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From er...@apache.org
Subject svn commit: r1244107 [9/18] - in /commons/proper/math/trunk: ./ src/main/java/org/apache/commons/math/ src/main/java/org/apache/commons/math3/ src/main/java/org/apache/commons/math3/analysis/ src/main/java/org/apache/commons/math3/analysis/function/ sr...
Date Tue, 14 Feb 2012 16:18:50 GMT
Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/package-info.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/package-info.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/package-info.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/package-info.java Tue Feb 14 16:17:55 2012
@@ -36,7 +36,7 @@
  * computing the state vector at discrete times, they also provide a
  * cheap mean to get the state between the time steps. They do so through
  * classes extending the {@link
- * org.apache.commons.math.ode.sampling.StepInterpolator StepInterpolator}
+ * org.apache.commons.math3.ode.sampling.StepInterpolator StepInterpolator}
  * abstract class, which are made available to the user at the end of
  * each step.
  * </p>
@@ -56,10 +56,10 @@
  * <p>
  * The user should describe his problem in his own classes
  * (<code>UserProblem</code> in the diagram below) which should implement
- * the {@link org.apache.commons.math.ode.FirstOrderDifferentialEquations
+ * the {@link org.apache.commons.math3.ode.FirstOrderDifferentialEquations
  * FirstOrderDifferentialEquations} interface. Then he should pass it to
  * the integrator he prefers among all the classes that implement the
- * {@link org.apache.commons.math.ode.FirstOrderIntegrator
+ * {@link org.apache.commons.math3.ode.FirstOrderIntegrator
  * FirstOrderIntegrator} interface.
  * </p>
  *
@@ -67,23 +67,23 @@
  * The solution of the integration problem is provided by two means. The
  * first one is aimed towards simple use: the state vector at the end of
  * the integration process is copied in the <code>y</code> array of the
- * {@link org.apache.commons.math.ode.FirstOrderIntegrator#integrate
+ * {@link org.apache.commons.math3.ode.FirstOrderIntegrator#integrate
  * FirstOrderIntegrator.integrate} method. The second one should be used
  * when more in-depth information is needed throughout the integration
  * process. The user can register an object implementing the {@link
- * org.apache.commons.math.ode.sampling.StepHandler StepHandler} interface or a
- * {@link org.apache.commons.math.ode.sampling.StepNormalizer StepNormalizer}
+ * org.apache.commons.math3.ode.sampling.StepHandler StepHandler} interface or a
+ * {@link org.apache.commons.math3.ode.sampling.StepNormalizer StepNormalizer}
  * object wrapping a user-specified object implementing the {@link
- * org.apache.commons.math.ode.sampling.FixedStepHandler FixedStepHandler}
+ * org.apache.commons.math3.ode.sampling.FixedStepHandler FixedStepHandler}
  * interface into the integrator before calling the {@link
- * org.apache.commons.math.ode.FirstOrderIntegrator#integrate
+ * org.apache.commons.math3.ode.FirstOrderIntegrator#integrate
  * FirstOrderIntegrator.integrate} method. The user object will be called
  * appropriately during the integration process, allowing the user to
  * process intermediate results. The default step handler does nothing.
  * </p>
  *
  * <p>
- * {@link org.apache.commons.math.ode.ContinuousOutputModel
+ * {@link org.apache.commons.math3.ode.ContinuousOutputModel
  * ContinuousOutputModel} is a special-purpose step handler that is able
  * to store all steps and to provide transparent access to any
  * intermediate result once the integration is over. An important feature
@@ -98,10 +98,10 @@
  *
  * <p>
  * Other default implementations of the {@link
- * org.apache.commons.math.ode.sampling.StepHandler StepHandler} interface are
+ * org.apache.commons.math3.ode.sampling.StepHandler StepHandler} interface are
  * available for general needs ({@link
- * org.apache.commons.math.ode.sampling.DummyStepHandler DummyStepHandler}, {@link
- * org.apache.commons.math.ode.sampling.StepNormalizer StepNormalizer}) and custom
+ * org.apache.commons.math3.ode.sampling.DummyStepHandler DummyStepHandler}, {@link
+ * org.apache.commons.math3.ode.sampling.StepNormalizer StepNormalizer}) and custom
  * implementations can be developed for specific needs. As an example,
  * if an application is to be completely driven by the integration
  * process, then most of the application code will be run inside a step
@@ -113,14 +113,14 @@
  * creation time. The more efficient integrators use variable steps that
  * are handled internally in order to control the integration error with
  * respect to a specified accuracy (these integrators extend the {@link
- * org.apache.commons.math.ode.nonstiff.AdaptiveStepsizeIntegrator
+ * org.apache.commons.math3.ode.nonstiff.AdaptiveStepsizeIntegrator
  * AdaptiveStepsizeIntegrator} abstract class). In this case, the step
  * handler which is called after each successful step shows up the
  * variable stepsize. The {@link
- * org.apache.commons.math.ode.sampling.StepNormalizer StepNormalizer} class can
+ * org.apache.commons.math3.ode.sampling.StepNormalizer StepNormalizer} class can
  * be used to convert the variable stepsize into a fixed stepsize that
  * can be handled by classes implementing the {@link
- * org.apache.commons.math.ode.sampling.FixedStepHandler FixedStepHandler}
+ * org.apache.commons.math3.ode.sampling.FixedStepHandler FixedStepHandler}
  * interface. Adaptive stepsize integrators can automatically compute the
  * initial stepsize by themselves, however the user can specify it if he
  * prefers to retain full control over the integration or if the
@@ -131,33 +131,33 @@
  * <table border="1" align="center">
  * <tr BGCOLOR="#CCCCFF"><td colspan=2><font size="+2">Fixed Step Integrators</font></td></tr>
  * <tr BGCOLOR="#EEEEFF"><font size="+1"><td>Name</td><td>Order</td></font></tr>
- * <tr><td>{@link org.apache.commons.math.ode.nonstiff.EulerIntegrator Euler}</td><td>1</td></tr>
- * <tr><td>{@link org.apache.commons.math.ode.nonstiff.MidpointIntegrator Midpoint}</td><td>2</td></tr>
- * <tr><td>{@link org.apache.commons.math.ode.nonstiff.ClassicalRungeKuttaIntegrator Classical Runge-Kutta}</td><td>4</td></tr>
- * <tr><td>{@link org.apache.commons.math.ode.nonstiff.GillIntegrator Gill}</td><td>4</td></tr>
- * <tr><td>{@link org.apache.commons.math.ode.nonstiff.ThreeEighthesIntegrator 3/8}</td><td>4</td></tr>
+ * <tr><td>{@link org.apache.commons.math3.ode.nonstiff.EulerIntegrator Euler}</td><td>1</td></tr>
+ * <tr><td>{@link org.apache.commons.math3.ode.nonstiff.MidpointIntegrator Midpoint}</td><td>2</td></tr>
+ * <tr><td>{@link org.apache.commons.math3.ode.nonstiff.ClassicalRungeKuttaIntegrator Classical Runge-Kutta}</td><td>4</td></tr>
+ * <tr><td>{@link org.apache.commons.math3.ode.nonstiff.GillIntegrator Gill}</td><td>4</td></tr>
+ * <tr><td>{@link org.apache.commons.math3.ode.nonstiff.ThreeEighthesIntegrator 3/8}</td><td>4</td></tr>
  * </table>
  * </p>
  *
  * <table border="1" align="center">
  * <tr BGCOLOR="#CCCCFF"><td colspan=3><font size="+2">Adaptive Stepsize Integrators</font></td></tr>
  * <tr BGCOLOR="#EEEEFF"><font size="+1"><td>Name</td><td>Integration Order</td><td>Error Estimation Order</td></font></tr>
- * <tr><td>{@link org.apache.commons.math.ode.nonstiff.HighamHall54Integrator Higham and Hall}</td><td>5</td><td>4</td></tr>
- * <tr><td>{@link org.apache.commons.math.ode.nonstiff.DormandPrince54Integrator Dormand-Prince 5(4)}</td><td>5</td><td>4</td></tr>
- * <tr><td>{@link org.apache.commons.math.ode.nonstiff.DormandPrince853Integrator Dormand-Prince 8(5,3)}</td><td>8</td><td>5 and 3</td></tr>
- * <tr><td>{@link org.apache.commons.math.ode.nonstiff.GraggBulirschStoerIntegrator Gragg-Bulirsch-Stoer}</td><td>variable (up to 18 by default)</td><td>variable</td></tr>
- * <tr><td>{@link org.apache.commons.math.ode.nonstiff.AdamsBashforthIntegrator Adams-Bashforth}</td><td>variable</td><td>variable</td></tr>
- * <tr><td>{@link org.apache.commons.math.ode.nonstiff.AdamsMoultonIntegrator Adams-Moulton}</td><td>variable</td><td>variable</td></tr>
+ * <tr><td>{@link org.apache.commons.math3.ode.nonstiff.HighamHall54Integrator Higham and Hall}</td><td>5</td><td>4</td></tr>
+ * <tr><td>{@link org.apache.commons.math3.ode.nonstiff.DormandPrince54Integrator Dormand-Prince 5(4)}</td><td>5</td><td>4</td></tr>
+ * <tr><td>{@link org.apache.commons.math3.ode.nonstiff.DormandPrince853Integrator Dormand-Prince 8(5,3)}</td><td>8</td><td>5 and 3</td></tr>
+ * <tr><td>{@link org.apache.commons.math3.ode.nonstiff.GraggBulirschStoerIntegrator Gragg-Bulirsch-Stoer}</td><td>variable (up to 18 by default)</td><td>variable</td></tr>
+ * <tr><td>{@link org.apache.commons.math3.ode.nonstiff.AdamsBashforthIntegrator Adams-Bashforth}</td><td>variable</td><td>variable</td></tr>
+ * <tr><td>{@link org.apache.commons.math3.ode.nonstiff.AdamsMoultonIntegrator Adams-Moulton}</td><td>variable</td><td>variable</td></tr>
  * </table>
  * </p>
  *
  * <p>
- * In the table above, the {@link org.apache.commons.math.ode.nonstiff.AdamsBashforthIntegrator
- * Adams-Bashforth} and {@link org.apache.commons.math.ode.nonstiff.AdamsMoultonIntegrator
+ * In the table above, the {@link org.apache.commons.math3.ode.nonstiff.AdamsBashforthIntegrator
+ * Adams-Bashforth} and {@link org.apache.commons.math3.ode.nonstiff.AdamsMoultonIntegrator
  * Adams-Moulton} integrators appear as variable-step ones. This is an experimental extension
  * to the classical algorithms using the Nordsieck vector representation.
  * </p>
  *
  *
  */
-package org.apache.commons.math.ode;
+package org.apache.commons.math3.ode;

