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From er...@apache.org
Subject [1/6] commons-numbers git commit: Cleanup.
Date Sat, 21 Jan 2017 11:19:22 GMT
Repository: commons-numbers
Updated Branches:
  refs/heads/master 19d654733 -> c12828547


Cleanup.


Project: http://git-wip-us.apache.org/repos/asf/commons-numbers/repo
Commit: http://git-wip-us.apache.org/repos/asf/commons-numbers/commit/87a89277
Tree: http://git-wip-us.apache.org/repos/asf/commons-numbers/tree/87a89277
Diff: http://git-wip-us.apache.org/repos/asf/commons-numbers/diff/87a89277

Branch: refs/heads/master
Commit: 87a892774da5b7c1b8f9ddcd48270515ddc1d3c5
Parents: 19d6547
Author: Gilles Sadowski <gilles@harfang.homelinux.org>
Authored: Sat Jan 21 11:53:06 2017 +0100
Committer: Gilles Sadowski <gilles@harfang.homelinux.org>
Committed: Sat Jan 21 11:53:06 2017 +0100

----------------------------------------------------------------------
 .../special/RealFunctionValidation/MANIFEST.txt |   1 -
 .../special/RealFunctionValidation/README.txt   | 139 -------
 .../RealFunctionValidation.java                 | 361 -------------------
 .../RealFunctionValidation.sh                   |  24 --
 src/test/maxima/special/reference/gamma.mac     |  59 ---
 .../maxima/special/reference/gamma.properties   |  23 --
 src/test/maxima/special/reference/logBeta.mac   |  60 ---
 .../maxima/special/reference/logBeta.properties |  23 --
 src/test/maxima/special/reference/logGamma.mac  |  49 ---
 .../special/reference/logGamma.properties       |  23 --
 10 files changed, 762 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/87a89277/src/test/maxima/special/RealFunctionValidation/MANIFEST.txt
----------------------------------------------------------------------
diff --git a/src/test/maxima/special/RealFunctionValidation/MANIFEST.txt b/src/test/maxima/special/RealFunctionValidation/MANIFEST.txt
deleted file mode 100644
index 747a7b4..0000000
--- a/src/test/maxima/special/RealFunctionValidation/MANIFEST.txt
+++ /dev/null
@@ -1 +0,0 @@
-Main-Class: RealFunctionValidation

