a class="jxr_linenumber" name="L80" href="#L80">80</a>      <em class="jxr_javadoccomment">/** Standard deviation for use with GAUSSIAN_MODE. */</em>
-<a class="jxr_linenumber" name="L81" href="#L81">81</a>      <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">double</strong> sigma = 0.0;
-<a class="jxr_linenumber" name="L82" href="#L82">82</a>  
-<a class="jxr_linenumber" name="L83" href="#L83">83</a>      <em class="jxr_javadoccomment">/** Empirical probability distribution for use with DIGEST_MODE. */</em>
-<a class="jxr_linenumber" name="L84" href="#L84">84</a>      <strong class="jxr_keyword">private</strong> <a href="../../../../../org/apache/commons/math3/random/EmpiricalDistribution.html">EmpiricalDistribution</a> empiricalDistribution = <strong class="jxr_keyword">null</strong>;
-<a class="jxr_linenumber" name="L85" href="#L85">85</a>  
-<a class="jxr_linenumber" name="L86" href="#L86">86</a>      <em class="jxr_javadoccomment">/** File pointer for REPLAY_MODE. */</em>
-<a class="jxr_linenumber" name="L87" href="#L87">87</a>      <strong class="jxr_keyword">private</strong> BufferedReader filePointer = <strong class="jxr_keyword">null</strong>;
-<a class="jxr_linenumber" name="L88" href="#L88">88</a>  
-<a class="jxr_linenumber" name="L89" href="#L89">89</a>      <em class="jxr_javadoccomment">/** RandomDataImpl to use for random data generation. */</em>
-<a class="jxr_linenumber" name="L90" href="#L90">90</a>      <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">final</strong> <a href="../../../../../org/apache/commons/math3/random/RandomDataGenerator.html">RandomDataGenerator</a> randomData;
-<a class="jxr_linenumber" name="L91" href="#L91">91</a>  
-<a class="jxr_linenumber" name="L92" href="#L92">92</a>      <em class="jxr_comment">// Data generation modes ======================================</em>
-<a class="jxr_linenumber" name="L93" href="#L93">93</a>  
-<a class="jxr_linenumber" name="L94" href="#L94">94</a>      <em class="jxr_javadoccomment">/** Creates new ValueServer */</em>
-<a class="jxr_linenumber" name="L95" href="#L95">95</a>      <strong class="jxr_keyword">public</strong> <a href="../../../../../org/apache/commons/math3/random/ValueServer.html">ValueServer</a>() {
-<a class="jxr_linenumber" name="L96" href="#L96">96</a>          randomData = <strong class="jxr_keyword">new</strong> <a href="../../../../../org/apache/commons/math3/random/RandomDataGenerator.html">RandomDataGenerator</a>();
-<a class="jxr_linenumber" name="L97" href="#L97">97</a>      }
-<a class="jxr_linenumber" name="L98" href="#L98">98</a>  
-<a class="jxr_linenumber" name="L99" href="#L99">99</a>      <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L100" href="#L100">100</a> <em class="jxr_javadoccomment">     * Construct a ValueServer instance using a RandomDataImpl as its source</em>
-<a class="jxr_linenumber" name="L101" href="#L101">101</a> <em class="jxr_javadoccomment">     * of random data.</em>
-<a class="jxr_linenumber" name="L102" href="#L102">102</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L103" href="#L103">103</a> <em class="jxr_javadoccomment">     * @param randomData the RandomDataImpl instance used to source random data</em>
-<a class="jxr_linenumber" name="L104" href="#L104">104</a> <em class="jxr_javadoccomment">     * @since 3.0</em>
-<a class="jxr_linenumber" name="L105" href="#L105">105</a> <em class="jxr_javadoccomment">     * @deprecated use {@link #ValueServer(RandomGenerator)}</em>
-<a class="jxr_linenumber" name="L106" href="#L106">106</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L107" href="#L107">107</a>     @Deprecated
-<a class="jxr_linenumber" name="L108" href="#L108">108</a>     <strong class="jxr_keyword">public</strong> <a href="../../../../../org/apache/commons/math3/random/ValueServer.html">ValueServer</a>(<a href="../../../../../org/apache/commons/math3/random/RandomDataImpl.html">RandomDataImpl</a> randomData) {
-<a class="jxr_linenumber" name="L109" href="#L109">109</a>         <strong class="jxr_keyword">this</strong>.randomData = randomData.getDelegate();
-<a class="jxr_linenumber" name="L110" href="#L110">110</a>     }
-<a class="jxr_linenumber" name="L111" href="#L111">111</a> 
-<a class="jxr_linenumber" name="L112" href="#L112">112</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L113" href="#L113">113</a> <em class="jxr_javadoccomment">     * Construct a ValueServer instance using a RandomGenerator as its source</em>
-<a class="jxr_linenumber" name="L114" href="#L114">114</a> <em class="jxr_javadoccomment">     * of random data.</em>
-<a class="jxr_linenumber" name="L115" href="#L115">115</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L116" href="#L116">116</a> <em class="jxr_javadoccomment">     * @since 3.1</em>
-<a class="jxr_linenumber" name="L117" href="#L117">117</a> <em class="jxr_javadoccomment">     * @param generator source of random data</em>
-<a class="jxr_linenumber" name="L118" href="#L118">118</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L119" href="#L119">119</a>     <strong class="jxr_keyword">public</strong> <a href="../../../../../org/apache/commons/math3/random/ValueServer.html">ValueServer</a>(<a href="../../../../../org/apache/commons/math3/random/RandomGenerator.html">RandomGenerator</a> generator) {
-<a class="jxr_linenumber" name="L120" href="#L120">120</a>         <strong class="jxr_keyword">this</strong>.randomData = <strong class="jxr_keyword">new</strong> <a href="../../../../../org/apache/commons/math3/random/RandomDataGenerator.html">RandomDataGenerator</a>(generator);
-<a class="jxr_linenumber" name="L121" href="#L121">121</a>     }
-<a class="jxr_linenumber" name="L122" href="#L122">122</a> 
-<a class="jxr_linenumber" name="L123" href="#L123">123</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L124" href="#L124">124</a> <em class="jxr_javadoccomment">     * Returns the next generated value, generated according</em>
-<a class="jxr_linenumber" name="L125" href="#L125">125</a> <em class="jxr_javadoccomment">     * to the mode value (see MODE constants).</em>
-<a class="jxr_linenumber" name="L126" href="#L126">126</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L127" href="#L127">127</a> <em class="jxr_javadoccomment">     * @return generated value</em>
-<a class="jxr_linenumber" name="L128" href="#L128">128</a> <em class="jxr_javadoccomment">     * @throws IOException in REPLAY_MODE if a file I/O error occurs</em>
-<a class="jxr_linenumber" name="L129" href="#L129">129</a> <em class="jxr_javadoccomment">     * @throws MathIllegalStateException if mode is not recognized</em>
-<a class="jxr_linenumber" name="L130" href="#L130">130</a> <em class="jxr_javadoccomment">     * @throws MathIllegalArgumentException if the underlying random generator thwrows one</em>
-<a class="jxr_linenumber" name="L131" href="#L131">131</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L132" href="#L132">132</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">double</strong> getNext() <strong class="jxr_keyword">throws</strong> IOException, MathIllegalStateException, MathIllegalArgumentException {
-<a class="jxr_linenumber" name="L133" href="#L133">133</a>         <strong class="jxr_keyword">switch</strong> (mode) {
-<a class="jxr_linenumber" name="L134" href="#L134">134</a>             <strong class="jxr_keyword">case</strong> DIGEST_MODE: <strong class="jxr_keyword">return</strong> getNextDigest();
-<a class="jxr_linenumber" name="L135" href="#L135">135</a>             <strong class="jxr_keyword">case</strong> REPLAY_MODE: <strong class="jxr_keyword">return</strong> getNextReplay();