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/AbstractStepInterpolator.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/AbstractStepInterpolator.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/AbstractStepInterpolator.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/AbstractStepInterpolator.java Tue Feb 14 16:17:55 2012
@@ -15,13 +15,13 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.ode.sampling;
+package org.apache.commons.math3.ode.sampling;
 
 import java.io.IOException;
 import java.io.ObjectInput;
 import java.io.ObjectOutput;
 
-import org.apache.commons.math.ode.EquationsMapper;
+import org.apache.commons.math3.ode.EquationsMapper;
 
 /** This abstract class represents an interpolator over the last step
  * during an ODE integration.
@@ -31,8 +31,8 @@ import org.apache.commons.math.ode.Equat
  * retrieve the state vector at intermediate times between the
  * previous and the current grid points (dense output).</p>
  *
- * @see org.apache.commons.math.ode.FirstOrderIntegrator
- * @see org.apache.commons.math.ode.SecondOrderIntegrator
+ * @see org.apache.commons.math3.ode.FirstOrderIntegrator
+ * @see org.apache.commons.math3.ode.SecondOrderIntegrator
  * @see StepHandler
  *
  * @version $Id$
@@ -103,7 +103,7 @@ public abstract class AbstractStepInterp
    * instance in order to initialize the internal arrays. This
    * constructor is used only in order to delay the initialization in
    * some cases. As an example, the {@link
-   * org.apache.commons.math.ode.nonstiff.EmbeddedRungeKuttaIntegrator}
+   * org.apache.commons.math3.ode.nonstiff.EmbeddedRungeKuttaIntegrator}
    * class uses the prototyping design pattern to create the step
    * interpolators by cloning an uninitialized model and latter
    * initializing the copy.

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/DummyStepHandler.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/DummyStepHandler.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/DummyStepHandler.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/DummyStepHandler.java Tue Feb 14 16:17:55 2012
@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.ode.sampling;
+package org.apache.commons.math3.ode.sampling;
 
 /**
  * This class is a step handler that does nothing.

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/FixedStepHandler.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/FixedStepHandler.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/FixedStepHandler.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/FixedStepHandler.java Tue Feb 14 16:17:55 2012
@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.ode.sampling;
+package org.apache.commons.math3.ode.sampling;
 
 
 /**

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/NordsieckStepInterpolator.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/NordsieckStepInterpolator.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/NordsieckStepInterpolator.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/NordsieckStepInterpolator.java Tue Feb 14 16:17:55 2012
@@ -15,16 +15,16 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.ode.sampling;
+package org.apache.commons.math3.ode.sampling;
 
 import java.io.IOException;
 import java.io.ObjectInput;
 import java.io.ObjectOutput;
 import java.util.Arrays;
 
-import org.apache.commons.math.linear.Array2DRowRealMatrix;
-import org.apache.commons.math.ode.EquationsMapper;
-import org.apache.commons.math.util.FastMath;
+import org.apache.commons.math3.linear.Array2DRowRealMatrix;
+import org.apache.commons.math3.ode.EquationsMapper;
+import org.apache.commons.math3.util.FastMath;
 
 /**
  * This class implements an interpolator for integrators using Nordsieck representation.
@@ -32,8 +32,8 @@ import org.apache.commons.math.util.Fast
  * <p>This interpolator computes dense output around the current point.
  * The interpolation equation is based on Taylor series formulas.
  *
- * @see org.apache.commons.math.ode.nonstiff.AdamsBashforthIntegrator
- * @see org.apache.commons.math.ode.nonstiff.AdamsMoultonIntegrator
+ * @see org.apache.commons.math3.ode.nonstiff.AdamsBashforthIntegrator
+ * @see org.apache.commons.math3.ode.nonstiff.AdamsMoultonIntegrator
  * @version $Id$
  * @since 2.0
  */

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepHandler.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepHandler.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepHandler.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepHandler.java Tue Feb 14 16:17:55 2012
@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.ode.sampling;
+package org.apache.commons.math3.ode.sampling;
 