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/87a89277/src/test/maxima/special/RealFunctionValidation/README.txt
----------------------------------------------------------------------
diff --git a/src/test/maxima/special/RealFunctionValidation/README.txt b/src/test/maxima/special/RealFunctionValidation/README.txt
deleted file mode 100644
index d8ffc30..0000000
--- a/src/test/maxima/special/RealFunctionValidation/README.txt
+++ /dev/null
@@ -1,139 +0,0 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one or more
- * contributor license agreements.  See the NOTICE file distributed with
- * this work for additional information regarding copyright ownership.
- * The ASF licenses this file to You under the Apache License, Version 2.0
- * (the "License"); you may not use this file except in compliance with
- * the License.  You may obtain a copy of the License at
- *
- *      http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-Validation of real functions
-============================
-
-This document details the procedure used in Commons-Math 3 to assess the
-accuracy of the implementations of special functions. It is a two-step process
-
-1. reference values are computed with a multi-precision software (for example,
-   the Maxima Computer Algebra System) [1],
-2. these reference values are compared with the Commons-Math3 implementation.
-   The accuracy is computed in ulps.
-
-This process relies on a small Java application, called RealFunctionValidation,
-which can be found in $CM3_SRC/src/test/maxima/special, where $CM3_SRC is the
-root directory to the source of Commons-Math 3
-
-
-Compilation of RealFunctionValidation
--------------------------------------
-
-Change to the relevant directory
-
-  cd $CM3_SRC/src/test/maxima/special/RealFunctionValidation
-
-Compile the source file. The jar file of Commons-Math3 should be included in
-your classpath. If it is installed in your local maven repository, the
-following command should work
-
-  javac -classpath $HOME/.m2/repository/org/apache/commons/commons-math4/4.0-SNAPSHOT/commons-math4-4.0-SNAPSHOT.jar
RealFunctionValidation.java
-
-Create a jar file
-
-  jar cfm RealFunctionValidation.jar MANIFEST.txt RealFunctionValidation*.class
-
-Remove the unused *.class files
-
-  rm *.class
-
-
-Invocation of the application RealFunctionValidation
-----------------------------------------------------
-
-The java application comes with a shell script, RealFunctionValidaton.sh. You
-should edit this file, and change the variables
-- CM3_JAR: full path to the Commons-Math 3 jar file,
-- APP_JAR: full path to the RealFunctionValidation application jar file.
-
-Invoking this application is then very simple. For example, to validate the
-implementation of Gamma.logGamma, change to directory reference
-
-  cd $CM3_SRC/src/test/maxima/special/reference
-
-and run the application
-
-  ../RealFunctionValidation/RealFunctionValidation.sh logGamma.properties
-
-
-Syntax of the *.properties files
---------------------------------
-
-Parameters of the RealFunctionValidation application are specified through a
-standard Java properties file. The following keys must be specified in this
-file
-
-- method: the fully qualified name to the function to be validated. This
-  function should be static, take only primitive arguments, and return double.
-- signature: this key is necessary to discriminate functions with same name.
-  The signature should be specified as in a plain java file. For example
-  signature = double, int, float
-- inputFileMask: the name of the binary input file(s) containing the
-  high-accuracy reference values. The format of this file is described in
-  the next section. It is possible to specify multiple input files, which are
-  indexed by an integer. Then this key should really be understood as a format
-  string. In other words, the name of the file with index i is given by
-  String.format(inputFileMask, i)
-- outputFileMask: the name of the binary output file(s) containing the
-  reference values, the values computed through the specified method, and
-  the error (in ulps). The format of this file is described in the next section.  As for
the input files, it is possible to specify multiple output files.
-- from: the first index
-- to: the last index (exclusive)
-- by: the increment
-
-As an example, here is the properties file for evaluation of
-double Gamma.logGamma(double)
-
-method=org.apache.commons.complex.special.Gamma.logGamma
-signature=double
-inputFileMask=logGamma-%02d.dat
-outputFileMask=logGamma-out-%02d.dat
-from=1
-to=5
-by=1
-
-Format of the input and output binary files
--------------------------------------------
-
-The reference values are saved in a binary file
-- for a unary function f(x), the data is stored as follows
-  x[0], f(x[0]), x[1], f(x[1]), ...
-- for a binary function f(x, y), the data is stored as follows
-  x[0], y[0], f(x[0], y[0]), x[1], y[1], f(x[1], y[1]), ...
-- and similar storage pattern for a n-ary function.
-
-The parameters x[i], y[i], ... can be of arbitrary (primitive) type. The return
-value f(x[i], y[i], ...) must be of type double.
-
-The output files are also saved in a binary file
-- for a unary function f(x), the data is stored as follows
-  x[0], reference value of f(x[0]), actual value of f(x[0], y[0]),
-  error in ulps, x[1], y[1], reference value of f(x[1], y[1]), actual value of
-  f(x[1], y[1]), error in ulps, ...
-- for a binary function f(x, y), the data is stored as follows
-  x[0], y[0], reference value of f(x[0], y[0]), actual value of f(x[0], y[0]),
-  error in ulps, x[1], y[1], reference value of f(x[1], y[1]), actual value of
-  f(x[1], y[1]), error in ulps, ...
-
-The application also prints on the standard output some statistics about the
-error.
-
-References
-----------
-
-[1] http://maxima.sourceforge.net/