-<a class="jxr_linenumber" name="L136" href="#L136">136</a>             <strong class="jxr_keyword">case</strong> UNIFORM_MODE: <strong class="jxr_keyword">return</strong> getNextUniform();
-<a class="jxr_linenumber" name="L137" href="#L137">137</a>             <strong class="jxr_keyword">case</strong> EXPONENTIAL_MODE: <strong class="jxr_keyword">return</strong> getNextExponential();
-<a class="jxr_linenumber" name="L138" href="#L138">138</a>             <strong class="jxr_keyword">case</strong> GAUSSIAN_MODE: <strong class="jxr_keyword">return</strong> getNextGaussian();
-<a class="jxr_linenumber" name="L139" href="#L139">139</a>             <strong class="jxr_keyword">case</strong> CONSTANT_MODE: <strong class="jxr_keyword">return</strong> mu;
-<a class="jxr_linenumber" name="L140" href="#L140">140</a>             <strong class="jxr_keyword">default</strong>: <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> <a href="../../../../../org/apache/commons/math3/exception/MathIllegalStateException.html">MathIllegalStateException</a>(
-<a class="jxr_linenumber" name="L141" href="#L141">141</a>                     LocalizedFormats.UNKNOWN_MODE,
-<a class="jxr_linenumber" name="L142" href="#L142">142</a>                     mode,
-<a class="jxr_linenumber" name="L143" href="#L143">143</a>                     <span class="jxr_string">"DIGEST_MODE"</span>,   DIGEST_MODE,   <span class="jxr_string">"REPLAY_MODE"</span>,      REPLAY_MODE,
-<a class="jxr_linenumber" name="L144" href="#L144">144</a>                     <span class="jxr_string">"UNIFORM_MODE"</span>,  UNIFORM_MODE,  <span class="jxr_string">"EXPONENTIAL_MODE"</span>, EXPONENTIAL_MODE,
-<a class="jxr_linenumber" name="L145" href="#L145">145</a>                     <span class="jxr_string">"GAUSSIAN_MODE"</span>, GAUSSIAN_MODE, <span class="jxr_string">"CONSTANT_MODE"</span>,    CONSTANT_MODE);
-<a class="jxr_linenumber" name="L146" href="#L146">146</a>         }
-<a class="jxr_linenumber" name="L147" href="#L147">147</a>     }
-<a class="jxr_linenumber" name="L148" href="#L148">148</a> 
-<a class="jxr_linenumber" name="L149" href="#L149">149</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L150" href="#L150">150</a> <em class="jxr_javadoccomment">     * Fills the input array with values generated using getNext() repeatedly.</em>
-<a class="jxr_linenumber" name="L151" href="#L151">151</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L152" href="#L152">152</a> <em class="jxr_javadoccomment">     * @param values array to be filled</em>
-<a class="jxr_linenumber" name="L153" href="#L153">153</a> <em class="jxr_javadoccomment">     * @throws IOException in REPLAY_MODE if a file I/O error occurs</em>
-<a class="jxr_linenumber" name="L154" href="#L154">154</a> <em class="jxr_javadoccomment">     * @throws MathIllegalStateException if mode is not recognized</em>
-<a class="jxr_linenumber" name="L155" href="#L155">155</a> <em class="jxr_javadoccomment">     * @throws MathIllegalArgumentException if the underlying random generator thwrows one</em>
-<a class="jxr_linenumber" name="L156" href="#L156">156</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L157" href="#L157">157</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> fill(<strong class="jxr_keyword">double</strong>[] values)
-<a class="jxr_linenumber" name="L158" href="#L158">158</a>         <strong class="jxr_keyword">throws</strong> IOException, MathIllegalStateException, <a href="../../../../../org/apache/commons/math3/exception/MathIllegalArgumentException.html">MathIllegalArgumentException</a> {
-<a class="jxr_linenumber" name="L159" href="#L159">159</a>         <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0; i &lt; values.length; i++) {
-<a class="jxr_linenumber" name="L160" href="#L160">160</a>             values[i] = getNext();
-<a class="jxr_linenumber" name="L161" href="#L161">161</a>         }
-<a class="jxr_linenumber" name="L162" href="#L162">162</a>     }
-<a class="jxr_linenumber" name="L163" href="#L163">163</a> 
-<a class="jxr_linenumber" name="L164" href="#L164">164</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L165" href="#L165">165</a> <em class="jxr_javadoccomment">     * Returns an array of length &lt;code&gt;length&lt;/code&gt; with values generated</em>
-<a class="jxr_linenumber" name="L166" href="#L166">166</a> <em class="jxr_javadoccomment">     * using getNext() repeatedly.</em>
-<a class="jxr_linenumber" name="L167" href="#L167">167</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L168" href="#L168">168</a> <em class="jxr_javadoccomment">     * @param length length of output array</em>
-<a class="jxr_linenumber" name="L169" href="#L169">169</a> <em class="jxr_javadoccomment">     * @return array of generated values</em>
-<a class="jxr_linenumber" name="L170" href="#L170">170</a> <em class="jxr_javadoccomment">     * @throws IOException in REPLAY_MODE if a file I/O error occurs</em>
-<a class="jxr_linenumber" name="L171" href="#L171">171</a> <em class="jxr_javadoccomment">     * @throws MathIllegalStateException if mode is not recognized</em>
-<a class="jxr_linenumber" name="L172" href="#L172">172</a> <em class="jxr_javadoccomment">     * @throws MathIllegalArgumentException if the underlying random generator thwrows one</em>
-<a class="jxr_linenumber" name="L173" href="#L173">173</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L174" href="#L174">174</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">double</strong>[] fill(<strong class="jxr_keyword">int</strong> length)
-<a class="jxr_linenumber" name="L175" href="#L175">175</a>         <strong class="jxr_keyword">throws</strong> IOException, MathIllegalStateException, <a href="../../../../../org/apache/commons/math3/exception/MathIllegalArgumentException.html">MathIllegalArgumentException</a> {
-<a class="jxr_linenumber" name="L176" href="#L176">176</a>         <strong class="jxr_keyword">double</strong>[] out = <strong class="jxr_keyword">new</strong> <strong class="jxr_keyword">double</strong>[length];
-<a class="jxr_linenumber" name="L177" href="#L177">177</a>         <strong class="jxr_keyword">for</strong> (<strong class="jxr_keyword">int</strong> i = 0; i &lt; length; i++) {
-<a class="jxr_linenumber" name="L178" href="#L178">178</a>             out[i] = getNext();
-<a class="jxr_linenumber" name="L179" href="#L179">179</a>         }
-<a class="jxr_linenumber" name="L180" href="#L180">180</a>         <strong class="jxr_keyword">return</strong> out;
-<a class="jxr_linenumber" name="L181" href="#L181">181</a>     }
-<a class="jxr_linenumber" name="L182" href="#L182">182</a> 
-<a class="jxr_linenumber" name="L183" href="#L183">183</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L184" href="#L184">184</a> <em class="jxr_javadoccomment">     * Computes the empirical distribution using values from the file</em>
-<a class="jxr_linenumber" name="L185" href="#L185">185</a> <em class="jxr_javadoccomment">     * in &lt;code&gt;valuesFileURL&lt;/code&gt;, using the default number of bins.</em>
-<a class="jxr_linenumber" name="L186" href="#L186">186</a> <em class="jxr_javadoccomment">     * &lt;p&gt;</em>
-<a class="jxr_linenumber" name="L187" href="#L187">187</a> <em class="jxr_javadoccomment">     * &lt;code&gt;valuesFileURL&lt;/code&gt; must exist and be</em>
-<a class="jxr_linenumber" name="L188" href="#L188">188</a> <em class="jxr_javadoccomment">     * readable by *this at runtime.&lt;/p&gt;</em>
-<a class="jxr_linenumber" name="L189" href="#L189">189</a> <em class="jxr_javadoccomment">     * &lt;p&gt;</em>