 
 /**
@@ -31,8 +31,8 @@ package org.apache.commons.math.ode.samp
  * last one, store the points in an ephemeris, or forward them to
  * specialized processing or output methods.</p>
  *
- * @see org.apache.commons.math.ode.FirstOrderIntegrator
- * @see org.apache.commons.math.ode.SecondOrderIntegrator
+ * @see org.apache.commons.math3.ode.FirstOrderIntegrator
+ * @see org.apache.commons.math3.ode.SecondOrderIntegrator
  * @see StepInterpolator
  * @version $Id$
  * @since 1.2
@@ -59,7 +59,7 @@ public interface StepHandler {
      * object on each call, so if the instance wants to keep it across
      * all calls (for example to provide at the end of the integration a
      * continuous model valid throughout the integration range, as the
-     * {@link org.apache.commons.math.ode.ContinuousOutputModel
+     * {@link org.apache.commons.math3.ode.ContinuousOutputModel
      * ContinuousOutputModel} class does), it should build a local copy
      * using the clone method of the interpolator and store this copy.
      * Keeping only a reference to the interpolator and reusing it will

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepInterpolator.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepInterpolator.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepInterpolator.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepInterpolator.java Tue Feb 14 16:17:55 2012
@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.ode.sampling;
+package org.apache.commons.math3.ode.sampling;
 
 import java.io.Externalizable;
 
@@ -37,8 +37,8 @@ import java.io.Externalizable;
  * {@link #copy()} method.
  * </p>
  *
- * @see org.apache.commons.math.ode.FirstOrderIntegrator
- * @see org.apache.commons.math.ode.SecondOrderIntegrator
+ * @see org.apache.commons.math3.ode.FirstOrderIntegrator
+ * @see org.apache.commons.math3.ode.SecondOrderIntegrator
  * @see StepHandler
  * @version $Id$
  * @since 1.2
@@ -106,8 +106,8 @@ public interface StepInterpolator extend
    * it should not be modified and it should be copied if it needs
    * to be preserved across several calls.</p>
    * @param index index of the secondary set, as returned by {@link
-   * org.apache.commons.math.ode.ExpandableStatefulODE#addSecondaryEquations(
-   * org.apache.commons.math.ode.SecondaryEquations)
+   * org.apache.commons.math3.ode.ExpandableStatefulODE#addSecondaryEquations(
+   * org.apache.commons.math3.ode.SecondaryEquations)
    * ExpandableStatefulODE.addSecondaryEquations(SecondaryEquations)}
    * @return interpolated secondary state at the current interpolation date
    * @see #getInterpolatedState()
@@ -123,8 +123,8 @@ public interface StepInterpolator extend
    * it should not be modified and it should be copied if it needs
    * to be preserved across several calls.</p>
    * @param index index of the secondary set, as returned by {@link
-   * org.apache.commons.math.ode.ExpandableStatefulODE#addSecondaryEquations(
-   * org.apache.commons.math.ode.SecondaryEquations)
+   * org.apache.commons.math3.ode.ExpandableStatefulODE#addSecondaryEquations(
+   * org.apache.commons.math3.ode.SecondaryEquations)
    * ExpandableStatefulODE.addSecondaryEquations(SecondaryEquations)}
    * @return interpolated secondary derivatives at the current interpolation date
    * @see #getInterpolatedState()

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepNormalizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepNormalizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepNormalizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepNormalizer.java Tue Feb 14 16:17:55 2012
@@ -15,10 +15,10 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.ode.sampling;
+package org.apache.commons.math3.ode.sampling;
 
-import org.apache.commons.math.util.FastMath;
-import org.apache.commons.math.util.Precision;
+import org.apache.commons.math3.util.FastMath;
+import org.apache.commons.math3.util.Precision;
 
 /**
  * This class wraps an object implementing {@link FixedStepHandler}

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepNormalizerBounds.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepNormalizerBounds.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepNormalizerBounds.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepNormalizerBounds.java Tue Feb 14 16:17:55 2012
@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.ode.sampling;
+package org.apache.commons.math3.ode.sampling;
 
 /** {@link StepNormalizer Step normalizer} bounds settings. They influence
  * whether the underlying fixed step size step handler is called for the first

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepNormalizerMode.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepNormalizerMode.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepNormalizerMode.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/StepNormalizerMode.java Tue Feb 14 16:17:55 2012
@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.ode.sampling;
+package org.apache.commons.math3.ode.sampling;
 
 
 /** {@link StepNormalizer Step normalizer} modes. Determines how the step size

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/package-info.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/package-info.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/package-info.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/ode/sampling/package-info.java Tue Feb 14 16:17:55 2012
@@ -25,8 +25,8 @@
  * In addition to computing the evolution of the state vector at some grid points, all
  * ODE integrators also build up interpolation models of this evolution <em>inside</em> the
  * last computed step. If users are interested in these interpolators, they can register a
- * {@link org.apache.commons.math.ode.sampling.StepHandler StepHandler} instance using the
- * {@link org.apache.commons.math.ode.FirstOrderIntegrator#addStepHandler addStepHandler}
+ * {@link org.apache.commons.math3.ode.sampling.StepHandler StepHandler} instance using the
+ * {@link org.apache.commons.math3.ode.FirstOrderIntegrator#addStepHandler addStepHandler}
  * method which is supported by all integrators. The integrator will call this instance
  * at the end of each accepted step and provide it the interpolator. The user can do
  * whatever he wants with this interpolator, which computes both the state and its
@@ -44,17 +44,17 @@
  *
  * <p>
  * Since some integrators may use variable step size, the generic {@link
- * org.apache.commons.math.ode.sampling.StepHandler StepHandler} interface can be called
+ * org.apache.commons.math3.ode.sampling.StepHandler StepHandler} interface can be called
  * either at regular or irregular rate. This interface allows to navigate to any location
  * within the last computed step, thanks to the provided {@link
- * org.apache.commons.math.ode.sampling.StepInterpolator StepInterpolator} object.
+ * org.apache.commons.math3.ode.sampling.StepInterpolator StepInterpolator} object.
  * If regular output is desired (for example in order to write an ephemeris file), then
- * the simpler {@link org.apache.commons.math.ode.sampling.FixedStepHandler FixedStepHandler}
+ * the simpler {@link org.apache.commons.math3.ode.sampling.FixedStepHandler FixedStepHandler}
  * interface can be used. Objects implementing this interface should be wrapped within a
- * {@link org.apache.commons.math.ode.sampling.StepNormalizer StepNormalizer} instance
+ * {@link org.apache.commons.math3.ode.sampling.StepNormalizer StepNormalizer} instance
  * in order to be registered to the integrator.
  * </p>
  *
  *
  */
-package org.apache.commons.math.ode.sampling;
+package org.apache.commons.math3.ode.sampling;

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/AbstractConvergenceChecker.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/AbstractConvergenceChecker.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/AbstractConvergenceChecker.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/AbstractConvergenceChecker.java Tue Feb 14 16:17:55 2012
@@ -15,9 +15,9 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.util.Precision;
+import org.apache.commons.math3.util.Precision;
 
 /**
  * Base class for all convergence checker implementations.

