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From l..@apache.org
Subject svn commit: r11790 - in /dev/commons/math: ./ binaries/ source/
Date Fri, 01 Jan 2016 15:23:45 GMT
Author: luc
Date: Fri Jan  1 15:23:45 2016
New Revision: 11790

Log:
Creating distribution files for Apache Commons Math 3.6 RC1.

Added:
    dev/commons/math/RELEASE-NOTES.txt   (with props)
    dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz   (with props)
    dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz.asc
    dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz.md5
    dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz.sha1
    dev/commons/math/binaries/commons-math3-3.6-bin.zip   (with props)
    dev/commons/math/binaries/commons-math3-3.6-bin.zip.asc
    dev/commons/math/binaries/commons-math3-3.6-bin.zip.md5
    dev/commons/math/binaries/commons-math3-3.6-bin.zip.sha1
    dev/commons/math/source/commons-math3-3.6-src.tar.gz   (with props)
    dev/commons/math/source/commons-math3-3.6-src.tar.gz.asc
    dev/commons/math/source/commons-math3-3.6-src.tar.gz.md5
    dev/commons/math/source/commons-math3-3.6-src.tar.gz.sha1
    dev/commons/math/source/commons-math3-3.6-src.zip   (with props)
    dev/commons/math/source/commons-math3-3.6-src.zip.asc
    dev/commons/math/source/commons-math3-3.6-src.zip.md5
    dev/commons/math/source/commons-math3-3.6-src.zip.sha1
Modified:
    dev/commons/math/README.html

Modified: dev/commons/math/README.html
==============================================================================
--- dev/commons/math/README.html (original)
+++ dev/commons/math/README.html Fri Jan  1 15:23:45 2016
@@ -1,6 +1,6 @@
-<h1>Commons Math 3.5</h1>
+<h1>Commons Math 3.6</h1>
 
-<p>This is version 3.5 of the Commons Math library. It is available in both binary
and source distributions.</p>
+<p>This is version 3.6 of the Commons Math library. It is available in both binary
and source distributions.</p>
 
 
 <p><font color="red" size="+2">Note:</font>
@@ -39,13 +39,13 @@ HREF="http://www.apache.org/dist/commons
 
 <pre>Always test available signatures, <i>e.g.</i>,
 $ pgpk -a KEYS
-$ pgpv commons-math3.3.5.tar.gz.asc
+$ pgpv commons-math3.3.6.tar.gz.asc
 or,
 $ pgp -ka KEYS
-$ pgp commons-math3.3.5tar.gz.asc
+$ pgp commons-math3.3.6.tar.gz.asc
 or,
 $ gpg --import KEYS
-$ gpg --verify commons-math3.3.5.tar.gz.asc
+$ gpg --verify commons-math3.3.6.tar.gz.asc
 </pre>
 <p>
 