-<a class="jxr_linenumber" name="L190" href="#L190">190</a> <em class="jxr_javadoccomment">     * This method must be called before using &lt;code&gt;getNext()&lt;/code&gt;</em>
-<a class="jxr_linenumber" name="L191" href="#L191">191</a> <em class="jxr_javadoccomment">     * with &lt;code&gt;mode = DIGEST_MODE&lt;/code&gt;&lt;/p&gt;</em>
-<a class="jxr_linenumber" name="L192" href="#L192">192</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L193" href="#L193">193</a> <em class="jxr_javadoccomment">     * @throws IOException if an I/O error occurs reading the input file</em>
-<a class="jxr_linenumber" name="L194" href="#L194">194</a> <em class="jxr_javadoccomment">     * @throws NullArgumentException if the {@code valuesFileURL} has not been set</em>
-<a class="jxr_linenumber" name="L195" href="#L195">195</a> <em class="jxr_javadoccomment">     * @throws ZeroException if URL contains no data</em>
-<a class="jxr_linenumber" name="L196" href="#L196">196</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L197" href="#L197">197</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> computeDistribution() <strong class="jxr_keyword">throws</strong> IOException, ZeroException, NullArgumentException {
-<a class="jxr_linenumber" name="L198" href="#L198">198</a>         computeDistribution(EmpiricalDistribution.DEFAULT_BIN_COUNT);
-<a class="jxr_linenumber" name="L199" href="#L199">199</a>     }
-<a class="jxr_linenumber" name="L200" href="#L200">200</a> 
-<a class="jxr_linenumber" name="L201" href="#L201">201</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L202" href="#L202">202</a> <em class="jxr_javadoccomment">     * Computes the empirical distribution using values from the file</em>
-<a class="jxr_linenumber" name="L203" href="#L203">203</a> <em class="jxr_javadoccomment">     * in &lt;code&gt;valuesFileURL&lt;/code&gt; and &lt;code&gt;binCount&lt;/code&gt; bins.</em>
-<a class="jxr_linenumber" name="L204" href="#L204">204</a> <em class="jxr_javadoccomment">     * &lt;p&gt;</em>
-<a class="jxr_linenumber" name="L205" href="#L205">205</a> <em class="jxr_javadoccomment">     * &lt;code&gt;valuesFileURL&lt;/code&gt; must exist and be readable by this process</em>
-<a class="jxr_linenumber" name="L206" href="#L206">206</a> <em class="jxr_javadoccomment">     * at runtime.&lt;/p&gt;</em>
-<a class="jxr_linenumber" name="L207" href="#L207">207</a> <em class="jxr_javadoccomment">     * &lt;p&gt;</em>
-<a class="jxr_linenumber" name="L208" href="#L208">208</a> <em class="jxr_javadoccomment">     * This method must be called before using &lt;code&gt;getNext()&lt;/code&gt;</em>
-<a class="jxr_linenumber" name="L209" href="#L209">209</a> <em class="jxr_javadoccomment">     * with &lt;code&gt;mode = DIGEST_MODE&lt;/code&gt;&lt;/p&gt;</em>
-<a class="jxr_linenumber" name="L210" href="#L210">210</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L211" href="#L211">211</a> <em class="jxr_javadoccomment">     * @param binCount the number of bins used in computing the empirical</em>
-<a class="jxr_linenumber" name="L212" href="#L212">212</a> <em class="jxr_javadoccomment">     * distribution</em>
-<a class="jxr_linenumber" name="L213" href="#L213">213</a> <em class="jxr_javadoccomment">     * @throws NullArgumentException if the {@code valuesFileURL} has not been set</em>
-<a class="jxr_linenumber" name="L214" href="#L214">214</a> <em class="jxr_javadoccomment">     * @throws IOException if an error occurs reading the input file</em>
-<a class="jxr_linenumber" name="L215" href="#L215">215</a> <em class="jxr_javadoccomment">     * @throws ZeroException if URL contains no data</em>
-<a class="jxr_linenumber" name="L216" href="#L216">216</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L217" href="#L217">217</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> computeDistribution(<strong class="jxr_keyword">int</strong> binCount) <strong class="jxr_keyword">throws</strong> NullArgumentException, IOException, ZeroException {
-<a class="jxr_linenumber" name="L218" href="#L218">218</a>         empiricalDistribution = <strong class="jxr_keyword">new</strong> <a href="../../../../../org/apache/commons/math3/random/EmpiricalDistribution.html">EmpiricalDistribution</a>(binCount, randomData.getRandomGenerator());
-<a class="jxr_linenumber" name="L219" href="#L219">219</a>         empiricalDistribution.load(valuesFileURL);
-<a class="jxr_linenumber" name="L220" href="#L220">220</a>         mu = empiricalDistribution.getSampleStats().getMean();
-<a class="jxr_linenumber" name="L221" href="#L221">221</a>         sigma = empiricalDistribution.getSampleStats().getStandardDeviation();
-<a class="jxr_linenumber" name="L222" href="#L222">222</a>     }
-<a class="jxr_linenumber" name="L223" href="#L223">223</a> 
-<a class="jxr_linenumber" name="L224" href="#L224">224</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L225" href="#L225">225</a> <em class="jxr_javadoccomment">     * Returns the data generation mode. See {@link ValueServer the class javadoc}</em>
-<a class="jxr_linenumber" name="L226" href="#L226">226</a> <em class="jxr_javadoccomment">     * for description of the valid values of this property.</em>
-<a class="jxr_linenumber" name="L227" href="#L227">227</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L228" href="#L228">228</a> <em class="jxr_javadoccomment">     * @return Value of property mode.</em>
-<a class="jxr_linenumber" name="L229" href="#L229">229</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L230" href="#L230">230</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">int</strong> getMode() {
-<a class="jxr_linenumber" name="L231" href="#L231">231</a>         <strong class="jxr_keyword">return</strong> mode;
-<a class="jxr_linenumber" name="L232" href="#L232">232</a>     }
-<a class="jxr_linenumber" name="L233" href="#L233">233</a> 
-<a class="jxr_linenumber" name="L234" href="#L234">234</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L235" href="#L235">235</a> <em class="jxr_javadoccomment">     * Sets the data generation mode.</em>
-<a class="jxr_linenumber" name="L236" href="#L236">236</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L237" href="#L237">237</a> <em class="jxr_javadoccomment">     * @param mode New value of the data generation mode.</em>
-<a class="jxr_linenumber" name="L238" href="#L238">238</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L239" href="#L239">239</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> setMode(<strong class="jxr_keyword">int</strong> mode) {
-<a class="jxr_linenumber" name="L240" href="#L240">240</a>         <strong class="jxr_keyword">this</strong>.mode = mode;
-<a class="jxr_linenumber" name="L241" href="#L241">241</a>     }
-<a class="jxr_linenumber" name="L242" href="#L242">242</a> 
-<a class="jxr_linenumber" name="L243" href="#L243">243</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L244" href="#L244">244</a> <em class="jxr_javadoccomment">     * Returns the URL for the file used to build the empirical distribution</em>
-<a class="jxr_linenumber" name="L245" href="#L245">245</a> <em class="jxr_javadoccomment">     * when using {@link #DIGEST_MODE}.</em>
-<a class="jxr_linenumber" name="L246" href="#L246">246</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L247" href="#L247">247</a> <em class="jxr_javadoccomment">     * @return Values file URL.</em>
-<a class="jxr_linenumber" name="L248" href="#L248">248</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L249" href="#L249">249</a>     <strong class="jxr_keyword">public</strong> URL getValuesFileURL() {
-<a class="jxr_linenumber" name="L250" href="#L250">250</a>         <strong class="jxr_keyword">return</strong> valuesFileURL;