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateMultiStartOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateMultiStartOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateMultiStartOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateMultiStartOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,17 +15,17 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
 import java.util.Arrays;
 import java.util.Comparator;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.exception.MathIllegalStateException;
-import org.apache.commons.math.exception.NotStrictlyPositiveException;
-import org.apache.commons.math.exception.NullArgumentException;
-import org.apache.commons.math.exception.util.LocalizedFormats;
-import org.apache.commons.math.random.RandomVectorGenerator;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.exception.MathIllegalStateException;
+import org.apache.commons.math3.exception.NotStrictlyPositiveException;
+import org.apache.commons.math3.exception.NullArgumentException;
+import org.apache.commons.math3.exception.util.LocalizedFormats;
+import org.apache.commons.math3.random.RandomVectorGenerator;
 
 /**
  * Base class for all implementations of a multi-start optimizer.

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,17 +15,17 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
+import org.apache.commons.math3.analysis.MultivariateFunction;
 
 /**
  * This interface is mainly intended to enforce the internal coherence of
  * Commons-FastMath. Users of the API are advised to base their code on
  * the following interfaces:
  * <ul>
- *  <li>{@link org.apache.commons.math.optimization.MultivariateOptimizer}</li>
- *  <li>{@link org.apache.commons.math.optimization.DifferentiableMultivariateOptimizer}</li>
+ *  <li>{@link org.apache.commons.math3.optimization.MultivariateOptimizer}</li>
+ *  <li>{@link org.apache.commons.math3.optimization.DifferentiableMultivariateOptimizer}</li>
  * </ul>
  *
  * @param <FUNC> Type of the objective function to be optimized.
@@ -45,11 +45,11 @@ public interface BaseMultivariateOptimiz
      * @param maxEval Maximum number of function evaluations.
      * @return the point/value pair giving the optimal value for objective
      * function.
-     * @throws org.apache.commons.math.exception.DimensionMismatchException
+     * @throws org.apache.commons.math3.exception.DimensionMismatchException
      * if the start point dimension is wrong.
-     * @throws org.apache.commons.math.exception.TooManyEvaluationsException
+     * @throws org.apache.commons.math3.exception.TooManyEvaluationsException
      * if the maximal number of evaluations is exceeded.
-     * @throws org.apache.commons.math.exception.NullArgumentException if
+     * @throws org.apache.commons.math3.exception.NullArgumentException if
      * any argument is {@code null}.
      */
     PointValuePair optimize(int maxEval, FUNC f, GoalType goalType,

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateSimpleBoundsOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateSimpleBoundsOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateSimpleBoundsOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateSimpleBoundsOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,17 +15,17 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
+import org.apache.commons.math3.analysis.MultivariateFunction;
 
 /**
  * This interface is mainly intended to enforce the internal coherence of
  * Commons-FastMath. Users of the API are advised to base their code on
  * the following interfaces:
  * <ul>
- *  <li>{@link org.apache.commons.math.optimization.MultivariateOptimizer}</li>
- *  <li>{@link org.apache.commons.math.optimization.DifferentiableMultivariateOptimizer}</li>
+ *  <li>{@link org.apache.commons.math3.optimization.MultivariateOptimizer}</li>
+ *  <li>{@link org.apache.commons.math3.optimization.DifferentiableMultivariateOptimizer}</li>
  * </ul>
  *
  * @param <FUNC> Type of the objective function to be optimized.
@@ -47,15 +47,15 @@ public interface BaseMultivariateSimpleB
      * @param upperBound Upper bound for each of the parameters.
      * @return the point/value pair giving the optimal value for objective
      * function.
-     * @throws org.apache.commons.math.exception.DimensionMismatchException
+     * @throws org.apache.commons.math3.exception.DimensionMismatchException
      * if the array sizes are wrong.
-     * @throws org.apache.commons.math.exception.TooManyEvaluationsException
+     * @throws org.apache.commons.math3.exception.TooManyEvaluationsException
      * if the maximal number of evaluations is exceeded.
-     * @throws org.apache.commons.math.exception.NullArgumentException if
+     * @throws org.apache.commons.math3.exception.NullArgumentException if
      * {@code f}, {@code goalType} or {@code startPoint} is {@code null}.
-     * @throws org.apache.commons.math.exception.NumberIsTooSmallException if any
+     * @throws org.apache.commons.math3.exception.NumberIsTooSmallException if any
      * of the initial values is less than its lower bound.
-     * @throws org.apache.commons.math.exception.NumberIsTooLargeException if any
+     * @throws org.apache.commons.math3.exception.NumberIsTooLargeException if any
      * of the initial values is greater than its upper bound.
      */
     PointValuePair optimize(int maxEval, FUNC f, GoalType goalType,

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateVectorMultiStartOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateVectorMultiStartOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateVectorMultiStartOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateVectorMultiStartOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,18 +15,18 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
 import java.util.Arrays;
 import java.util.Comparator;
 
-import org.apache.commons.math.analysis.MultivariateVectorFunction;
-import org.apache.commons.math.exception.ConvergenceException;
-import org.apache.commons.math.exception.MathIllegalStateException;
-import org.apache.commons.math.exception.NotStrictlyPositiveException;
-import org.apache.commons.math.exception.NullArgumentException;
-import org.apache.commons.math.exception.util.LocalizedFormats;
-import org.apache.commons.math.random.RandomVectorGenerator;
+import org.apache.commons.math3.analysis.MultivariateVectorFunction;
+import org.apache.commons.math3.exception.ConvergenceException;
+import org.apache.commons.math3.exception.MathIllegalStateException;
+import org.apache.commons.math3.exception.NotStrictlyPositiveException;
+import org.apache.commons.math3.exception.NullArgumentException;
+import org.apache.commons.math3.exception.util.LocalizedFormats;
+import org.apache.commons.math3.random.RandomVectorGenerator;
 
 /**
  * Base class for all implementations of a multi-start optimizer.

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateVectorOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateVectorOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateVectorOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseMultivariateVectorOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,16 +15,16 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.analysis.MultivariateVectorFunction;
+import org.apache.commons.math3.analysis.MultivariateVectorFunction;
 
 /**
  * This interface is mainly intended to enforce the internal coherence of
  * Commons-Math. Users of the API are advised to base their code on
  * the following interfaces:
  * <ul>
- *  <li>{@link org.apache.commons.math.optimization.DifferentiableMultivariateVectorOptimizer}</li>
+ *  <li>{@link org.apache.commons.math3.optimization.DifferentiableMultivariateVectorOptimizer}</li>
  * </ul>
  *
  * @param <FUNC> Type of the objective function to be optimized.
@@ -47,11 +47,11 @@ public interface BaseMultivariateVectorO
      * @return the point/value pair giving the optimal value for objective
      * function.
      * @param maxEval Maximum number of function evaluations.
-     * @throws org.apache.commons.math.exception.DimensionMismatchException
+     * @throws org.apache.commons.math3.exception.DimensionMismatchException
      * if the start point dimension is wrong.
-     * @throws org.apache.commons.math.exception.TooManyEvaluationsException
+     * @throws org.apache.commons.math3.exception.TooManyEvaluationsException
      * if the maximal number of evaluations is exceeded.
-     * @throws org.apache.commons.math.exception.NullArgumentException if
+     * @throws org.apache.commons.math3.exception.NullArgumentException if
      * any argument is {@code null}.
      */
     PointVectorValuePair optimize(int maxEval, FUNC f, double[] target,

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/BaseOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,17 +15,17 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
 /**
  * This interface is mainly intended to enforce the internal coherence of
  * Commons-Math. Users of the API are advised to base their code on
  * the following interfaces:
  * <ul>
- *  <li>{@link org.apache.commons.math.optimization.MultivariateOptimizer}</li>
- *  <li>{@link org.apache.commons.math.optimization.DifferentiableMultivariateOptimizer}</li>
- *  <li>{@link org.apache.commons.math.optimization.DifferentiableMultivariateVectorOptimizer}</li>
- *  <li>{@link org.apache.commons.math.optimization.univariate.UnivariateRealOptimizer}</li>
+ *  <li>{@link org.apache.commons.math3.optimization.MultivariateOptimizer}</li>
+ *  <li>{@link org.apache.commons.math3.optimization.DifferentiableMultivariateOptimizer}</li>
+ *  <li>{@link org.apache.commons.math3.optimization.DifferentiableMultivariateVectorOptimizer}</li>
+ *  <li>{@link org.apache.commons.math3.optimization.univariate.UnivariateRealOptimizer}</li>
  * </ul>
  *
  * @param <PAIR> Type of the point/objective pair.