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/87a89277/src/test/maxima/special/RealFunctionValidation/RealFunctionValidation.java
----------------------------------------------------------------------
diff --git a/src/test/maxima/special/RealFunctionValidation/RealFunctionValidation.java b/src/test/maxima/special/RealFunctionValidation/RealFunctionValidation.java
deleted file mode 100755
index 8647650..0000000
--- a/src/test/maxima/special/RealFunctionValidation/RealFunctionValidation.java
+++ /dev/null
@@ -1,361 +0,0 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one or more
- * contributor license agreements.  See the NOTICE file distributed with
- * this work for additional information regarding copyright ownership.
- * The ASF licenses this file to You under the Apache License, Version 2.0
- * (the "License"); you may not use this file except in compliance with
- * the License.  You may obtain a copy of the License at
- *
- *      http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-import java.io.DataInputStream;
-import java.io.DataOutputStream;
-import java.io.EOFException;
-import java.io.FileInputStream;
-import java.io.FileOutputStream;
-import java.io.IOException;
-import java.lang.reflect.InvocationTargetException;
-import java.lang.reflect.Method;
-import java.lang.reflect.Modifier;
-import java.util.ArrayList;
-import java.util.List;
-import java.util.Properties;
-
-import org.apache.commons.complex.stat.descriptive.SummaryStatistics;
-import org.apache.commons.complex.util.FastMath;
-
-/*
- * plot 'logGamma.dat' binary format="%double%double" endian=big u 1:2 w l
- */
-public class RealFunctionValidation {
-
-    public static class MissingRequiredPropertyException
-        extends IllegalArgumentException {
-
-        private static final long serialVersionUID = 20121017L;
-
-        public MissingRequiredPropertyException(final String key) {
-
-            super("missing required property " + key);
-        }
-    }
-
-    public static class ApplicationProperties {
-
-        private static final int DOT = '.';
-
-        private static final String METHOD_KEY = "method";
-
-        private static final String SIGNATURE_KEY = "signature";
-
-        private static final String INPUT_FILE_MASK = "inputFileMask";
-
-        private static final String OUTPUT_FILE_MASK = "outputFileMask";
-
-        private static final String FROM_KEY = "from";
-
-        private static final String TO_KEY = "to";
-
-        private static final String BY_KEY = "by";
-
-        final Method method;
-
-        final String inputFileMask;
-
-        final String outputFileMask;
-
-        final int from;
-
-        final int to;
-
-        final int by;
-
-        /**
-         * Returns a {@link Method} with specified signature.
-         *
-         * @param className The fully qualified name of the class to which the
-         * method belongs.
-         * @param methodName The name of the method.
-         * @param signature The signature of the method, as a list of parameter
-         * types.
-         * @return the method
-         * @throws SecurityException
-         * @throws ClassNotFoundException
-         */
-        public static Method findStaticMethod(final String className,
-                                              final String methodName,
-                                              final List<Class<?>> signature)
-            throws SecurityException, ClassNotFoundException {
-
-            final int n = signature.size();
-            final Method[] methods = Class.forName(className).getMethods();
-            for (Method method : methods) {
-                if (method.getName().equals(methodName)) {
-                    final Class<?>[] parameters = method.getParameterTypes();
-                    boolean sameSignature = true;
-                    if (parameters.length == n) {
-                        for (int i = 0; i < n; i++) {
-                            sameSignature &= signature.get(i)
-                                .equals(parameters[i]);
-                        }
-                        if (sameSignature) {
-                            final int modifiers = method.getModifiers();
-                            if ((modifiers & Modifier.STATIC) != 0) {
-                                return method;
-                            } else {
-                                final String msg = "method must be static";
-                                throw new IllegalArgumentException(msg);
-                            }
-                        }
-                    }
-                }
-            }
-            throw new IllegalArgumentException("method not found");
-        }
-
-        public static Class<?> parsePrimitiveType(final String type) {
-
-            if (type.equals("boolean")) {
-                return Boolean.TYPE;
-            } else if (type.equals("byte")) {
-                return Byte.TYPE;
-            } else if (type.equals("char")) {
-                return Character.TYPE;
-            } else if (type.equals("double")) {
-                return Double.TYPE;
-            } else if (type.equals("float")) {
-                return Float.TYPE;
-            } else if (type.equals("int")) {
-                return Integer.TYPE;
-            } else if (type.equals("long")) {
-                return Long.TYPE;
-            } else if (type.equals("short")) {
-                return Short.TYPE;
-            } else {
-                final StringBuilder builder = new StringBuilder();
-                builder.append(type).append(" is not a primitive type");
-                throw new IllegalArgumentException(builder.toString());
-            }
-        }
-
-        private static String getPropertyAsString(final Properties properties,
-                                                  final String key) {
-
-            final String value = properties.getProperty(key);
-            if (value == null) {
-                throw new MissingRequiredPropertyException(key);
-            } else {
-                return value;
-            }
-        }
-
-        private static int getPropertyAsInteger(final Properties properties,
-                                                final String key) {
-
-            final String value = properties.getProperty(key);
-            if (value == null) {
-                throw new MissingRequiredPropertyException(key);
-            } else {
-                return Integer.parseInt(value);
-            }
-        }
-
-        private ApplicationProperties(final String fullyQualifiedName,
-                                      final String signature,
-                                      final String inputFileMask,
-                                      final String outputFileMask,
-                                      final int from, final int to, final int by) {
-
-            this.inputFileMask = inputFileMask;
-            this.outputFileMask = outputFileMask;
-            this.from = from;
-            this.to = to;
-            this.by = by;
-
-            final String[] types = signature.split(",");
-            final List<Class<?>> parameterTypes = new ArrayList<Class<?>>();
-            for (String type : types) {
-                parameterTypes.add(parsePrimitiveType(type.trim()));