-<a class="jxr_linenumber" name="L251" href="#L251">251</a>     }
-<a class="jxr_linenumber" name="L252" href="#L252">252</a> 
-<a class="jxr_linenumber" name="L253" href="#L253">253</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L254" href="#L254">254</a> <em class="jxr_javadoccomment">     * Sets the {@link #getValuesFileURL() values file URL} using a string</em>
-<a class="jxr_linenumber" name="L255" href="#L255">255</a> <em class="jxr_javadoccomment">     * URL representation.</em>
-<a class="jxr_linenumber" name="L256" href="#L256">256</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L257" href="#L257">257</a> <em class="jxr_javadoccomment">     * @param url String representation for new valuesFileURL.</em>
-<a class="jxr_linenumber" name="L258" href="#L258">258</a> <em class="jxr_javadoccomment">     * @throws MalformedURLException if url is not well formed</em>
-<a class="jxr_linenumber" name="L259" href="#L259">259</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L260" href="#L260">260</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> setValuesFileURL(String url) <strong class="jxr_keyword">throws</strong> MalformedURLException {
-<a class="jxr_linenumber" name="L261" href="#L261">261</a>         <strong class="jxr_keyword">this</strong>.valuesFileURL = <strong class="jxr_keyword">new</strong> URL(url);
-<a class="jxr_linenumber" name="L262" href="#L262">262</a>     }
-<a class="jxr_linenumber" name="L263" href="#L263">263</a> 
-<a class="jxr_linenumber" name="L264" href="#L264">264</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L265" href="#L265">265</a> <em class="jxr_javadoccomment">     * Sets the the {@link #getValuesFileURL() values file URL}.</em>
-<a class="jxr_linenumber" name="L266" href="#L266">266</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L267" href="#L267">267</a> <em class="jxr_javadoccomment">     * &lt;p&gt;The values file &lt;i&gt;must&lt;/i&gt; be an ASCII text file containing one</em>
-<a class="jxr_linenumber" name="L268" href="#L268">268</a> <em class="jxr_javadoccomment">     * valid numeric entry per line.&lt;/p&gt;</em>
-<a class="jxr_linenumber" name="L269" href="#L269">269</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L270" href="#L270">270</a> <em class="jxr_javadoccomment">     * @param url URL of the values file.</em>
-<a class="jxr_linenumber" name="L271" href="#L271">271</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L272" href="#L272">272</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> setValuesFileURL(URL url) {
-<a class="jxr_linenumber" name="L273" href="#L273">273</a>         <strong class="jxr_keyword">this</strong>.valuesFileURL = url;
-<a class="jxr_linenumber" name="L274" href="#L274">274</a>     }
-<a class="jxr_linenumber" name="L275" href="#L275">275</a> 
-<a class="jxr_linenumber" name="L276" href="#L276">276</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L277" href="#L277">277</a> <em class="jxr_javadoccomment">     * Returns the {@link EmpiricalDistribution} used when operating in {@value #DIGEST_MODE}.</em>
-<a class="jxr_linenumber" name="L278" href="#L278">278</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L279" href="#L279">279</a> <em class="jxr_javadoccomment">     * @return EmpircalDistribution built by {@link #computeDistribution()}</em>
-<a class="jxr_linenumber" name="L280" href="#L280">280</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L281" href="#L281">281</a>     <strong class="jxr_keyword">public</strong> <a href="../../../../../org/apache/commons/math3/random/EmpiricalDistribution.html">EmpiricalDistribution</a> getEmpiricalDistribution() {
-<a class="jxr_linenumber" name="L282" href="#L282">282</a>         <strong class="jxr_keyword">return</strong> empiricalDistribution;
-<a class="jxr_linenumber" name="L283" href="#L283">283</a>     }
-<a class="jxr_linenumber" name="L284" href="#L284">284</a> 
-<a class="jxr_linenumber" name="L285" href="#L285">285</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L286" href="#L286">286</a> <em class="jxr_javadoccomment">     * Resets REPLAY_MODE file pointer to the beginning of the &lt;code&gt;valuesFileURL&lt;/code&gt;.</em>
-<a class="jxr_linenumber" name="L287" href="#L287">287</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L288" href="#L288">288</a> <em class="jxr_javadoccomment">     * @throws IOException if an error occurs opening the file</em>
-<a class="jxr_linenumber" name="L289" href="#L289">289</a> <em class="jxr_javadoccomment">     * @throws NullPointerException if the {@code valuesFileURL} has not been set.</em>
-<a class="jxr_linenumber" name="L290" href="#L290">290</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L291" href="#L291">291</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> resetReplayFile() <strong class="jxr_keyword">throws</strong> IOException {
-<a class="jxr_linenumber" name="L292" href="#L292">292</a>         <strong class="jxr_keyword">if</strong> (filePointer != <strong class="jxr_keyword">null</strong>) {
-<a class="jxr_linenumber" name="L293" href="#L293">293</a>             <strong class="jxr_keyword">try</strong> {
-<a class="jxr_linenumber" name="L294" href="#L294">294</a>                 filePointer.close();
-<a class="jxr_linenumber" name="L295" href="#L295">295</a>                 filePointer = <strong class="jxr_keyword">null</strong>;
-<a class="jxr_linenumber" name="L296" href="#L296">296</a>             } <strong class="jxr_keyword">catch</strong> (IOException ex) { <em class="jxr_comment">//NOPMD</em>
-<a class="jxr_linenumber" name="L297" href="#L297">297</a>                 <em class="jxr_comment">// ignore</em>
-<a class="jxr_linenumber" name="L298" href="#L298">298</a>             }
-<a class="jxr_linenumber" name="L299" href="#L299">299</a>         }
-<a class="jxr_linenumber" name="L300" href="#L300">300</a>         filePointer = <strong class="jxr_keyword">new</strong> BufferedReader(<strong class="jxr_keyword">new</strong> InputStreamReader(valuesFileURL.openStream(), <span class="jxr_string">"UTF-8"</span>));
-<a class="jxr_linenumber" name="L301" href="#L301">301</a>     }
-<a class="jxr_linenumber" name="L302" href="#L302">302</a> 
-<a class="jxr_linenumber" name="L303" href="#L303">303</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L304" href="#L304">304</a> <em class="jxr_javadoccomment">     * Closes {@code valuesFileURL} after use in REPLAY_MODE.</em>
-<a class="jxr_linenumber" name="L305" href="#L305">305</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L306" href="#L306">306</a> <em class="jxr_javadoccomment">     * @throws IOException if an error occurs closing the file</em>
-<a class="jxr_linenumber" name="L307" href="#L307">307</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L308" href="#L308">308</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> closeReplayFile() <strong class="jxr_keyword">throws</strong> IOException {
-<a class="jxr_linenumber" name="L309" href="#L309">309</a>         <strong class="jxr_keyword">if</strong> (filePointer != <strong class="jxr_keyword">null</strong>) {
-<a class="jxr_linenumber" name="L310" href="#L310">310</a>             filePointer.close();
-<a class="jxr_linenumber" name="L311" href="#L311">311</a>             filePointer = <strong class="jxr_keyword">null</strong>;
-<a class="jxr_linenumber" name="L312" href="#L312">312</a>         }
-<a class="jxr_linenumber" name="L313" href="#L313">313</a>     }
-<a class="jxr_linenumber" name="L314" href="#L314">314</a> 