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/ConvergenceChecker.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/ConvergenceChecker.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/ConvergenceChecker.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/ConvergenceChecker.java Tue Feb 14 16:17:55 2012
@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
 /**
  * This interface specifies how to check if an optimization algorithm has
@@ -36,9 +36,9 @@ package org.apache.commons.math.optimiza
  *
  * @param <PAIR> Type of the (point, objective value) pair.
  *
- * @see org.apache.commons.math.optimization.SimplePointChecker
- * @see org.apache.commons.math.optimization.SimpleValueChecker
- * @see org.apache.commons.math.optimization.SimpleVectorValueChecker
+ * @see org.apache.commons.math3.optimization.SimplePointChecker
+ * @see org.apache.commons.math3.optimization.SimpleValueChecker
+ * @see org.apache.commons.math3.optimization.SimpleVectorValueChecker
  *
  * @version $Id$
  * @since 3.0

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateMultiStartOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateMultiStartOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateMultiStartOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateMultiStartOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,10 +15,10 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.analysis.DifferentiableMultivariateFunction;
-import org.apache.commons.math.random.RandomVectorGenerator;
+import org.apache.commons.math3.analysis.DifferentiableMultivariateFunction;
+import org.apache.commons.math3.random.RandomVectorGenerator;
 
 /**
  * Special implementation of the {@link DifferentiableMultivariateOptimizer}

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,9 +15,9 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.analysis.DifferentiableMultivariateFunction;
+import org.apache.commons.math3.analysis.DifferentiableMultivariateFunction;
 
 /**
  * This interface represents an optimization algorithm for

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateVectorMultiStartOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateVectorMultiStartOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateVectorMultiStartOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateVectorMultiStartOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,10 +15,10 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.analysis.DifferentiableMultivariateVectorFunction;
-import org.apache.commons.math.random.RandomVectorGenerator;
+import org.apache.commons.math3.analysis.DifferentiableMultivariateVectorFunction;
+import org.apache.commons.math3.random.RandomVectorGenerator;
 
 /**
  * Special implementation of the {@link DifferentiableMultivariateVectorOptimizer}

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateVectorOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateVectorOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateVectorOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/DifferentiableMultivariateVectorOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,9 +15,9 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.analysis.DifferentiableMultivariateVectorFunction;
+import org.apache.commons.math3.analysis.DifferentiableMultivariateVectorFunction;
 
 /**
  * This interface represents an optimization algorithm for

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/GoalType.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/GoalType.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/GoalType.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/GoalType.java Tue Feb 14 16:17:55 2012
@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
 import java.io.Serializable;
 

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/LeastSquaresConverter.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/LeastSquaresConverter.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/LeastSquaresConverter.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/LeastSquaresConverter.java Tue Feb 14 16:17:55 2012
@@ -15,12 +15,12 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.analysis.MultivariateVectorFunction;
-import org.apache.commons.math.exception.DimensionMismatchException;
-import org.apache.commons.math.linear.RealMatrix;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.analysis.MultivariateVectorFunction;
+import org.apache.commons.math3.exception.DimensionMismatchException;
+import org.apache.commons.math3.linear.RealMatrix;
 
 /** This class converts {@link MultivariateVectorFunction vectorial
  * objective functions} to {@link MultivariateFunction scalar objective functions}

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/MultivariateMultiStartOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/MultivariateMultiStartOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/MultivariateMultiStartOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/MultivariateMultiStartOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,10 +15,10 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.random.RandomVectorGenerator;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.random.RandomVectorGenerator;
 
 /**
  * Special implementation of the {@link MultivariateOptimizer} interface adding

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/MultivariateOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/MultivariateOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/MultivariateOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/MultivariateOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,9 +15,9 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
+import org.apache.commons.math3.analysis.MultivariateFunction;
 
 /**
  * This interface represents an optimization algorithm for {@link MultivariateFunction

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/PointValuePair.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/PointValuePair.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/PointValuePair.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/PointValuePair.java Tue Feb 14 16:17:55 2012
@@ -15,16 +15,16 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.util.Pair;
+import org.apache.commons.math3.util.Pair;
 
 /**
  * This class holds a point and the value of an objective function at
  * that point.
  *
  * @see PointVectorValuePair
- * @see org.apache.commons.math.analysis.MultivariateFunction
+ * @see org.apache.commons.math3.analysis.MultivariateFunction
  * @version $Id$
  * @since 3.0
  */

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/PointVectorValuePair.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/PointVectorValuePair.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/PointVectorValuePair.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/PointVectorValuePair.java Tue Feb 14 16:17:55 2012
@@ -15,16 +15,16 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.util.Pair;
+import org.apache.commons.math3.util.Pair;
 
 /**
  * This class holds a point and the vectorial value of an objective function at
  * that point.
  *
  * @see PointValuePair
- * @see org.apache.commons.math.analysis.MultivariateVectorFunction
+ * @see org.apache.commons.math3.analysis.MultivariateVectorFunction
  * @version $Id$
  * @since 3.0
  */

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/SimplePointChecker.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/SimplePointChecker.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/SimplePointChecker.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/SimplePointChecker.java Tue Feb 14 16:17:55 2012
@@ -15,10 +15,10 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.util.FastMath;
-import org.apache.commons.math.util.Pair;
+import org.apache.commons.math3.util.FastMath;
+import org.apache.commons.math3.util.Pair;
 
 /**
  * Simple implementation of the {@link ConvergenceChecker} interface using

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/SimpleValueChecker.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/SimpleValueChecker.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/SimpleValueChecker.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/SimpleValueChecker.java Tue Feb 14 16:17:55 2012
@@ -15,9 +15,9 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.util.FastMath;
+import org.apache.commons.math3.util.FastMath;
 
 /**
  * Simple implementation of the {@link ConvergenceChecker} interface using

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/SimpleVectorValueChecker.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/SimpleVectorValueChecker.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/SimpleVectorValueChecker.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/SimpleVectorValueChecker.java Tue Feb 14 16:17:55 2012
@@ -15,9 +15,9 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization;
+package org.apache.commons.math3.optimization;
 
-import org.apache.commons.math.util.FastMath;
+import org.apache.commons.math3.util.FastMath;
 