Added: dev/commons/math/RELEASE-NOTES.txt
==============================================================================
--- dev/commons/math/RELEASE-NOTES.txt (added)
+++ dev/commons/math/RELEASE-NOTES.txt Fri Jan  1 15:23:45 2016
@@ -0,0 +1,116 @@
+The Apache Commons Math team is pleased to announce the commons-math3-3.6 release!
+
+The Apache Commons Math project is a library of lightweight, self-contained mathematics
+and statistics components addressing the most common practical problems not immediately
+available in the Java programming language or commons-lang.
+
+Changes in this version include:
+
+New features:
+o Added a RotationConvention enumerate to allow specifying the semantics
+        or axis/angle for rotations. This enumerate has two values:
+        VECTOR_OPERATOR and FRAME_TRANSFORM.  Issue: MATH-1302,MATH-1303.
+o Added a field-based version of Ordinary Differential Equations framework.
+        This allows integrating ode that refer to RealField elements instead of
+        primitive double, hence opening the way to use DerivativeStructure to
+        compute partial differential without using variational equations, or to solve
+        ode with extended precision using Dfp.  Issue: MATH-1288.
+o Added a nth order Brent solver for general real fields, replacing the former
+        solver that was restricted to Dfp fields only.
+o New "Range" inner class of "o.a.c.m.util.IntegerSequence".  Issue: MATH-1286.
+o "AggregateSummaryStatistics" can now aggregate any kind of
+        "StatisticalSummary".  Issue: MATH-837.
+o Deep copy of "Network" (package "o.a.c.m.ml.neuralnet") to allow evaluation of
+        of intermediate states during training.  Issue: MATH-1278.
+o Added negative zero support in FastMath.pow.  Issue: MATH-1273. Thanks to Qualtagh.
+o Various SOFM visualizations (in package "o.a.c.m.ml.neuralnet.twod.util"):
+        Unified distance matrix, hit histogram, smoothed data histograms,
+        topographic error, quantization error.  Issue: MATH-1270.
+o New interfaces to be implemented by algorithms that visualizes properties
+        of a "NeuronSquareMesh2D" (package "o.a.c.m.ml.neuralnet.twod.util").  Issue: MATH-1268.
+o Reimplemented pow(double, double) in FastMath, for better accuracy in
+        integral power cases and trying to fix erroneous JIT optimization again.
+o Added a pow(double, long) method in FastMath.
+o "NeuronSquareMesh2D" (package "o.a.c.m.ml.neuralnet.twod") implements "Iterable".  Issue:
MATH-1265.
+o "MapUtils" (package "o.a.c.m.ml.neuralnet"): Method to sort units according to distance
+        from a given vector.  Issue: MATH-1264.
+o Accessor (class "o.a.c.m.ml.neuralnet.twod.NeuronSquareMesh2D").  Issue: MATH-1263.
+o New "IntegerSequence" class (in package "o.a.c.m.util") with "Incrementor" inner class.
 Issue: MATH-1259.
+o "Neuron" class (package "o.a.c.m.ml.neuralnet"): added methods that can be used
+        to assess concurrency performance.  Issue: MATH-1250.
+o Method "cosAngle" in "o.a.c.m.util.MathArrays".  Issue: MATH-1244.
+
+Fixed Bugs:
+o Improved performance and accuracy of 2-sample KolmogorovSmirnov tests.  Issue: MATH-1310.
+o Detect start failures with multi-step ODE integrators.  Issue: MATH-1297.
+o Fixed stability issues with Adams-Bashforth and Adams-Moulton ODE integrators.
+        The integrators did not estimate the local error properly and were sometimes
+        stuck attempting to reduce indefinitely the step size as they thought the
+        error was too high. Thanks to Julien Queyrel.
+o Increased default value for number of allowed evaluations in
+        "o.a.c.m.optim.univariate.BracketFinder".  Issue: MATH-1295. Thanks to Luke Lindsay.
+o Fixed potential race condition in PolynomialUtils#buildPolynomial in
+        case polynomials are generated from multiple threads. Furthermore, the
+        synchronization is now performed on the coefficient list instead of the class.  Issue:
MATH-1294. Thanks to Kamil Włodarczyk.
+o Fixed FastMath.exp that potentially returned NaN for non-NaN argument.  Issue: MATH-1269.
+o Updated reference in ZipfDistribution's javadoc.  Issue: MATH-1285. Thanks to Pim van der
Hoorn.
+o Fixed "Gamma#gamma(double)" for negative values smaller than -20.  Issue: MATH-1283. Thanks
to Jean Noel Delavalade.
+o Fixed javadoc of methods {floorDiv,floorMod} in class "FastMath".  Issue: MATH-1237. Thanks
to Ken Williams.