-<a class="jxr_linenumber" name="L315" href="#L315">315</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L316" href="#L316">316</a> <em class="jxr_javadoccomment">     * Returns the mean used when operating in {@link #GAUSSIAN_MODE}, {@link #EXPONENTIAL_MODE}</em>
-<a class="jxr_linenumber" name="L317" href="#L317">317</a> <em class="jxr_javadoccomment">     * or {@link #UNIFORM_MODE}.  When operating in {@link #CONSTANT_MODE}, this is the constant</em>
-<a class="jxr_linenumber" name="L318" href="#L318">318</a> <em class="jxr_javadoccomment">     * value always returned.  Calling {@link #computeDistribution()} sets this value to the</em>
-<a class="jxr_linenumber" name="L319" href="#L319">319</a> <em class="jxr_javadoccomment">     * overall mean of the values in the {@link #getValuesFileURL() values file}.</em>
-<a class="jxr_linenumber" name="L320" href="#L320">320</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L321" href="#L321">321</a> <em class="jxr_javadoccomment">     * @return Mean used in data generation.</em>
-<a class="jxr_linenumber" name="L322" href="#L322">322</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L323" href="#L323">323</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">double</strong> getMu() {
-<a class="jxr_linenumber" name="L324" href="#L324">324</a>         <strong class="jxr_keyword">return</strong> mu;
-<a class="jxr_linenumber" name="L325" href="#L325">325</a>     }
-<a class="jxr_linenumber" name="L326" href="#L326">326</a> 
-<a class="jxr_linenumber" name="L327" href="#L327">327</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L328" href="#L328">328</a> <em class="jxr_javadoccomment">     * Sets the {@link #getMu() mean} used in data generation.  Note that calling this method</em>
-<a class="jxr_linenumber" name="L329" href="#L329">329</a> <em class="jxr_javadoccomment">     * after {@link #computeDistribution()} has been called will have no effect on data</em>
-<a class="jxr_linenumber" name="L330" href="#L330">330</a> <em class="jxr_javadoccomment">     * generated in {@link #DIGEST_MODE}.</em>
-<a class="jxr_linenumber" name="L331" href="#L331">331</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L332" href="#L332">332</a> <em class="jxr_javadoccomment">     * @param mu new Mean value.</em>
-<a class="jxr_linenumber" name="L333" href="#L333">333</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L334" href="#L334">334</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> setMu(<strong class="jxr_keyword">double</strong> mu) {
-<a class="jxr_linenumber" name="L335" href="#L335">335</a>         <strong class="jxr_keyword">this</strong>.mu = mu;
-<a class="jxr_linenumber" name="L336" href="#L336">336</a>     }
-<a class="jxr_linenumber" name="L337" href="#L337">337</a> 
-<a class="jxr_linenumber" name="L338" href="#L338">338</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L339" href="#L339">339</a> <em class="jxr_javadoccomment">     * Returns the standard deviation used when operating in {@link #GAUSSIAN_MODE}.</em>
-<a class="jxr_linenumber" name="L340" href="#L340">340</a> <em class="jxr_javadoccomment">     * Calling {@link #computeDistribution()} sets this value to the overall standard</em>
-<a class="jxr_linenumber" name="L341" href="#L341">341</a> <em class="jxr_javadoccomment">     * deviation of the values in the {@link #getValuesFileURL() values file}.  This</em>
-<a class="jxr_linenumber" name="L342" href="#L342">342</a> <em class="jxr_javadoccomment">     * property has no effect when the data generation mode is not</em>
-<a class="jxr_linenumber" name="L343" href="#L343">343</a> <em class="jxr_javadoccomment">     * {@link #GAUSSIAN_MODE}.</em>
-<a class="jxr_linenumber" name="L344" href="#L344">344</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L345" href="#L345">345</a> <em class="jxr_javadoccomment">     * @return Standard deviation used when operating in {@link #GAUSSIAN_MODE}.</em>
-<a class="jxr_linenumber" name="L346" href="#L346">346</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L347" href="#L347">347</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">double</strong> getSigma() {
-<a class="jxr_linenumber" name="L348" href="#L348">348</a>         <strong class="jxr_keyword">return</strong> sigma;
-<a class="jxr_linenumber" name="L349" href="#L349">349</a>     }
-<a class="jxr_linenumber" name="L350" href="#L350">350</a> 
-<a class="jxr_linenumber" name="L351" href="#L351">351</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L352" href="#L352">352</a> <em class="jxr_javadoccomment">     * Sets the {@link #getSigma() standard deviation} used in {@link #GAUSSIAN_MODE}.</em>
-<a class="jxr_linenumber" name="L353" href="#L353">353</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L354" href="#L354">354</a> <em class="jxr_javadoccomment">     * @param sigma New standard deviation.</em>
-<a class="jxr_linenumber" name="L355" href="#L355">355</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L356" href="#L356">356</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> setSigma(<strong class="jxr_keyword">double</strong> sigma) {
-<a class="jxr_linenumber" name="L357" href="#L357">357</a>         <strong class="jxr_keyword">this</strong>.sigma = sigma;
-<a class="jxr_linenumber" name="L358" href="#L358">358</a>     }
-<a class="jxr_linenumber" name="L359" href="#L359">359</a> 
-<a class="jxr_linenumber" name="L360" href="#L360">360</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L361" href="#L361">361</a> <em class="jxr_javadoccomment">     * Reseeds the random data generator.</em>
-<a class="jxr_linenumber" name="L362" href="#L362">362</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L363" href="#L363">363</a> <em class="jxr_javadoccomment">     * @param seed Value with which to reseed the {@link RandomDataImpl}</em>
-<a class="jxr_linenumber" name="L364" href="#L364">364</a> <em class="jxr_javadoccomment">     * used to generate random data.</em>
-<a class="jxr_linenumber" name="L365" href="#L365">365</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L366" href="#L366">366</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> reSeed(<strong class="jxr_keyword">long</strong> seed) {
-<a class="jxr_linenumber" name="L367" href="#L367">367</a>         randomData.reSeed(seed);
-<a class="jxr_linenumber" name="L368" href="#L368">368</a>     }
-<a class="jxr_linenumber" name="L369" href="#L369">369</a> 
-<a class="jxr_linenumber" name="L370" href="#L370">370</a>     <em class="jxr_comment">//------------- private methods ---------------------------------</em>
-<a class="jxr_linenumber" name="L371" href="#L371">371</a> 
-<a class="jxr_linenumber" name="L372" href="#L372">372</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L373" href="#L373">373</a> <em class="jxr_javadoccomment">     * Gets a random value in DIGEST_MODE.</em>
-<a class="jxr_linenumber" name="L374" href="#L374">374</a> <em class="jxr_javadoccomment">     * &lt;p&gt;</em>
-<a class="jxr_linenumber" name="L375" href="#L375">375</a> <em class="jxr_javadoccomment">     * &lt;strong&gt;Preconditions&lt;/strong&gt;: &lt;ul&gt;</em>
-<a class="jxr_linenumber" name="L376" href="#L376">376</a> <em class="jxr_javadoccomment">     * &lt;li&gt;Before this method is called, &lt;code&gt;computeDistribution()&lt;/code&gt;</em>
-<a class="jxr_linenumber" name="L377" href="#L377">377</a> <em class="jxr_javadoccomment">     * must have completed successfully; otherwise an</em>
-<a class="jxr_linenumber" name="L378" href="#L378">378</a> <em class="jxr_javadoccomment">     * &lt;code&gt;IllegalStateException&lt;/code&gt; will be thrown&lt;/li&gt;&lt;/ul&gt;&lt;/p&gt;</em>