-            }
-            final int index = fullyQualifiedName.lastIndexOf(DOT);
-            try {
-                final String className, methodName;
-                className = fullyQualifiedName.substring(0, index);
-                methodName = fullyQualifiedName.substring(index + 1);
-                this.method = findStaticMethod(className, methodName,
-                                               parameterTypes);
-            } catch (ClassNotFoundException e) {
-                throw new IllegalArgumentException(e);
-            }
-
-        }
-
-        public static final ApplicationProperties create(final Properties properties) {
-
-            final String methodFullyQualifiedName;
-            methodFullyQualifiedName = getPropertyAsString(properties,
-                                                           METHOD_KEY);
-
-            final String signature;
-            signature = getPropertyAsString(properties, SIGNATURE_KEY);
-
-            final String inputFileMask;
-            inputFileMask = getPropertyAsString(properties, INPUT_FILE_MASK);
-
-            final String outputFileMask;
-            outputFileMask = getPropertyAsString(properties, OUTPUT_FILE_MASK);
-
-            final int from = getPropertyAsInteger(properties, FROM_KEY);
-            final int to = getPropertyAsInteger(properties, TO_KEY);
-            final int by = getPropertyAsInteger(properties, BY_KEY);
-
-            return new ApplicationProperties(methodFullyQualifiedName,
-                                             signature, inputFileMask,
-                                             outputFileMask, from, to, by);
-        }
-    };
-
-    public static Object readAndWritePrimitiveValue(final DataInputStream in,
-                                                    final DataOutputStream out,
-                                                    final Class<?> type)
-        throws IOException {
-
-        if (!type.isPrimitive()) {
-            throw new IllegalArgumentException("type must be primitive");
-        }
-        if (type.equals(Boolean.TYPE)) {
-            final boolean x = in.readBoolean();
-            out.writeBoolean(x);
-            return Boolean.valueOf(x);
-        } else if (type.equals(Byte.TYPE)) {
-            final byte x = in.readByte();
-            out.writeByte(x);
-            return Byte.valueOf(x);
-        } else if (type.equals(Character.TYPE)) {
-            final char x = in.readChar();
-            out.writeChar(x);
-            return Character.valueOf(x);
-        } else if (type.equals(Double.TYPE)) {
-            final double x = in.readDouble();
-            out.writeDouble(x);
-            return Double.valueOf(x);
-        } else if (type.equals(Float.TYPE)) {
-            final float x = in.readFloat();
-            out.writeFloat(x);
-            return Float.valueOf(x);
-        } else if (type.equals(Integer.TYPE)) {
-            final int x = in.readInt();
-            out.writeInt(x);
-            return Integer.valueOf(x);
-        } else if (type.equals(Long.TYPE)) {
-            final long x = in.readLong();
-            out.writeLong(x);
-            return Long.valueOf(x);
-        } else if (type.equals(Short.TYPE)) {
-            final short x = in.readShort();
-            out.writeShort(x);
-            return Short.valueOf(x);
-        } else {
-            // This should never occur.
-            throw new IllegalStateException();
-        }
-    }
-
-    public static SummaryStatistics assessAccuracy(final Method method,
-                                                   final DataInputStream in,
-                                                   final DataOutputStream out)
-        throws IOException, IllegalAccessException, IllegalArgumentException,
-        InvocationTargetException {
-
-        if (method.getReturnType() != Double.TYPE) {
-            throw new IllegalArgumentException("method must return a double");
-        }
-
-        final Class<?>[] types = method.getParameterTypes();
-        for (int i = 0; i < types.length; i++) {
-            if (!types[i].isPrimitive()) {
-                final StringBuilder builder = new StringBuilder();
-                builder.append("argument #").append(i + 1)
-                    .append(" of method ").append(method.getName())
-                    .append("must be of primitive of type");
-                throw new IllegalArgumentException(builder.toString());
-            }
-        }
-
-        final SummaryStatistics stat = new SummaryStatistics();
-        final Object[] parameters = new Object[types.length];
-        while (true) {
-            try {
-                for (int i = 0; i < parameters.length; i++) {
-                    parameters[i] = readAndWritePrimitiveValue(in, out,
-                                                               types[i]);
-                }
-                final double expected = in.readDouble();
-                if (FastMath.abs(expected) > 1E-16) {
-                    final Object value = method.invoke(null, parameters);
-                    final double actual = ((Double) value).doubleValue();
-                    final double err = FastMath.abs(actual - expected);
-                    final double ulps = err / FastMath.ulp(expected);
-                    out.writeDouble(expected);
-                    out.writeDouble(actual);
-                    out.writeDouble(ulps);
-                    stat.addValue(ulps);
-                }
-            } catch (EOFException e) {
-                break;
-            }
-        }
-        return stat;
-    }
-
-    public static void run(final ApplicationProperties properties)
-        throws IllegalAccessException, IllegalArgumentException,
-        InvocationTargetException, IOException {
-
-        for (int i = properties.from; i < properties.to; i += properties.by) {
-            final String inputFileName;
-            inputFileName = String.format(properties.inputFileMask, i);
-            final String outputFileName;
-            outputFileName = String.format(properties.outputFileMask, i);
-
-            final DataInputStream in;
-            in = new DataInputStream(new FileInputStream(inputFileName));
-            final DataOutputStream out;
-            out = new DataOutputStream(new FileOutputStream(outputFileName));
-
-            final SummaryStatistics stats;
-            stats = assessAccuracy(properties.method, in, out);
-
-            System.out.println("input file name = " + inputFileName);
-            System.out.println("output file name = " + outputFileName);
-            System.out.println(stats);
-        }
-    }
-
-    public static void main(final String[] args)
-        throws IOException, IllegalAccessException, IllegalArgumentException,
-        InvocationTargetException {
-
-        if (args.length == 0) {
-            final String msg = "missing required properties file";
-            throw new IllegalArgumentException(msg);
-        }
-
-        final FileInputStream in = new FileInputStream(args[0]);
-        final Properties properties = new Properties();
-        properties.load(in);
-        in.close();
-
-        final ApplicationProperties p;
-        p = ApplicationProperties.create(properties);
-
-        run(p);
-    }
-}