 /**
  * Simple implementation of the {@link ConvergenceChecker} interface using

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/AbstractSimplex.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/AbstractSimplex.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/AbstractSimplex.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/AbstractSimplex.java Tue Feb 14 16:17:55 2012
@@ -15,20 +15,20 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;
 
 import java.util.Arrays;
 import java.util.Comparator;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.exception.NotStrictlyPositiveException;
-import org.apache.commons.math.exception.DimensionMismatchException;
-import org.apache.commons.math.exception.ZeroException;
-import org.apache.commons.math.exception.OutOfRangeException;
-import org.apache.commons.math.exception.NullArgumentException;
-import org.apache.commons.math.exception.MathIllegalArgumentException;
-import org.apache.commons.math.exception.util.LocalizedFormats;
-import org.apache.commons.math.optimization.PointValuePair;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.exception.NotStrictlyPositiveException;
+import org.apache.commons.math3.exception.DimensionMismatchException;
+import org.apache.commons.math3.exception.ZeroException;
+import org.apache.commons.math3.exception.OutOfRangeException;
+import org.apache.commons.math3.exception.NullArgumentException;
+import org.apache.commons.math3.exception.MathIllegalArgumentException;
+import org.apache.commons.math3.exception.util.LocalizedFormats;
+import org.apache.commons.math3.optimization.PointValuePair;
 
 /**
  * This class implements the simplex concept.
@@ -199,7 +199,7 @@ public abstract class AbstractSimplex {
      * @param evaluationFunction Evaluation function.
      * @param comparator Comparator to use to sort simplex vertices from best
      * to worst.
-     * @throws org.apache.commons.math.exception.TooManyEvaluationsException
+     * @throws org.apache.commons.math3.exception.TooManyEvaluationsException
      * if the algorithm fails to converge.
      */
     public abstract void iterate(final MultivariateFunction evaluationFunction,
@@ -237,7 +237,7 @@ public abstract class AbstractSimplex {
      *
      * @param evaluationFunction Evaluation function.
      * @param comparator Comparator to use to sort simplex vertices from best to worst.
-     * @throws org.apache.commons.math.exception.TooManyEvaluationsException
+     * @throws org.apache.commons.math3.exception.TooManyEvaluationsException
      * if the maximal number of evaluations is exceeded.
      */
     public void evaluate(final MultivariateFunction evaluationFunction,

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BOBYQAOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BOBYQAOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BOBYQAOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BOBYQAOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,21 +15,21 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;
 
 import java.util.Arrays;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.exception.MathIllegalStateException;
-import org.apache.commons.math.exception.NumberIsTooSmallException;
-import org.apache.commons.math.exception.OutOfRangeException;
-import org.apache.commons.math.exception.util.LocalizedFormats;
-import org.apache.commons.math.linear.Array2DRowRealMatrix;
-import org.apache.commons.math.linear.ArrayRealVector;
-import org.apache.commons.math.linear.RealVector;
-import org.apache.commons.math.optimization.GoalType;
-import org.apache.commons.math.optimization.PointValuePair;
-import org.apache.commons.math.optimization.MultivariateOptimizer;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.exception.MathIllegalStateException;
+import org.apache.commons.math3.exception.NumberIsTooSmallException;
+import org.apache.commons.math3.exception.OutOfRangeException;
+import org.apache.commons.math3.exception.util.LocalizedFormats;
+import org.apache.commons.math3.linear.Array2DRowRealMatrix;
+import org.apache.commons.math3.linear.ArrayRealVector;
+import org.apache.commons.math3.linear.RealVector;
+import org.apache.commons.math3.optimization.GoalType;
+import org.apache.commons.math3.optimization.PointValuePair;
+import org.apache.commons.math3.optimization.MultivariateOptimizer;
 
 /**
  * Powell's BOBYQA algorithm. This implementation is translated and

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,18 +15,18 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;
 
-import org.apache.commons.math.util.Incrementor;
-import org.apache.commons.math.exception.MaxCountExceededException;
-import org.apache.commons.math.exception.TooManyEvaluationsException;
-import org.apache.commons.math.exception.NullArgumentException;
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.optimization.BaseMultivariateOptimizer;
-import org.apache.commons.math.optimization.GoalType;
-import org.apache.commons.math.optimization.ConvergenceChecker;
-import org.apache.commons.math.optimization.PointValuePair;
-import org.apache.commons.math.optimization.SimpleValueChecker;
+import org.apache.commons.math3.util.Incrementor;
+import org.apache.commons.math3.exception.MaxCountExceededException;
+import org.apache.commons.math3.exception.TooManyEvaluationsException;
+import org.apache.commons.math3.exception.NullArgumentException;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.optimization.BaseMultivariateOptimizer;
+import org.apache.commons.math3.optimization.GoalType;
+import org.apache.commons.math3.optimization.ConvergenceChecker;
+import org.apache.commons.math3.optimization.PointValuePair;
+import org.apache.commons.math3.optimization.SimpleValueChecker;
 
 /**
  * Base class for implementing optimizers for multivariate scalar functions.

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateSimpleBoundsOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateSimpleBoundsOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateSimpleBoundsOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateSimpleBoundsOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,17 +15,17 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.optimization.BaseMultivariateOptimizer;
-import org.apache.commons.math.optimization.BaseMultivariateSimpleBoundsOptimizer;
-import org.apache.commons.math.optimization.GoalType;
-import org.apache.commons.math.optimization.PointValuePair;
-import org.apache.commons.math.optimization.ConvergenceChecker;
-import org.apache.commons.math.exception.DimensionMismatchException;
-import org.apache.commons.math.exception.NumberIsTooSmallException;
-import org.apache.commons.math.exception.NumberIsTooLargeException;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.optimization.BaseMultivariateOptimizer;
+import org.apache.commons.math3.optimization.BaseMultivariateSimpleBoundsOptimizer;
+import org.apache.commons.math3.optimization.GoalType;
+import org.apache.commons.math3.optimization.PointValuePair;
+import org.apache.commons.math3.optimization.ConvergenceChecker;
+import org.apache.commons.math3.exception.DimensionMismatchException;
+import org.apache.commons.math3.exception.NumberIsTooSmallException;
+import org.apache.commons.math3.exception.NumberIsTooLargeException;
 
 /**
  * Base class for implementing optimizers for multivariate scalar functions,
@@ -51,7 +51,7 @@ public abstract class BaseAbstractMultiv
     /**
      * Simple constructor with default settings.
      * The convergence checker is set to a
-     * {@link org.apache.commons.math.optimization.SimpleValueChecker} and
+     * {@link org.apache.commons.math3.optimization.SimpleValueChecker} and
      * the allowed number of evaluations is set to {@link Integer#MAX_VALUE}.
      *
      * @see BaseAbstractMultivariateOptimizer#BaseAbstractMultivariateOptimizer()

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/BaseAbstractMultivariateVectorOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,18 +15,18 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;
 
-import org.apache.commons.math.util.Incrementor;
-import org.apache.commons.math.exception.MaxCountExceededException;
-import org.apache.commons.math.exception.TooManyEvaluationsException;
-import org.apache.commons.math.exception.DimensionMismatchException;
-import org.apache.commons.math.exception.NullArgumentException;
-import org.apache.commons.math.analysis.MultivariateVectorFunction;
-import org.apache.commons.math.optimization.BaseMultivariateVectorOptimizer;
-import org.apache.commons.math.optimization.ConvergenceChecker;
-import org.apache.commons.math.optimization.PointVectorValuePair;
-import org.apache.commons.math.optimization.SimpleVectorValueChecker;
+import org.apache.commons.math3.util.Incrementor;
+import org.apache.commons.math3.exception.MaxCountExceededException;
+import org.apache.commons.math3.exception.TooManyEvaluationsException;
+import org.apache.commons.math3.exception.DimensionMismatchException;
+import org.apache.commons.math3.exception.NullArgumentException;
+import org.apache.commons.math3.analysis.MultivariateVectorFunction;
+import org.apache.commons.math3.optimization.BaseMultivariateVectorOptimizer;
+import org.apache.commons.math3.optimization.ConvergenceChecker;
+import org.apache.commons.math3.optimization.PointVectorValuePair;
+import org.apache.commons.math3.optimization.SimpleVectorValueChecker;
 
 /**
  * Base class for implementing optimizers for multivariate scalar functions.