+o Check precondition (class "o.a.c.m.random.EmpiricalDistribution").  Issue: MATH-1279.
+o Fixed incorrect Kendall's tau coefficient calculation due to internal integer overflow.
 Issue: MATH-1277. Thanks to Marc Rosen.
+o Fixed split/side inconsistencies in BSP trees.  Issue: MATH-1266.
+o Avoid overflow in "Fraction" (multiplication or division by an int).  Issue: MATH-1261.
Thanks to Osamu Ikeuchi.
+o Added check for equal array lengths to distance measure functions.  Issue: MATH-1258. Thanks
to Gunel Jahangirova.
+o Better accuracy in computation of cumulative probability of "NormalDistribution"
+        (package "o.a.c.m.distribution").  Issue: MATH-1257. Thanks to Bill Murphy.
+o Boundary check to construct an "Interval" (package "o.a.c.m.geometry.euclidean.oned").
 Issue: MATH-1256.
+o Wrong neighbourhood size in class "KohonenUpdateAction" (package "o.a.c.m.ml.neuralnet.sofm").
 Issue: MATH-1255.
+o ResizableDoubleArray constructor does not work with double array of size 1.  Issue: MATH-1252.
Thanks to John Bay.
+o Fixed initial value of "number of calls" counter in class "KohonenUpdateAction"
+        (package "o.a.c.m.ml.neuralnet.sofm").  Issue: MATH-1251.
+o Removed unnecessary allocations in "BigFraction" (package "o.a.c.m.fraction").  Issue:
MATH-1248. Thanks to Chris Popp.
+o Fixed error in computing discrete distribution of D statistics for small-sample
+        2-sample Kolmogorov-Smirnov tests. Error was causing incorrect p-values returned
+        by exactP and monteCarloP methods (used by default for small, mid-size samples).
 Issue: MATH-1245.
+o "KolmogorovSmirnovTest#ksSum(...)" returned wrong result in case the provided
+        t-parameters was zero. This affected the calculation of "approximateP(...)" for
+        identical samples.  Issue: MATH-1240.
+o Improved performance to calculate the two-sample Kolmogorov-Smirnov test
+        via monte carlo simulation ("KolmogorovSmirnovTets#monteCarloP(...)").  Issue: MATH-1242.
Thanks to Otmar Ertl.
+o A "StackOverflowException" was thrown when passing Double.NaN or infinity
+        to "Gamma#digamma(double)" or "Gamma#trigamma(double)". Now the input value
+        is propagated to the output if it is not a real number.  Issue: MATH-1241. Thanks
to Aleksei Dievskii.
+o Improved performance of calculating the two-sample Kolmogorov-Smirnov
+        test statistic.  Issue: MATH-1232. Thanks to Otmar Ertl.
+o Fixed error message for unknown parameter name in ODE.  Issue: MATH-1232.
+o Fixed wrong event detection in case of close events pairs.  Issue: MATH-1226.
+o Fix potential branching errors in "FastMath#pow(double, double)" when
+        passing special values, i.e. infinity, due to erroneous JIT optimization.
+o Fixed equals/hashcode contract failure for Dfp.  Issue: MATH-1118.
+o Fixed wrong splitting of huge number in extended accuracy algorithms.  Issue: MATH-1223.
+o Improve performance of "BetaDistribution#sample()" by using Cheng's algorithm.  Issue:
MATH-1153. Thanks to Sergei Lebedev.
+o Computation of 2-sample Kolmogorov-Smirnov statistic in case of ties
+        was not correct.  Issue: MATH-1197.
+
+Changes:
+o Modified 2-sample KolmogorovSmirnovTest to handle ties in sample data. By default,
+        ties are broken by adding random jitter to input data. Also added bootstrap method
+        analogous to ks.boot in R Matching package.  Issue: MATH-1246.
+o Added bootstrap method to KolmogorovSmirnov test.  Issue: MATH-1246.
+o Added constructors taking sample data as arguments to enumerated real and integer distributions.
 Issue: MATH-1287.
+o Improved performance of sampling and inverse cumulative probability calculation
+        for geometric distributions.  Issue: MATH-1276.
+o Representation of Kolmogorov-Smirnov statistic as integral value.  Issue: MATH-1274.
+o Faster generation of Zipf distributed random numbers by using rejection-inversion sampling.
 Issue: MATH-1220.
+o Improved performance of sort-in-place methods by avoiding boxing.  Issue: MATH-990.
+o Refactored implementation of the "miscrosphere projection"
+        interpolation algorithm.
+        New classes: "MicrosphereProjectionInterpolator",
+        "InterpolatingMicrosphere" and "InterpolatingMicrosphere2D"
+        replace "MicrosphereInterpolator" and "MicrosphereInterpolatingFunction".
+        (package "o.a.c.m.analysis.interpolation").  Issue: MATH-1243.
+
+
+Have fun!
+-Apache Commons Math team
+