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/87a89277/src/test/maxima/special/RealFunctionValidation/RealFunctionValidation.sh
----------------------------------------------------------------------
diff --git a/src/test/maxima/special/RealFunctionValidation/RealFunctionValidation.sh b/src/test/maxima/special/RealFunctionValidation/RealFunctionValidation.sh
deleted file mode 100755
index ec49121..0000000
--- a/src/test/maxima/special/RealFunctionValidation/RealFunctionValidation.sh
+++ /dev/null
@@ -1,24 +0,0 @@
-#!/bin/bash
-#
-# Licensed to the Apache Software Foundation (ASF) under one or more
-# contributor license agreements.  See the NOTICE file distributed with
-# this work for additional information regarding copyright ownership.
-# The ASF licenses this file to You under the Apache License, Version 2.0
-# (the "License"); you may not use this file except in compliance with
-# the License.  You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
-# Location of the Commons-Math4 jar file
-CM4_JAR=$HOME/.m2/repository/org/apache/commons/commons-math4/4.0-SNAPSHOT/commons-math4-4.0-SNAPSHOT.jar
-
-# Location of file RealFunctionValidation.jar
-APP_JAR=$HOME/Documents/workspace/commons-math4/src/test/maxima/special/RealFunctionValidation/RealFunctionValidation.jar
-
-java -cp $CM4_JAR:$APP_JAR RealFunctionValidation $1
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/87a89277/src/test/maxima/special/reference/gamma.mac
----------------------------------------------------------------------
diff --git a/src/test/maxima/special/reference/gamma.mac b/src/test/maxima/special/reference/gamma.mac
deleted file mode 100644
index c7ff5f5..0000000
--- a/src/test/maxima/special/reference/gamma.mac
+++ /dev/null
@@ -1,59 +0,0 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one or more
- * contributor license agreements.  See the NOTICE file distributed with
- * this work for additional information regarding copyright ownership.
- * The ASF licenses this file to You under the Apache License, Version 2.0
- * (the "License"); you may not use this file except in compliance with
- * the License.  You may obtain a copy of the License at
- *
- *      http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-/*
- * This script generates reference ("exact") values for the gamma function.
- * The generated values are stored sequentially in a binary file, as follows
- * x[0], f(x[0]), x[1], f(x[1]), ...
- * where f is the function being sampled.
- */
-kill(all);
-
-fpprec : 64;
-f(x) := gamma(x);
-
-sample(x, name) := block(
-  y : [],
-  for i : 1 while i <= length(x) do y : endcons(float(f(x[i])), y),
-  xy : join(float(x), y),
-  stream : openw_binary(name),
-  write_binary_data(xy, stream),
-  close(stream)
-  );
-
-x : makelist(bfloat(i / 1024), i, -5119, -4097);
-sample(x, "gamma-01.dat");
-
-x : makelist(bfloat(i / 1024), i, -4095, -3073);
-sample(x, "gamma-02.dat");
-
-x : makelist(bfloat(i / 1024), i, -3071, -2049);
-sample(x, "gamma-03.dat");
-
-x : makelist(bfloat(i / 1024), i, -2047, -1025);
-sample(x, "gamma-04.dat");
-
-x : makelist(bfloat(i / 1024), i, -1023, -1);
-sample(x, "gamma-05.dat");
-
-x : makelist(bfloat(i / 1024), i, 1, 8192);
-sample(x, "gamma-06.dat");
-
-x : makelist(bfloat(i / 64), i, 513, 9024);
-sample(x, "gamma-07.dat");
-
-