-<a class="jxr_linenumber" name="L379" href="#L379">379</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L380" href="#L380">380</a> <em class="jxr_javadoccomment">     * @return next random value from the empirical distribution digest</em>
-<a class="jxr_linenumber" name="L381" href="#L381">381</a> <em class="jxr_javadoccomment">     * @throws MathIllegalStateException if digest has not been initialized</em>
-<a class="jxr_linenumber" name="L382" href="#L382">382</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L383" href="#L383">383</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">double</strong> getNextDigest() <strong class="jxr_keyword">throws</strong> MathIllegalStateException {
-<a class="jxr_linenumber" name="L384" href="#L384">384</a>         <strong class="jxr_keyword">if</strong> ((empiricalDistribution == <strong class="jxr_keyword">null</strong>) ||
-<a class="jxr_linenumber" name="L385" href="#L385">385</a>             (empiricalDistribution.getBinStats().size() == 0)) {
-<a class="jxr_linenumber" name="L386" href="#L386">386</a>             <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> <a href="../../../../../org/apache/commons/math3/exception/MathIllegalStateException.html">MathIllegalStateException</a>(LocalizedFormats.DIGEST_NOT_INITIALIZED);
-<a class="jxr_linenumber" name="L387" href="#L387">387</a>         }
-<a class="jxr_linenumber" name="L388" href="#L388">388</a>         <strong class="jxr_keyword">return</strong> empiricalDistribution.getNextValue();
-<a class="jxr_linenumber" name="L389" href="#L389">389</a>     }
-<a class="jxr_linenumber" name="L390" href="#L390">390</a> 
-<a class="jxr_linenumber" name="L391" href="#L391">391</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L392" href="#L392">392</a> <em class="jxr_javadoccomment">     * Gets next sequential value from the &lt;code&gt;valuesFileURL&lt;/code&gt;.</em>
-<a class="jxr_linenumber" name="L393" href="#L393">393</a> <em class="jxr_javadoccomment">     * &lt;p&gt;</em>
-<a class="jxr_linenumber" name="L394" href="#L394">394</a> <em class="jxr_javadoccomment">     * Throws an IOException if the read fails.&lt;/p&gt;</em>
-<a class="jxr_linenumber" name="L395" href="#L395">395</a> <em class="jxr_javadoccomment">     * &lt;p&gt;</em>
-<a class="jxr_linenumber" name="L396" href="#L396">396</a> <em class="jxr_javadoccomment">     * This method will open the &lt;code&gt;valuesFileURL&lt;/code&gt; if there is no</em>
-<a class="jxr_linenumber" name="L397" href="#L397">397</a> <em class="jxr_javadoccomment">     * replay file open.&lt;/p&gt;</em>
-<a class="jxr_linenumber" name="L398" href="#L398">398</a> <em class="jxr_javadoccomment">     * &lt;p&gt;</em>
-<a class="jxr_linenumber" name="L399" href="#L399">399</a> <em class="jxr_javadoccomment">     * The &lt;code&gt;valuesFileURL&lt;/code&gt; will be closed and reopened to wrap around</em>
-<a class="jxr_linenumber" name="L400" href="#L400">400</a> <em class="jxr_javadoccomment">     * from EOF to BOF if EOF is encountered. EOFException (which is a kind of</em>
-<a class="jxr_linenumber" name="L401" href="#L401">401</a> <em class="jxr_javadoccomment">     * IOException) may still be thrown if the &lt;code&gt;valuesFileURL&lt;/code&gt; is</em>
-<a class="jxr_linenumber" name="L402" href="#L402">402</a> <em class="jxr_javadoccomment">     * empty.&lt;/p&gt;</em>
-<a class="jxr_linenumber" name="L403" href="#L403">403</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L404" href="#L404">404</a> <em class="jxr_javadoccomment">     * @return next value from the replay file</em>
-<a class="jxr_linenumber" name="L405" href="#L405">405</a> <em class="jxr_javadoccomment">     * @throws IOException if there is a problem reading from the file</em>
-<a class="jxr_linenumber" name="L406" href="#L406">406</a> <em class="jxr_javadoccomment">     * @throws MathIllegalStateException if URL contains no data</em>
-<a class="jxr_linenumber" name="L407" href="#L407">407</a> <em class="jxr_javadoccomment">     * @throws NumberFormatException if an invalid numeric string is</em>
-<a class="jxr_linenumber" name="L408" href="#L408">408</a> <em class="jxr_javadoccomment">     *   encountered in the file</em>
-<a class="jxr_linenumber" name="L409" href="#L409">409</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L410" href="#L410">410</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">double</strong> getNextReplay() <strong class="jxr_keyword">throws</strong> IOException, MathIllegalStateException {
-<a class="jxr_linenumber" name="L411" href="#L411">411</a>         String str = <strong class="jxr_keyword">null</strong>;
-<a class="jxr_linenumber" name="L412" href="#L412">412</a>         <strong class="jxr_keyword">if</strong> (filePointer == <strong class="jxr_keyword">null</strong>) {
-<a class="jxr_linenumber" name="L413" href="#L413">413</a>             resetReplayFile();
-<a class="jxr_linenumber" name="L414" href="#L414">414</a>         }
-<a class="jxr_linenumber" name="L415" href="#L415">415</a>         <strong class="jxr_keyword">if</strong> ((str = filePointer.readLine()) == <strong class="jxr_keyword">null</strong>) {
-<a class="jxr_linenumber" name="L416" href="#L416">416</a>             <em class="jxr_comment">// we have probably reached end of file, wrap around from EOF to BOF</em>
-<a class="jxr_linenumber" name="L417" href="#L417">417</a>             closeReplayFile();
-<a class="jxr_linenumber" name="L418" href="#L418">418</a>             resetReplayFile();
-<a class="jxr_linenumber" name="L419" href="#L419">419</a>             <strong class="jxr_keyword">if</strong> ((str = filePointer.readLine()) == <strong class="jxr_keyword">null</strong>) {
-<a class="jxr_linenumber" name="L420" href="#L420">420</a>                 <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> <a href="../../../../../org/apache/commons/math3/exception/MathIllegalStateException.html">MathIllegalStateException</a>(LocalizedFormats.URL_CONTAINS_NO_DATA,
-<a class="jxr_linenumber" name="L421" href="#L421">421</a>                                                     valuesFileURL);
-<a class="jxr_linenumber" name="L422" href="#L422">422</a>             }
-<a class="jxr_linenumber" name="L423" href="#L423">423</a>         }
-<a class="jxr_linenumber" name="L424" href="#L424">424</a>         <strong class="jxr_keyword">return</strong> Double.parseDouble(str);
-<a class="jxr_linenumber" name="L425" href="#L425">425</a>     }
-<a class="jxr_linenumber" name="L426" href="#L426">426</a> 
-<a class="jxr_linenumber" name="L427" href="#L427">427</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L428" href="#L428">428</a> <em class="jxr_javadoccomment">     * Gets a uniformly distributed random value with mean = mu.</em>
-<a class="jxr_linenumber" name="L429" href="#L429">429</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L430" href="#L430">430</a> <em class="jxr_javadoccomment">     * @return random uniform value</em>
-<a class="jxr_linenumber" name="L431" href="#L431">431</a> <em class="jxr_javadoccomment">     * @throws MathIllegalArgumentException if the underlying random generator thwrows one</em>
-<a class="jxr_linenumber" name="L432" href="#L432">432</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L433" href="#L433">433</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">double</strong> getNextUniform() <strong class="jxr_keyword">throws</strong> MathIllegalArgumentException {
-<a class="jxr_linenumber" name="L434" href="#L434">434</a>         <strong class="jxr_keyword">return</strong> randomData.nextUniform(0, 2 * mu);