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,30 +15,30 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;
 
 import java.util.ArrayList;
 import java.util.Arrays;
 import java.util.List;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.exception.MultiDimensionMismatchException;
-import org.apache.commons.math.exception.NoDataException;
-import org.apache.commons.math.exception.NotPositiveException;
-import org.apache.commons.math.exception.OutOfRangeException;
-import org.apache.commons.math.exception.TooManyEvaluationsException;
-import org.apache.commons.math.linear.Array2DRowRealMatrix;
-import org.apache.commons.math.linear.EigenDecomposition;
-import org.apache.commons.math.linear.MatrixUtils;
-import org.apache.commons.math.linear.RealMatrix;
-import org.apache.commons.math.optimization.ConvergenceChecker;
-import org.apache.commons.math.optimization.GoalType;
-import org.apache.commons.math.optimization.MultivariateOptimizer;
-import org.apache.commons.math.optimization.PointValuePair;
-import org.apache.commons.math.optimization.SimpleValueChecker;
-import org.apache.commons.math.random.MersenneTwister;
-import org.apache.commons.math.random.RandomGenerator;
-import org.apache.commons.math.util.MathArrays;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.exception.MultiDimensionMismatchException;
+import org.apache.commons.math3.exception.NoDataException;
+import org.apache.commons.math3.exception.NotPositiveException;
+import org.apache.commons.math3.exception.OutOfRangeException;
+import org.apache.commons.math3.exception.TooManyEvaluationsException;
+import org.apache.commons.math3.linear.Array2DRowRealMatrix;
+import org.apache.commons.math3.linear.EigenDecomposition;
+import org.apache.commons.math3.linear.MatrixUtils;
+import org.apache.commons.math3.linear.RealMatrix;
+import org.apache.commons.math3.optimization.ConvergenceChecker;
+import org.apache.commons.math3.optimization.GoalType;
+import org.apache.commons.math3.optimization.MultivariateOptimizer;
+import org.apache.commons.math3.optimization.PointValuePair;
+import org.apache.commons.math3.optimization.SimpleValueChecker;
+import org.apache.commons.math3.random.MersenneTwister;
+import org.apache.commons.math3.random.RandomGenerator;
+import org.apache.commons.math3.util.MathArrays;
 
 /**
  * <p>An implementation of the active Covariance Matrix Adaptation Evolution Strategy (CMA-ES)

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/MultiDirectionalSimplex.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/MultiDirectionalSimplex.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/MultiDirectionalSimplex.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/MultiDirectionalSimplex.java Tue Feb 14 16:17:55 2012
@@ -15,12 +15,12 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;
 
 import java.util.Comparator;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.optimization.PointValuePair;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.optimization.PointValuePair;
 
 /**
  * This class implements the multi-directional direct search method.
@@ -137,9 +137,9 @@ public class MultiDirectionalSimplex ext
      * {@link AbstractSimplex#AbstractSimplex(double[][])}.
      * @param khi Expansion coefficient.
      * @param gamma Contraction coefficient.
-     * @throws org.apache.commons.math.exception.NotStrictlyPositiveException
+     * @throws org.apache.commons.math3.exception.NotStrictlyPositiveException
      * if the reference simplex does not contain at least one point.
-     * @throws org.apache.commons.math.exception.DimensionMismatchException
+     * @throws org.apache.commons.math3.exception.DimensionMismatchException
      * if there is a dimension mismatch in the reference simplex.
      */
     public MultiDirectionalSimplex(final double[][] referenceSimplex,
@@ -188,7 +188,7 @@ public class MultiDirectionalSimplex ext
      * @param comparator Comparator to use to sort simplex vertices from best
      * to poorest.
      * @return the best point in the transformed simplex.
-     * @throws org.apache.commons.math.exception.TooManyEvaluationsException
+     * @throws org.apache.commons.math3.exception.TooManyEvaluationsException
      * if the maximal number of evaluations is exceeded.
      */
     private PointValuePair evaluateNewSimplex(final MultivariateFunction evaluationFunction,

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/MultivariateFunctionMappingAdapter.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/MultivariateFunctionMappingAdapter.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/MultivariateFunctionMappingAdapter.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/MultivariateFunctionMappingAdapter.java Tue Feb 14 16:17:55 2012
@@ -15,16 +15,16 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.analysis.UnivariateFunction;
-import org.apache.commons.math.analysis.function.Logit;
-import org.apache.commons.math.analysis.function.Sigmoid;
-import org.apache.commons.math.exception.DimensionMismatchException;
-import org.apache.commons.math.exception.NumberIsTooSmallException;
-import org.apache.commons.math.util.FastMath;
-import org.apache.commons.math.util.MathUtils;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.analysis.UnivariateFunction;
+import org.apache.commons.math3.analysis.function.Logit;
+import org.apache.commons.math3.analysis.function.Sigmoid;
+import org.apache.commons.math3.exception.DimensionMismatchException;
+import org.apache.commons.math3.exception.NumberIsTooSmallException;
+import org.apache.commons.math3.util.FastMath;
+import org.apache.commons.math3.util.MathUtils;
 
 /**
  * <p>Adapter for mapping bounded {@link MultivariateFunction} to unbounded ones.</p>
@@ -53,8 +53,8 @@ import org.apache.commons.math.util.Math
  * user is responsible for converting his bounded point to unbounded by calling
  * {@link #boundedToUnbounded(double[])} before providing them to the optimizer.
  * For the same reason, the point returned by the {@link
- * org.apache.commons.math.optimization.BaseMultivariateOptimizer#optimize(int,
- * MultivariateFunction, org.apache.commons.math.optimization.GoalType, double[])}
+ * org.apache.commons.math3.optimization.BaseMultivariateOptimizer#optimize(int,
+ * MultivariateFunction, org.apache.commons.math3.optimization.GoalType, double[])}
  * method is unbounded. So to convert this point to bounded, users must call
  * {@link #unboundedToBounded(double[])} by themselves!</p>
  * <p>

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/MultivariateFunctionPenaltyAdapter.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/MultivariateFunctionPenaltyAdapter.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/MultivariateFunctionPenaltyAdapter.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/MultivariateFunctionPenaltyAdapter.java Tue Feb 14 16:17:55 2012
@@ -15,13 +15,13 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.exception.DimensionMismatchException;
-import org.apache.commons.math.exception.NumberIsTooSmallException;
-import org.apache.commons.math.util.FastMath;
-import org.apache.commons.math.util.MathUtils;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.exception.DimensionMismatchException;
+import org.apache.commons.math3.exception.NumberIsTooSmallException;
+import org.apache.commons.math3.util.FastMath;
+import org.apache.commons.math3.util.MathUtils;
 
 /**
  * <p>Adapter extending bounded {@link MultivariateFunction} to an unbouded

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/NelderMeadSimplex.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/NelderMeadSimplex.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/NelderMeadSimplex.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/NelderMeadSimplex.java Tue Feb 14 16:17:55 2012
@@ -15,12 +15,12 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;
 
 import java.util.Comparator;
 