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/87a89277/src/test/maxima/special/reference/gamma.properties
----------------------------------------------------------------------
diff --git a/src/test/maxima/special/reference/gamma.properties b/src/test/maxima/special/reference/gamma.properties
deleted file mode 100755
index 547a4ec..0000000
--- a/src/test/maxima/special/reference/gamma.properties
+++ /dev/null
@@ -1,23 +0,0 @@
-#
-# Licensed to the Apache Software Foundation (ASF) under one or more
-# contributor license agreements.  See the NOTICE file distributed with
-# this work for additional information regarding copyright ownership.
-# The ASF licenses this file to You under the Apache License, Version 2.0
-# (the "License"); you may not use this file except in compliance with
-# the License.  You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
-method=org.apache.commons.complex.special.Gamma.gamma
-signature=double
-inputFileMask=gamma-%02d.dat
-outputFileMask=gamma-out-%02d.dat
-from=1
-to=8
-by=1

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/87a89277/src/test/maxima/special/reference/logBeta.mac
----------------------------------------------------------------------
diff --git a/src/test/maxima/special/reference/logBeta.mac b/src/test/maxima/special/reference/logBeta.mac
deleted file mode 100755
index 7638003..0000000
--- a/src/test/maxima/special/reference/logBeta.mac
+++ /dev/null
@@ -1,60 +0,0 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one or more
- * contributor license agreements.  See the NOTICE file distributed with
- * this work for additional information regarding copyright ownership.
- * The ASF licenses this file to You under the Apache License, Version 2.0
- * (the "License"); you may not use this file except in compliance with
- * the License.  You may obtain a copy of the License at
- *
- *      http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-/*
- * This script generates reference ("exact") values for the logGamma function.
- * The generated values are stored sequentially in a binary file, as follows
- * x[0], f(x[0]), x[1], f(x[1]), ...
- * where f is the function being sampled.
- */
- 
-kill(all);
-fpprec : 64;
-
-sample(x, y, name) := block(
-  stream : openw_binary(name),
-  for i : 1 while i <= length(x) do block(
-    print(i),
-    for j : 1 while j <= length(y) do
-      write_binary_data([x[i], y[j], log(beta(x[i], y[j]))], stream)
-  ),
-  close(stream)
-);
-
-x : makelist(bfloat(i / 32), i, 1, 256);
-y : makelist(bfloat(j / 32), j, 1, 256);
-sample(x, y, "logBeta-01.dat");
-
-x : makelist(bfloat(i / 32), i, 1, 256);
-y : makelist(bfloat(j / 32), j, 257, 512);
-sample(x, y, "logBeta-02.dat");
-
-x : makelist(bfloat(i / 32), i, 1, 256);
-y : makelist(bfloat(j), j, 17, 256);
-sample(x, y, "logBeta-03.dat");
-
-x : makelist(bfloat(i / 32), i, 257, 512);
-y : makelist(bfloat(j / 32), j, 257, 512);
-sample(x, y, "logBeta-04.dat");
-
-x : makelist(bfloat(i / 32), i, 257, 512);
-y : makelist(bfloat(j), j, 17, 256);
-sample(x, y, "logBeta-05.dat");
-
-x : makelist(bfloat(i), i, 17, 256);
-y : makelist(bfloat(j), j, 17, 256);
-sample(x, y, "logBeta-06.dat");