-<a class="jxr_linenumber" name="L435" href="#L435">435</a>     }
-<a class="jxr_linenumber" name="L436" href="#L436">436</a> 
-<a class="jxr_linenumber" name="L437" href="#L437">437</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L438" href="#L438">438</a> <em class="jxr_javadoccomment">     * Gets an exponentially distributed random value with mean = mu.</em>
-<a class="jxr_linenumber" name="L439" href="#L439">439</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L440" href="#L440">440</a> <em class="jxr_javadoccomment">     * @return random exponential value</em>
-<a class="jxr_linenumber" name="L441" href="#L441">441</a> <em class="jxr_javadoccomment">     * @throws MathIllegalArgumentException if the underlying random generator thwrows one</em>
-<a class="jxr_linenumber" name="L442" href="#L442">442</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L443" href="#L443">443</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">double</strong> getNextExponential() <strong class="jxr_keyword">throws</strong> MathIllegalArgumentException {
-<a class="jxr_linenumber" name="L444" href="#L444">444</a>         <strong class="jxr_keyword">return</strong> randomData.nextExponential(mu);
-<a class="jxr_linenumber" name="L445" href="#L445">445</a>     }
-<a class="jxr_linenumber" name="L446" href="#L446">446</a> 
-<a class="jxr_linenumber" name="L447" href="#L447">447</a>     <em class="jxr_javadoccomment">/**</em>
-<a class="jxr_linenumber" name="L448" href="#L448">448</a> <em class="jxr_javadoccomment">     * Gets a Gaussian distributed random value with mean = mu</em>
-<a class="jxr_linenumber" name="L449" href="#L449">449</a> <em class="jxr_javadoccomment">     * and standard deviation = sigma.</em>
-<a class="jxr_linenumber" name="L450" href="#L450">450</a> <em class="jxr_javadoccomment">     *</em>
-<a class="jxr_linenumber" name="L451" href="#L451">451</a> <em class="jxr_javadoccomment">     * @return random Gaussian value</em>
-<a class="jxr_linenumber" name="L452" href="#L452">452</a> <em class="jxr_javadoccomment">     * @throws MathIllegalArgumentException if the underlying random generator thwrows one</em>
-<a class="jxr_linenumber" name="L453" href="#L453">453</a> <em class="jxr_javadoccomment">     */</em>
-<a class="jxr_linenumber" name="L454" href="#L454">454</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">double</strong> getNextGaussian() <strong class="jxr_keyword">throws</strong> MathIllegalArgumentException {
-<a class="jxr_linenumber" name="L455" href="#L455">455</a>         <strong class="jxr_keyword">return</strong> randomData.nextGaussian(mu, sigma);
-<a class="jxr_linenumber" name="L456" href="#L456">456</a>     }
-<a class="jxr_linenumber" name="L457" href="#L457">457</a> 
-<a class="jxr_linenumber" name="L458" href="#L458">458</a> }
-</pre>
-<hr/>
-<div id="footer">Copyright &#169; 2003&#x2013;2016 <a href="http://www.apache.org/">The Apache Software Foundation</a>. All rights reserved.</div>
-</body>
-</html>

http://git-wip-us.apache.org/repos/asf/commons-complex/blob/b3576eeb/site-content/.svn/pristine/06/062dd86811d0c988d237f713244486a39c052fc6.svn-base
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-<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml" lang="en"><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8"/><link rel="stylesheet" href="../.resources/report.css" type="text/css"/><link rel="shortcut icon" href="../.resources/report.gif" type="image/gif"/><title>Logit.java</title><link rel="stylesheet" href="../.resources/prettify.css" type="text/css"/><script type="text/javascript" src="../.resources/prettify.js"></script></head><body onload="window['PR_TAB_WIDTH']=4;prettyPrint()"><div class="breadcrumb" id="breadcrumb"><span class="info"><a href="../.sessions.html" class="el_session">Sessions</a></span><a href="../index.html" class="el_report">Apache Commons Math</a> &gt; <a href="index.source.html" class="el_package">org.apache.commons.math3.analysis.function</a> &gt; <span class="el_source">Logit.java</span></div><h
 1>Logit.java</h1><pre class="source lang-java linenums">/*
- * Licensed to the Apache Software Foundation (ASF) under one or more
- * contributor license agreements.  See the NOTICE file distributed with
- * this work for additional information regarding copyright ownership.
- * The ASF licenses this file to You under the Apache License, Version 2.0
- * (the &quot;License&quot;); you may not use this file except in compliance with
- * the License.  You may obtain a copy of the License at
- *
- *      http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an &quot;AS IS&quot; BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-package org.apache.commons.math3.analysis.function;
-
-import org.apache.commons.math3.analysis.DifferentiableUnivariateFunction;
-import org.apache.commons.math3.analysis.FunctionUtils;
-import org.apache.commons.math3.analysis.ParametricUnivariateFunction;
-import org.apache.commons.math3.analysis.UnivariateFunction;
-import org.apache.commons.math3.analysis.differentiation.DerivativeStructure;
-import org.apache.commons.math3.analysis.differentiation.UnivariateDifferentiableFunction;
-import org.apache.commons.math3.exception.DimensionMismatchException;
-import org.apache.commons.math3.exception.NullArgumentException;
-import org.apache.commons.math3.exception.OutOfRangeException;
-import org.apache.commons.math3.util.FastMath;
-
-/**
- * &lt;a href=&quot;http://en.wikipedia.org/wiki/Logit&quot;&gt;
- *  Logit&lt;/a&gt; function.
- * It is the inverse of the {@link Sigmoid sigmoid} function.
- *
- * @since 3.0
- */
-public class Logit implements UnivariateDifferentiableFunction, DifferentiableUnivariateFunction {
-    /** Lower bound. */
-    private final double lo;
-    /** Higher bound. */
-    private final double hi;
-
-    /**
-     * Usual logit function, where the lower bound is 0 and the higher
-     * bound is 1.
-     */
-    public Logit() {
-<span class="nc" id="L49">        this(0, 1);</span>
-<span class="nc" id="L50">    }</span>
-
-    /**
-     * Logit function.
-     *
-     * @param lo Lower bound of the function domain.
-     * @param hi Higher bound of the function domain.
-     */
-    public Logit(double lo,
-<span class="fc" id="L59">                 double hi) {</span>
-<span class="fc" id="L60">        this.lo = lo;</span>
-<span class="fc" id="L61">        this.hi = hi;</span>
-<span class="fc" id="L62">    }</span>
-
-    /** {@inheritDoc} */
-    public double value(double x)
-        throws OutOfRangeException {
-<span class="fc" id="L67">        return value(x, lo, hi);</span>
-    }
-
-    /** {@inheritDoc}
-     * @deprecated as of 3.1, replaced by {@link #value(DerivativeStructure)}
-     */
-    @Deprecated
-    public UnivariateFunction derivative() {
-<span class="nc" id="L75">        return FunctionUtils.toDifferentiableUnivariateFunction(this).derivative();</span>
-    }
-
-    /**
-     * Parametric function where the input array contains the parameters of
-     * the logit function, ordered as follows:
-     * &lt;ul&gt;
-     *  &lt;li&gt;Lower bound&lt;/li&gt;
-     *  &lt;li&gt;Higher bound&lt;/li&gt;
-     * &lt;/ul&gt;
-     */
-<span class="fc" id="L86">    public static class Parametric implements ParametricUnivariateFunction {</span>
-        /**
-         * Computes the value of the logit at {@code x}.
-         *
-         * @param x Value for which the function must be computed.
-         * @param param Values of lower bound and higher bounds.
-         * @return the value of the function.
-         * @throws NullArgumentException if {@code param} is {@code null}.