Propchange: dev/commons/math/RELEASE-NOTES.txt
------------------------------------------------------------------------------
    svn:eol-style = native

Propchange: dev/commons/math/RELEASE-NOTES.txt
------------------------------------------------------------------------------
    svn:keywords = Author Date Id Revision

Added: dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz
==============================================================================
Binary file - no diff available.

Propchange: dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz
------------------------------------------------------------------------------
    svn:mime-type = application/octet-stream

Added: dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz.asc
==============================================================================
--- dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz.asc (added)
+++ dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz.asc Fri Jan  1 15:23:45 2016
@@ -0,0 +1,17 @@
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Added: dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz.md5
==============================================================================
--- dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz.md5 (added)
+++ dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz.md5 Fri Jan  1 15:23:45 2016
@@ -0,0 +1 @@
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Added: dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz.sha1
==============================================================================
--- dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz.sha1 (added)
+++ dev/commons/math/binaries/commons-math3-3.6-bin.tar.gz.sha1 Fri Jan  1 15:23:45 2016
@@ -0,0 +1 @@
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Added: dev/commons/math/binaries/commons-math3-3.6-bin.zip
==============================================================================
Binary file - no diff available.

Propchange: dev/commons/math/binaries/commons-math3-3.6-bin.zip
------------------------------------------------------------------------------
    svn:mime-type = application/octet-stream

Added: dev/commons/math/binaries/commons-math3-3.6-bin.zip.asc
==============================================================================
--- dev/commons/math/binaries/commons-math3-3.6-bin.zip.asc (added)
+++ dev/commons/math/binaries/commons-math3-3.6-bin.zip.asc Fri Jan  1 15:23:45 2016
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Added: dev/commons/math/binaries/commons-math3-3.6-bin.zip.md5
==============================================================================
--- dev/commons/math/binaries/commons-math3-3.6-bin.zip.md5 (added)
+++ dev/commons/math/binaries/commons-math3-3.6-bin.zip.md5 Fri Jan  1 15:23:45 2016
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Added: dev/commons/math/binaries/commons-math3-3.6-bin.zip.sha1
==============================================================================
--- dev/commons/math/binaries/commons-math3-3.6-bin.zip.sha1 (added)
+++ dev/commons/math/binaries/commons-math3-3.6-bin.zip.sha1 Fri Jan  1 15:23:45 2016
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Added: dev/commons/math/source/commons-math3-3.6-src.tar.gz
==============================================================================
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    svn:mime-type = application/octet-stream

Added: dev/commons/math/source/commons-math3-3.6-src.tar.gz.asc
==============================================================================
--- dev/commons/math/source/commons-math3-3.6-src.tar.gz.asc (added)
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Added: dev/commons/math/source/commons-math3-3.6-src.tar.gz.sha1
==============================================================================
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Added: dev/commons/math/source/commons-math3-3.6-src.zip
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==============================================================================
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Added: dev/commons/math/source/commons-math3-3.6-src.zip.md5
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--- dev/commons/math/source/commons-math3-3.6-src.zip.sha1 (added)
+++ dev/commons/math/source/commons-math3-3.6-src.zip.sha1 Fri Jan  1 15:23:45 2016
@@ -0,0 +1 @@
+cb57f642ae87c20c8b084854a4dfcaf73a70998c
\ No newline at end of file



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