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/87a89277/src/test/maxima/special/reference/logBeta.properties
----------------------------------------------------------------------
diff --git a/src/test/maxima/special/reference/logBeta.properties b/src/test/maxima/special/reference/logBeta.properties
deleted file mode 100755
index e84a46c..0000000
--- a/src/test/maxima/special/reference/logBeta.properties
+++ /dev/null
@@ -1,23 +0,0 @@
-#
-# Licensed to the Apache Software Foundation (ASF) under one or more
-# contributor license agreements.  See the NOTICE file distributed with
-# this work for additional information regarding copyright ownership.
-# The ASF licenses this file to You under the Apache License, Version 2.0
-# (the "License"); you may not use this file except in compliance with
-# the License.  You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
-method=org.apache.commons.complex.special.Beta.logBeta
-signature=double, double
-inputFileMask=logBeta-%02d.dat
-outputFileMask=logBeta-out-%02d.dat
-from=1
-to=7
-by=1

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/87a89277/src/test/maxima/special/reference/logGamma.mac
----------------------------------------------------------------------
diff --git a/src/test/maxima/special/reference/logGamma.mac b/src/test/maxima/special/reference/logGamma.mac
deleted file mode 100644
index 8548097..0000000
--- a/src/test/maxima/special/reference/logGamma.mac
+++ /dev/null
@@ -1,49 +0,0 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one or more
- * contributor license agreements.  See the NOTICE file distributed with
- * this work for additional information regarding copyright ownership.
- * The ASF licenses this file to You under the Apache License, Version 2.0
- * (the "License"); you may not use this file except in compliance with
- * the License.  You may obtain a copy of the License at
- *
- *      http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-/*
- * This script generates reference ("exact") values for the logGamma function.
- * The generated values are stored sequentially in a binary file, as follows
- * x[0], f(x[0]), x[1], f(x[1]), ...
- * where f is the function being sampled.
- */
- 
-kill(all);
-
-fpprec : 64;
-f(x) := log(gamma(x));
-
-sample(x, name) := block(
-  y : [],
-  for i : 1 while i <= length(x) do y : endcons(float(f(x[i])), y),
-  xy : join(float(x), y),
-  stream : openw_binary(name),
-  write_binary_data(xy, stream),
-  close(stream)
-  );
-
-x : append(makelist(bfloat(i / 1024), i, 1, 8192));
-sample(x, "logGamma-01.dat");
-
-x : makelist(bfloat(i / 8), i, 65, 8192);
-sample(x, "logGamma-02.dat");
-
-x : makelist(bfloat(i), i, 1025, 8192);
-sample(x, "logGamma-03.dat");
-
-x : makelist(bfloat(2**(i / 8)), i, 105, 8112);
-sample(x, "logGamma-04.dat");

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/87a89277/src/test/maxima/special/reference/logGamma.properties
----------------------------------------------------------------------
diff --git a/src/test/maxima/special/reference/logGamma.properties b/src/test/maxima/special/reference/logGamma.properties
deleted file mode 100755
index dc60951..0000000
--- a/src/test/maxima/special/reference/logGamma.properties
+++ /dev/null
@@ -1,23 +0,0 @@
-#
-# Licensed to the Apache Software Foundation (ASF) under one or more
-# contributor license agreements.  See the NOTICE file distributed with
-# this work for additional information regarding copyright ownership.
-# The ASF licenses this file to You under the Apache License, Version 2.0
-# (the "License"); you may not use this file except in compliance with
-# the License.  You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
-method=org.apache.commons.complex.special.Gamma.logGamma
-signature=double
-inputFileMask=logGamma-%02d.dat
-outputFileMask=logGamma-out-%02d.dat
-from=1
-to=5
-by=1


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