-         * @throws DimensionMismatchException if the size of {@code param} is
-         * not 2.
-         */
-        public double value(double x, double ... param)
-            throws NullArgumentException,
-                   DimensionMismatchException {
-<span class="fc" id="L100">            validateParameters(param);</span>
-<span class="fc" id="L101">            return Logit.value(x, param[0], param[1]);</span>
-        }
-
-        /**
-         * Computes the value of the gradient at {@code x}.
-         * The components of the gradient vector are the partial
-         * derivatives of the function with respect to each of the
-         * &lt;em&gt;parameters&lt;/em&gt; (lower bound and higher bound).
-         *
-         * @param x Value at which the gradient must be computed.
-         * @param param Values for lower and higher bounds.
-         * @return the gradient vector at {@code x}.
-         * @throws NullArgumentException if {@code param} is {@code null}.
-         * @throws DimensionMismatchException if the size of {@code param} is
-         * not 2.
-         */
-        public double[] gradient(double x, double ... param)
-            throws NullArgumentException,
-                   DimensionMismatchException {
-<span class="nc" id="L120">            validateParameters(param);</span>
-
-<span class="nc" id="L122">            final double lo = param[0];</span>
-<span class="nc" id="L123">            final double hi = param[1];</span>
-
-<span class="nc" id="L125">            return new double[] { 1 / (lo - x), 1 / (hi - x) };</span>
-        }
-
-        /**
-         * Validates parameters to ensure they are appropriate for the evaluation of
-         * the {@link #value(double,double[])} and {@link #gradient(double,double[])}
-         * methods.
-         *
-         * @param param Values for lower and higher bounds.
-         * @throws NullArgumentException if {@code param} is {@code null}.
-         * @throws DimensionMismatchException if the size of {@code param} is
-         * not 2.
-         */
-        private void validateParameters(double[] param)
-            throws NullArgumentException,
-                   DimensionMismatchException {
-<span class="fc bfc" id="L141" title="All 2 branches covered.">            if (param == null) {</span>
-<span class="fc" id="L142">                throw new NullArgumentException();</span>
-            }
-<span class="fc bfc" id="L144" title="All 2 branches covered.">            if (param.length != 2) {</span>
-<span class="fc" id="L145">                throw new DimensionMismatchException(param.length, 2);</span>
-            }
-<span class="fc" id="L147">        }</span>
-    }
-
-    /**
-     * @param x Value at which to compute the logit.
-     * @param lo Lower bound.
-     * @param hi Higher bound.
-     * @return the value of the logit function at {@code x}.
-     * @throws OutOfRangeException if {@code x &lt; lo} or {@code x &gt; hi}.
-     */
-    private static double value(double x,
-                                double lo,
-                                double hi)
-        throws OutOfRangeException {
-<span class="fc bfc" id="L161" title="All 4 branches covered.">        if (x &lt; lo || x &gt; hi) {</span>
-<span class="fc" id="L162">            throw new OutOfRangeException(x, lo, hi);</span>
-        }
-<span class="fc" id="L164">        return FastMath.log((x - lo) / (hi - x));</span>
-    }
-
-    /** {@inheritDoc}
-     * @since 3.1
-     * @exception OutOfRangeException if parameter is outside of function domain
-     */
-    public DerivativeStructure value(final DerivativeStructure t)
-        throws OutOfRangeException {
-<span class="fc" id="L173">        final double x = t.getValue();</span>
-<span class="fc bfc" id="L174" title="All 4 branches covered.">        if (x &lt; lo || x &gt; hi) {</span>
-<span class="fc" id="L175">            throw new OutOfRangeException(x, lo, hi);</span>
-        }
-<span class="fc" id="L177">        double[] f = new double[t.getOrder() + 1];</span>
-
-        // function value
-<span class="fc" id="L180">        f[0] = FastMath.log((x - lo) / (hi - x));</span>
-
-<span class="fc bfc" id="L182" title="All 2 branches covered.">        if (Double.isInfinite(f[0])) {</span>
-
-<span class="fc bfc" id="L184" title="All 2 branches covered.">            if (f.length &gt; 1) {</span>
-<span class="fc" id="L185">                f[1] = Double.POSITIVE_INFINITY;</span>
-            }
-            // fill the array with infinities
-            // (for x close to lo the signs will flip between -inf and +inf,
-            //  for x close to hi the signs will always be +inf)
-            // this is probably overkill, since the call to compose at the end
-            // of the method will transform most infinities into NaN ...
-<span class="fc bfc" id="L192" title="All 2 branches covered.">            for (int i = 2; i &lt; f.length; ++i) {</span>
-<span class="fc" id="L193">                f[i] = f[i - 2];</span>
-            }
-
-        } else {
-
-            // function derivatives
-<span class="fc" id="L199">            final double invL = 1.0 / (x - lo);</span>
-<span class="fc" id="L200">            double xL = invL;</span>
-<span class="fc" id="L201">            final double invH = 1.0 / (hi - x);</span>
-<span class="fc" id="L202">            double xH = invH;</span>
-<span class="fc bfc" id="L203" title="All 2 branches covered.">            for (int i = 1; i &lt; f.length; ++i) {</span>
-<span class="fc" id="L204">                f[i] = xL + xH;</span>
-<span class="fc" id="L205">                xL  *= -i * invL;</span>
-<span class="fc" id="L206">                xH  *=  i * invH;</span>
-            }
-        }
-
-<span class="fc" id="L210">        return t.compose(f);</span>
-    }
-}
-</pre><div class="footer"><span class="right">Created with <a href="http://www.eclemma.org/jacoco">JaCoCo</a> 0.7.5.201505241946</span></div></body></html>
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-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
-<!-- NewPage -->
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-</ul>
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-</div>
-<div class="classUseContainer">
-<ul class="blockList">
-<li class="blockList">
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-<tr>
-<th class="colFirst" scope="col">Package</th>
-<th class="colLast" scope="col">Description</th>
-</tr>
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-<tr class="altColor">
-<td class="colFirst"><a href="#org.apache.commons.math3.optimization.general">org.apache.commons.math3.optimization.general</a></td>
-<td class="colLast">
-<div class="block">This package provides optimization algorithms that require derivatives.</div>
-</td>
-</tr>
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-</table>
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-<table border="0" cellpadding="3" cellspacing="0" summary="Use table, listing subclasses, and an explanation">
-<caption><span>Subclasses of <a href="../../../../../../../org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.html" title="class in org.apache.commons.math3.optimization.general">AbstractLeastSquaresOptimizer</a> in <a href="../../../../../../../org/apache/commons/math3/optimization/general/package-summary.html">org.apache.commons.math3.optimization.general</a></span><span class="tabEnd">&nbsp;</span></caption>
-<tr>
-<th class="colFirst" scope="col">Modifier and Type</th>
-<th class="colLast" scope="col">Class and Description</th>
-</tr>
-<tbody>
-<tr class="altColor">
-<td class="colFirst"><code>class&nbsp;</code></td>
-<td class="colLast"><code><strong><a href="../../../../../../../org/apache/commons/math3/optimization/general/GaussNewtonOptimizer.html" title="class in org.apache.commons.math3.optimization.general">GaussNewtonOptimizer</a></strong></code>
-<div class="block"><strong>Deprecated.</strong>&nbsp;
-<div class="block"><i>As of 3.1 (to be removed in 4.0).</i></div>
-</div>
-</td>
-</tr>
-<tr class="rowColor">
-<td class="colFirst"><code>class&nbsp;</code></td>
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-<div class="block"><strong>Deprecated.</strong>&nbsp;
-<div class="block"><i>As of 3.1 (to be removed in 4.0).</i></div>
-</div>
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