-import org.apache.commons.math.optimization.PointValuePair;
-import org.apache.commons.math.analysis.MultivariateFunction;
+import org.apache.commons.math3.optimization.PointValuePair;
+import org.apache.commons.math3.analysis.MultivariateFunction;
 
 /**
  * This class implements the Nelder-Mead simplex algorithm.
@@ -166,9 +166,9 @@ public class NelderMeadSimplex extends A
      * @param khi Expansion coefficient.
      * @param gamma Contraction coefficient.
      * @param sigma Shrinkage coefficient.
-     * @throws org.apache.commons.math.exception.NotStrictlyPositiveException
+     * @throws org.apache.commons.math3.exception.NotStrictlyPositiveException
      * if the reference simplex does not contain at least one point.
-     * @throws org.apache.commons.math.exception.DimensionMismatchException
+     * @throws org.apache.commons.math3.exception.DimensionMismatchException
      * if there is a dimension mismatch in the reference simplex.
      */
     public NelderMeadSimplex(final double[][] referenceSimplex,

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/PowellOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/PowellOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/PowellOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/PowellOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,21 +15,21 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;
 
-import org.apache.commons.math.util.FastMath;
-import org.apache.commons.math.util.MathArrays;
-import org.apache.commons.math.analysis.UnivariateFunction;
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.exception.NumberIsTooSmallException;
-import org.apache.commons.math.exception.NotStrictlyPositiveException;
-import org.apache.commons.math.optimization.GoalType;
-import org.apache.commons.math.optimization.PointValuePair;
-import org.apache.commons.math.optimization.ConvergenceChecker;
-import org.apache.commons.math.optimization.MultivariateOptimizer;
-import org.apache.commons.math.optimization.univariate.BracketFinder;
-import org.apache.commons.math.optimization.univariate.BrentOptimizer;
-import org.apache.commons.math.optimization.univariate.UnivariatePointValuePair;
+import org.apache.commons.math3.util.FastMath;
+import org.apache.commons.math3.util.MathArrays;
+import org.apache.commons.math3.analysis.UnivariateFunction;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.exception.NumberIsTooSmallException;
+import org.apache.commons.math3.exception.NotStrictlyPositiveException;
+import org.apache.commons.math3.optimization.GoalType;
+import org.apache.commons.math3.optimization.PointValuePair;
+import org.apache.commons.math3.optimization.ConvergenceChecker;
+import org.apache.commons.math3.optimization.MultivariateOptimizer;
+import org.apache.commons.math3.optimization.univariate.BracketFinder;
+import org.apache.commons.math3.optimization.univariate.BrentOptimizer;
+import org.apache.commons.math3.optimization.univariate.UnivariatePointValuePair;
 
 /**
  * Powell algorithm.
@@ -259,7 +259,7 @@ public class PowellOptimizer
          * @param p Starting point.
          * @param d Search direction.
          * @return the optimum.
-         * @throws org.apache.commons.math.exception.TooManyEvaluationsException
+         * @throws org.apache.commons.math3.exception.TooManyEvaluationsException
          * if the number of evaluations is exceeded.
          */
         public UnivariatePointValuePair search(final double[] p, final double[] d) {

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/SimplexOptimizer.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/SimplexOptimizer.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/SimplexOptimizer.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/SimplexOptimizer.java Tue Feb 14 16:17:55 2012
@@ -15,17 +15,17 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;
 
 import java.util.Comparator;
 
-import org.apache.commons.math.analysis.MultivariateFunction;
-import org.apache.commons.math.exception.NullArgumentException;
-import org.apache.commons.math.optimization.GoalType;
-import org.apache.commons.math.optimization.ConvergenceChecker;
-import org.apache.commons.math.optimization.PointValuePair;
-import org.apache.commons.math.optimization.SimpleValueChecker;
-import org.apache.commons.math.optimization.MultivariateOptimizer;
+import org.apache.commons.math3.analysis.MultivariateFunction;
+import org.apache.commons.math3.exception.NullArgumentException;
+import org.apache.commons.math3.optimization.GoalType;
+import org.apache.commons.math3.optimization.ConvergenceChecker;
+import org.apache.commons.math3.optimization.PointValuePair;
+import org.apache.commons.math3.optimization.SimpleValueChecker;
+import org.apache.commons.math3.optimization.MultivariateOptimizer;
 
 /**
  * This class implements simplex-based direct search optimization.

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/package-info.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/package-info.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/package-info.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/direct/package-info.java Tue Feb 14 16:17:55 2012
@@ -21,4 +21,4 @@
  * </p>
  *
  */
-package org.apache.commons.math.optimization.direct;
+package org.apache.commons.math3.optimization.direct;

Modified: commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/fitting/CurveFitter.java
URL: http://svn.apache.org/viewvc/commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/fitting/CurveFitter.java?rev=1244107&r1=1243975&r2=1244107&view=diff
==============================================================================
--- commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/fitting/CurveFitter.java (original)
+++ commons/proper/math/trunk/src/main/java/org/apache/commons/math3/optimization/fitting/CurveFitter.java Tue Feb 14 16:17:55 2012
@@ -15,16 +15,16 @@
  * limitations under the License.
  */
 
-package org.apache.commons.math.optimization.fitting;
+package org.apache.commons.math3.optimization.fitting;
 
 import java.util.ArrayList;
 import java.util.List;
 
-import org.apache.commons.math.analysis.DifferentiableMultivariateVectorFunction;
-import org.apache.commons.math.analysis.ParametricUnivariateFunction;
-import org.apache.commons.math.analysis.MultivariateMatrixFunction;
-import org.apache.commons.math.optimization.DifferentiableMultivariateVectorOptimizer;
-import org.apache.commons.math.optimization.PointVectorValuePair;
+import org.apache.commons.math3.analysis.DifferentiableMultivariateVectorFunction;
+import org.apache.commons.math3.analysis.ParametricUnivariateFunction;
+import org.apache.commons.math3.analysis.MultivariateMatrixFunction;
+import org.apache.commons.math3.optimization.DifferentiableMultivariateVectorOptimizer;
+import org.apache.commons.math3.optimization.PointVectorValuePair;
 
 /** Fitter for parametric univariate real functions y = f(x).
  * <p>When a univariate real function y = f(x) does depend on some
@@ -117,7 +117,7 @@ public class CurveFitter {
      * @param f parametric function to fit.
      * @param initialGuess first guess of the function parameters.
      * @return the fitted parameters.
-     * @throws org.apache.commons.math.exception.DimensionMismatchException
+     * @throws org.apache.commons.math3.exception.DimensionMismatchException
      * if the start point dimension is wrong.
      */
     public double[] fit(final ParametricUnivariateFunction f, final double[] initialGuess) {
@@ -135,9 +135,9 @@ public class CurveFitter {
      * @param initialGuess first guess of the function parameters.
      * @param maxEval Maximum number of function evaluations.
      * @return the fitted parameters.
-     * @throws org.apache.commons.math.exception.TooManyEvaluationsException
+     * @throws org.apache.commons.math3.exception.TooManyEvaluationsException
      * if the number of allowed evaluations is exceeded.
-     * @throws org.apache.commons.math.exception.DimensionMismatchException
+     * @throws org.apache.commons.math3.exception.DimensionMismatchException
      * if the start point dimension is wrong.
      * @since 3.0
      */



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